BAC Information

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BAC

Clone NameB6Ng01-223M11
Chromosome1 (Build37)15 (Build37)
Map Location 105,912,811 - 105,913,25111,064,449 - 11,065,549
singlet/doubletsingletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC383546, LOC100041134, Cdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223M11.bB6Ng01-223M11.g
ACCGA038425GA038426
length1,0391,100
definitionB6Ng01-223M11.b B6Ng01-223M11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(105,912,811 - 105,913,251)(11,064,449 - 11,065,549)
sequence
gaattctcaattaataaaaataccaattaaaaagaaatttagagtaaaaa
attcacaactagttattattcataaataatgaatagcacagaaacagctg
aataggtacaagcacacccccaaaagaaacagaaataacaaaacaaaaca
aaataaagaaaaaacccaagggtaaaattccttttctctttctttttttt
ttttttccattttttattaggtatttcgctcatttacatttgcaatgcta
taccaaaagtcccccatagccacccaccccctctcccctacccacccact
ccccttttatggccctggcgttcccctgtactggggcatataaagtttgc
gtgtccaatgggcctctcttaccagtgatggccgactaggccatcttttg
atgcatatgcagctagagtcaagagctccggggtactggttagttcataa
tgttgttccacctatagggttgcagatccctttagcttctttggtacttt
ctctagctccttcattgggggccatgtgatccatccaatagccgactgtg
agcatccacttctatgtttgctaggcccaggcatactctgacaagagaca
gctatatcagggtcctttcagcataatcttgctagtgtatgcaatggtgt
cagcatttggaagctgattatgggatggatccccggatatgctagtgtct
acatggtccatccttttatctcagctccaaactttgtctctgtaactcct
tccaagggtgttttgttcccacttctaaggaggggcatagtgttcacact
tcagtcttcatttttcttgagtttcatgtgtttaggaaattgtatcttat
atcttgggtatcttaggttttgggctaatatccacttatcagtgagtaca
tattgtgtgagttcctttgtgatgtgttacctcactcaggatgatgccct
ccaggtccatccatttggctaggaatttcataaattcattctttttaata
gctgagtagtactccattgtgtagatgtaccacattttc
gaattctgtcctggctagttttatgtcaactggccatctcggaagaggaa
atcttaattgagaaagcccttaccaactttgtcctgtgggaaggctgggt
ataatttcttgattgatgattgatctggaagagtctggctcactgtgcac
agtgctacttctgagatcgtgtccctaagtgctataagtaagcagaatga
gcaactgatgaaggaaaagccaacaagcacaactcttcatgtcctctgcc
ccagtttttgcctccagagtcccaccctgattttcctggataatgaacta
gactctgtaagatgaaataaaccctttcctccccaagttgctttcagtta
cgattttatcccagcaatataaaccctaattaagacaaactcaaaacatc
attatttgtgattgttaaggttgaatggaaaggctttctctcagttcttt
caaacacttgacctatttcaagcagatacaatttctagggtcaaagttgg
tctcttcctttagtctcaaggatagatactggatactggacagtagtttt
atctaggtttaggtgatctaagaactgttttcaatcaatagttttatgct
tttatatagtgacttttagtctttcctatgcccatccccctcttacccct
acctctcagtgtgctccatctattttctcatcttatttgtgtatgtgagt
cactggagttagttagcatttcttgccagagcatgagtgggaggttgttt
actggaatgagggcaacatatcagtggctacaacactggagaaagtgaca
gccttcttccaactatactaactctcacaggtccctcaggagggttggtt
tctaatgggtcccttctctacccatgatgcactgttgatggaaccaatct
ctcaaagatcttgcagaaaaccacaattggtggtacctaattctgggtga
ccttgtccctccttttgaaccagtgtatctgatccatattccattagtcc
ctatcacccatttaactagctgccacacaccgctgcaactccttcaaaca
accaatggtaatctcctagttctgcaagtcagtaattggaatgggtctca

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_105912811_105913251
seq2: B6Ng01-223M11.b_260_703

seq1  TTTATTAGGTATTTTCCTCATTTACATTTCCAATGCTATCCCAAAAGTCC  50
      ||||||||||||||  ||||||||||||| ||||||||| ||||||||||
seq2  TTTATTAGGTATTTCGCTCATTTACATTTGCAATGCTATACCAAAAGTCC  50

seq1  CCCATACCCTC---CCCCCACTACCCTATCAACCCACTCCCACTTTTTGG  97
      |||||| || |   ||||| || ||||| | ||||||||||  ||| |||
seq2  CCCATAGCCACCCACCCCCTCTCCCCTACCCACCCACTCCCCTTTTATGG  100

seq1  CCCTGGCATTCCCCTATATTGGGGCATATAAAGTTTGCAAGTCCAATGGG  147
      ||||||| ||||||| || |||||||||||||||||||  ||||||||||
seq2  CCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCGTGTCCAATGGG  150

seq1  CCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAG  197
      |||||||| ||||||||||||||||||||||||||||||| |||||||||
seq2  CCTCTCTTACCAGTGATGGCCGACTAGGCCATCTTTTGATGCATATGCAG  200

seq1  CTAGAGTCAAGAGCTCTGGGGTACTGGTTAGTTCATAATGTTGTTCCACC  247
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACC  250

seq1  TATAGGGTTGCAGATCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTC  297
      ||||||||||||||||||||||||| ||| | ||||||||||||||||| 
seq2  TATAGGGTTGCAGATCCCTTTAGCTTCTTTGGTACTTTCTCTAGCTCCTT  300

seq1  CATTGGGAGCCCTGTGATCCATCCATTAGCTGACTGTGAGTATCCACTTC  347
      ||||||| ||| ||||||||||||| |||| ||||||||| |||||||||
seq2  CATTGGGGGCCATGTGATCCATCCAATAGCCGACTGTGAGCATCCACTTC  350

seq1  TGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCTACATCTGGG  397
      | |||||||||||||| |||||| ||| |||||||||||||| ||| |||
seq2  TATGTTTGCTAGGCCCAGGCATACTCTGACAAGAGACAGCTATATCAGGG  400

seq1  TCCTTTCGATAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGT  441
      |||||||   | |||||||||||||||||||||||||||||| |
seq2  TCCTTTCAGCATAATCTTGCTAGTGTATGCAATGGTGTCAGCAT  444

seq1: chr15_11064449_11065549
seq2: B6Ng01-223M11.g_69_1168

seq1  GAATTCTGTCCTGGCTAGTTTTATGTCAACTGGCCATCTCGGAAGAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCCTGGCTAGTTTTATGTCAACTGGCCATCTCGGAAGAGGAA  50

seq1  ATCTTAATTGAGAAAGCCCTTACCAACTTTGTCCTGTGGGAAGGCTGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAATTGAGAAAGCCCTTACCAACTTTGTCCTGTGGGAAGGCTGGGT  100

seq1  ATAATTTCTTGATTGATGATTGATCTGGAAGAGTCTGGCTCACTGTGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTCTTGATTGATGATTGATCTGGAAGAGTCTGGCTCACTGTGCAC  150

seq1  AGTGCTACTTCTGAGATCGTGTCCCTAAGTGCTATAAGTAAGCAGAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTACTTCTGAGATCGTGTCCCTAAGTGCTATAAGTAAGCAGAATGA  200

seq1  GCAACTGATGAAGGAAAAGCCAACAAGCACAACTCTTCATGTCCTCTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTGATGAAGGAAAAGCCAACAAGCACAACTCTTCATGTCCTCTGCC  250

seq1  CCAGTTTTTGCCTCCAGAGTCCCACCCTGATTTTCCTGGATAATGAACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTTTGCCTCCAGAGTCCCACCCTGATTTTCCTGGATAATGAACTA  300

seq1  GACTCTGTAAGATGAAATAAACCCTTTCCTCCCCAAGTTGCTTTCAGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGTAAGATGAAATAAACCCTTTCCTCCCCAAGTTGCTTTCAGTTA  350

seq1  CGATTTTATCCCAGCAATATAAACCCTAATTAAGACAAACTCAAAACATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTTTATCCCAGCAATATAAACCCTAATTAAGACAAACTCAAAACATC  400

seq1  ATTATTTGTGATTGTTAAGGTTGAATGGAAAGGCTTTCTCTCAGTTCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTGTGATTGTTAAGGTTGAATGGAAAGGCTTTCTCTCAGTTCTTT  450

seq1  CAAACACTTGACCTATTTCAAGCAGATACAATTTCTAGGGTCAAAGTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACTTGACCTATTTCAAGCAGATACAATTTCTAGGGTCAAAGTTGG  500

seq1  TCTCTTCCTTTAGTCTCAAGGATAGATACTGGATACTGGACAGTAGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCCTTTAGTCTCAAGGATAGATACTGGATACTGGACAGTAGTTTT  550

seq1  ATCTAGGTTTAGGTGATCTAAGAACTGTTTTCAATCAATAGTTTTATGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGGTTTAGGTGATCTAAGAACTGTTTTCAATCAATAGTTTTATGCT  600

seq1  TTTATATAGTGACTTTTAGTCTTTCCTATGCCCATCCCCCTCTTACCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATAGTGACTTTTAGTCTTTCCTATGCCCATCCCCCTCTTACCCCT  650

seq1  ACCTCTCAGTGTGCTCCATCTATTTTCTCATCTTATTTGTGTATGTGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCAGTGTGCTCCATCTATTTTCTCATCTTATTTGTGTATGTGAGT  700

seq1  CACTGGAGTTAGTTAGCATTTCTTGCCAGAGCATGAGTGGGAGGTTGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGAGTTAGTTAGCATTTCTTGCCAGAGCATGAGTGGGAGGTTGTTT  750

seq1  ACTGGAATGAGGGCAACATATCAGTGGCTACAACACTGGAGAAAGTGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAATGAGGGCAACATATCAGTGGCTACAACACTGGAGAAAGTGACA  800

seq1  GCCTTCTTCCAACTATACTAACTCTCACAGGTCCCTCAGGGAGGGTTGGT  850
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCCTTCTTCCAACTATACTAACTCTCACAGGTCCCTCA-GGAGGGTTGGT  849

seq1  TTCTAATGGGTCCCTTCTCTACCCATGATGCACTGTTGATGGAACCAATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATGGGTCCCTTCTCTACCCATGATGCACTGTTGATGGAACCAATC  899

seq1  TCTCAAAGATCTTGCAGAAAACCACAATTGGTGGTACCTAATTCTGGGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAGATCTTGCAGAAAACCACAATTGGTGGTACCTAATTCTGGGTG  949

seq1  ACCTTGTCCCTCCTTTTGGAACCAGTGTATCTGATCCATATTCCATTAGT  1000
      ||||||||||||||||| ||||||||||||||||||||||||||||||| 
seq2  ACCTTGTCCCTCCTTTT-GAACCAGTGTATCTGATCCATATTCCATTAG-  997

seq1  TCCCTATCACCCATTTAACTAGCTG---CACA-CGCTGCATCTC--TCAA  1044
      |||||||||||||||||||||||||   |||| ||||||| |||  ||||
seq2  TCCCTATCACCCATTTAACTAGCTGCCACACACCGCTGCAACTCCTTCAA  1047

seq1  ACAACCCAGGGTTGGTATTCT-CTAGTTCTGCAAGTCAGTAATTTGAAAT  1093
      |||||| |    ||||| ||| |||||||||||||||||||| ||| |||
seq2  ACAACCAA----TGGTAATCTCCTAGTTCTGCAAGTCAGTAA-TTGGAAT  1092

seq1  GGGTCTCA  1101
      ||||||||
seq2  GGGTCTCA  1100