BAC Information

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BAC

Clone NameB6Ng01-225M07
Chromosome1 (Build37)
Map Location 66,347,556 - 66,497,078
singlet/doubletdoublet
Overlap geneMtap2
Upstream genePthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775, Crygf, LOC667781, EG667786
Downstream geneC030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225M07.bB6Ng01-225M07.g
ACCGA039879GA039880
length1,0951,148
definitionB6Ng01-225M07.b B6Ng01-225M07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,495,968 - 66,497,078)(66,347,556 - 66,348,698)
sequence
gaattctagtctgatttaaccaggttttctatagaattataggcctcgtt
cttttgaactccagttccaaatttatagggaaagataaggaacctaggtc
agggttacaagctagatacctgcagcataatacctataacagtgaaagct
aaaaagtcagccagtagcttacaggcgattgtgctaggctcatgccaggg
accttgaagtggtttaggtcctcacctgccactgccaggtgtggcttagc
cgcttaaggagtgcttattatccagttctctctctcattctctctctccc
tctccccctccttccttccctccctccctctctctccctctctcccttct
catgcatttccattggcctctctctccctttctgttcttctcagtcccca
cttctcttctctcatggctctgctcccttctgtctgtccgcctttattcc
ttctccaggtcctcaaacccctcactccccccaaataaaccgattttata
ctaggtctattggatggtgtgatttctcagcaggacaccttggcatttcc
ccacccccaccccgcaatgcattatatttcataacatttggtgctgtatc
tcagatggaagttttgggagcttgtgttcccttacaagccaagaccctat
ccctggtctgctagtaagtaggctcagtttcctgcaacctgacttctgac
ttctgcatccaacactaaccaattggtgagttctccacctgtggccactg
ttttttttcccttgtgagaagcttaactcttctactggcatggctccttt
tctcataaaccctagttctaggtgaactgtgctctctcagcatcttgccc
tggctcctgcccagccttgtgacaacctggctggccagcttgtgctggtg
cattctagtcctacccgtgtctttgggatgccttggactcctctccttgc
ccacgggaactgcatacattatgccagagatctagtaaactgagatccca
ctagctctttctcatttcaccaagcctgtttctctgtctgactccctccc
catatctagttataagtcacagatcagccgagtagacacaccagc
gaattcttcatagatctttgtggttgggctagagctaaggttaattaatg
ctaagagcatataggcccacaaagaaaatattaagtaatgaagaagcctt
tttgcatttttaataagacggtatcaaaattaacaacctcatttcttaat
atgcttatttaaaaaaaatttatccacagttacttattgagcttagaaag
aattcaagacctagtgcttaaaacaataaagccatctgacaactagtttg
tggtatgatttgaacacaatgtgagaaagtaggcccctgtgggctagcca
ggaaacacaagtaatgctaatgctctccttctcaagttgggaaatgccag
tcttccactcccatctttcacacaggattaattatgaaacatggccttgc
tctctatttctgtagtgtgtagctggcatggtacttgtcattgtgctaat
gacgtattccagttgttttattcagggctagctctgggcaagggaagctt
tctgcttgagtatattggaaaaaaacaccttcagcatttctttgaagatt
tgtgattctcctatttattagtcttcttgtgttaggcaaatttatttttc
tgagttttaacttcatcatttgtgatgaataacaatttcttaattataag
gcaagcctcataaagttctcctactctcccctctactgcttggaaagaca
gaaatccaagttggtaccaaattccatctgatgcagctccattcatcttt
gtgaacatatgcatggacacttgcatttatacacaagcttcatggcctgg
tttatttgtaagtgtttcagcatcagaattatacaacatttggatcagca
aaggagtggtcagaaacttttattgaggtcccacaggtaaggaaatagat
atctttaaactcttctagtttaatatactgttcttttgaactactaaaaa
taatttaacactattaagaagtacacaaaatcatcattgggaaatcttag
gtcccccaattacttgtagttaaaaagatattttttttgcagatccattt
agattcatgtgaattttttgaattctatgcttctgaattcttattgtgtg
agctcagaacaatagaccttgtgatacaatcgggaatggctcataatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_66495968_66497078
seq2: B6Ng01-225M07.b_50_1144 (reverse)

seq1  GCTGGTGTGTCCTACTCTGCCCTGATCTGTTGGAACTTATAAACTAGATA  50
      |||||||||| |||||| |  |||||||||    |||||| |||||||||
seq2  GCTGGTGTGT-CTACTCGG--CTGATCTGT---GACTTAT-AACTAGATA  43

seq1  TGGGGAGGGAGGCCAGACAAGAAGAAACAAGGCTTGGTGAAATGAGAAAG  100
      |||||||||| | ||||||   |||||| |||||||||||||||||||||
seq2  TGGGGAGGGA-GTCAGACA--GAGAAAC-AGGCTTGGTGAAATGAGAAAG  89

seq1  AGCTAGTGGGGAATCTCAGTTTACTAGATCTCTGGCAATAATTGTATGCA  150
      ||||||||||  |||||||||||||||||||||||| |||| ||||||||
seq2  AGCTAGTGGG--ATCTCAGTTTACTAGATCTCTGGC-ATAA-TGTATGCA  135

seq1  GTTCCCGTGGGCAAGGAGAGGAGTCCAAGGCATCCCAAAGACACGGGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCGTGGGCAAGGAGAGGAGTCCAAGGCATCCCAAAGACACGGGTAG  185

seq1  GACTAGAATGCACCAGCACAAGCTGGCCAGCCAGGTTGTCACAAGGCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGAATGCACCAGCACAAGCTGGCCAGCCAGGTTGTCACAAGGCTGG  235

seq1  GCAGGAGCCAGGGCAAGATGCCTGAGAGAGCACAGTTCACCTAGAACTAG  300
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GCAGGAGCCAGGGCAAGATG-CTGAGAGAGCACAGTTCACCTAGAACTAG  284

seq1  GGTTTATGAGAAAAGGAGCCATGCCAGTAGAAGAGTTAAGCTTCTCACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTATGAGAAAAGGAGCCATGCCAGTAGAAGAGTTAAGCTTCTCACAA  334

seq1  GGGAAAAAAAACAGTGGCCACAGGTGGAGAACTCACCAATTGGTTAGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAAAAACAGTGGCCACAGGTGGAGAACTCACCAATTGGTTAGTGT  384

seq1  TGGATGCAGAAGTCAGAAGTCAGGTTGCAGGAAACTGAGCCTACTTACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCAGAAGTCAGAAGTCAGGTTGCAGGAAACTGAGCCTACTTACTA  434

seq1  GCAGACCAGGGATAGGGTCTTGGCTTGTAAGGGAACACAAGCTCCCAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACCAGGGATAGGGTCTTGGCTTGTAAGGGAACACAAGCTCCCAAAA  484

seq1  CTTCCATCTGAGATACAGCACCAAATGTTATGAAATATAATGCATTGCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATCTGAGATACAGCACCAAATGTTATGAAATATAATGCATTGCGG  534

seq1  GGTGGGGGTGGGGAAATGCCAAGGTGTCCTGCTGAGAAATCACACCATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGGTGGGGAAATGCCAAGGTGTCCTGCTGAGAAATCACACCATCC  584

seq1  AATAGACCTAGTATAAAATCGGTTTATTTGGGGGGAGTGAGGGGTTTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGACCTAGTATAAAATCGGTTTATTTGGGGGGAGTGAGGGGTTTGAG  634

seq1  GACCTGGAGAAGGAATAAAGGCGGACAGACAGAAGGGAGCAGAGCCATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGAGAAGGAATAAAGGCGGACAGACAGAAGGGAGCAGAGCCATGA  684

seq1  GAGAAGAGAAGTGGGGACTGAGAAGAACAGAAAGGGAGAGAGAGGCCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAGAAGTGGGGACTGAGAAGAACAGAAAGGGAGAGAGAGGCCAAT  734

seq1  GGAAATGCATGAGAAGGGAGAGAGGGAGAGAGAGGGAGGGAGGGAAGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGCATGAGAAGGGAGAGAGGGAGAGAGAGGGAGGGAGGGAAGGAA  784

seq1  GGAGGGGGAGAGGGAGAGAGAGAATGAGAGAGAGAACTGGATAATAAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGGAGAGGGAGAGAGAGAATGAGAGAGAGAACTGGATAATAAGCA  834

seq1  CTCCTTAAGCGGCTAAGCCACACCTGGCAGTGGCAGGTGAGGACCTAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTAAGCGGCTAAGCCACACCTGGCAGTGGCAGGTGAGGACCTAAAC  884

seq1  CACTTCAAGGTCCCTGGCATGAGCCTAGCACAATCGCCTGTAAGCTACTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCAAGGTCCCTGGCATGAGCCTAGCACAATCGCCTGTAAGCTACTG  934

seq1  GCTGACTTTTTAGCTTTCACTGTTATAGGTATTATGCTGCAGGTATCTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTTTTTAGCTTTCACTGTTATAGGTATTATGCTGCAGGTATCTAG  984

seq1  CTTGTAACCCTGACCTAGGTTCCTTATCTTTCCCTATAAATTTGGAACTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAACCCTGACCTAGGTTCCTTATCTTTCCCTATAAATTTGGAACTG  1034

seq1  GAGTTCAAAAGAACGAGGCCTATAATTCTATAGAAAACCTGGTTAAATCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCAAAAGAACGAGGCCTATAATTCTATAGAAAACCTGGTTAAATCA  1084

seq1  GACTAGAATTC  1111
      |||||||||||
seq2  GACTAGAATTC  1095

seq1: chr1_66347556_66348698
seq2: B6Ng01-225M07.g_66_1213

seq1  GAATTCTTCATAGATCTTTGTGGTTGGGCTAGAGCTAAGGTTAATTAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATAGATCTTTGTGGTTGGGCTAGAGCTAAGGTTAATTAATG  50

seq1  CTAAGAGCATATAGGCCCACAAAGAAAATATTAAGTAATGAAGAAGCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGCATATAGGCCCACAAAGAAAATATTAAGTAATGAAGAAGCCTT  100

seq1  TTTGCATTTTTAATAAGACGGTATCAAAATTAACAACCTCATTTCTTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATTTTTAATAAGACGGTATCAAAATTAACAACCTCATTTCTTAAT  150

seq1  ATGCTTATTTAAAAAAAATTTATCCACAGTTACTTATTGAGCTTAGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTATTTAAAAAAAATTTATCCACAGTTACTTATTGAGCTTAGAAAG  200

seq1  AATTCAAGACCTAGTGCTTAAAACAATAAAGCCATCTGACAACTAGTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAGACCTAGTGCTTAAAACAATAAAGCCATCTGACAACTAGTTTG  250

seq1  TGGTATGATTTGAACACAATGTGAGAAAGTAGGCCCCTGTGGGCTAGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATGATTTGAACACAATGTGAGAAAGTAGGCCCCTGTGGGCTAGCCA  300

seq1  GGAAACACAAGTAATGCTAATGCTCTCCTTCTCAAGTTGGGAAATGCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACACAAGTAATGCTAATGCTCTCCTTCTCAAGTTGGGAAATGCCAG  350

seq1  TCTTCCACTCCCATCTTTCACACAGGATTAATTATGAAACATGGCCTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCACTCCCATCTTTCACACAGGATTAATTATGAAACATGGCCTTGC  400

seq1  TCTCTATTTCTGTAGTGTGTAGCTGGCATGGTACTTGTCATTGTGCTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATTTCTGTAGTGTGTAGCTGGCATGGTACTTGTCATTGTGCTAAT  450

seq1  GACGTATTCCAGTTGTTTTATTCAGGGCTAGCTCTGGGCAAGGGAAGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTATTCCAGTTGTTTTATTCAGGGCTAGCTCTGGGCAAGGGAAGCTT  500

seq1  TCTGCTTGAGTATATTGGAAAAAAACACCTTCAGCATTTCTTTGAAGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTGAGTATATTGGAAAAAAACACCTTCAGCATTTCTTTGAAGATT  550

seq1  TGTGATTCTCCTATTTATTAGTCTTCTTGTGTTAGGCAAATTTATTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTCTCCTATTTATTAGTCTTCTTGTGTTAGGCAAATTTATTTTTC  600

seq1  TGAGTTTTAACTTCATCATTTGTGATGAATAACAATTTCTTAATTATAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTTAACTTCATCATTTGTGATGAATAACAATTTCTTAATTATAAG  650

seq1  GCAAGCCTCATAAAGTTCTCCTACTCTCCCCTCTACTGCTTGGAAAGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCCTCATAAAGTTCTCCTACTCTCCCCTCTACTGCTTGGAAAGACA  700

seq1  GAAATCCAAGTTGGTACCAAATTCCATCTGATGCAGCTCCATTCATCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCAAGTTGGTACCAAATTCCATCTGATGCAGCTCCATTCATCTTT  750

seq1  GTGAACATATGCATGGACACTTGCATTTATACACAAGCTTCATGGCCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACATATGCATGGACACTTGCATTTATACACAAGCTTCATGGCCTGG  800

seq1  TTTATTTGTAAGTGTTTCAGCATCAGAATTATACAACATTTGGATCAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGTAAGTGTTTCAGCATCAGAATTATACAACATTTGGATCAGCA  850

seq1  AAGGAGTGGTCAGAAACTTTTATTGAGGTCCCACAGGTAAGGAAATAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTGGTCAGAAACTTTTATTGAGGTCCCACAGGTAAGGAAATAGAT  900

seq1  ATCTTTTAACTCTTCTAGTTTAATATACTGTTCTTTTGAACTACTAAAAA  950
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAAACTCTTCTAGTTTAATATACTGTTCTTTTGAACTACTAAAAA  950

seq1  TAATTTAACACTATTAAGAAGTAACACAAAATCATCATTGGGAAATCTTA  1000
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TAATTTAACACTATTAAGAAGT-ACACAAAATCATCATTGGGAAATCTTA  999

seq1  GGTCCCCCAATTACTTGTAGTTAAAAAGATA-TTTTTTTGCAGAATCCAT  1049
      ||||||||||||||||||||||||||||||| ||||||||||| ||||||
seq2  GGTCCCCCAATTACTTGTAGTTAAAAAGATATTTTTTTTGCAG-ATCCAT  1048

seq1  TTAGATTCATGTGAA-TTTTTGAATTCTATGGCTTCTG-ATTC-TATT-T  1095
      ||||||||||||||| |||||||||||||| ||||||| |||| |||| |
seq2  TTAGATTCATGTGAATTTTTTGAATTCTAT-GCTTCTGAATTCTTATTGT  1097

seq1  GTGAGCTCAG-ACAATAGA-CTGTTGGTATCATC-GGAATGGCTCATAAT  1142
      |||||||||| |||||||| ||  || ||  ||| |||||||||||||||
seq2  GTGAGCTCAGAACAATAGACCTTGTGATACAATCGGGAATGGCTCATAAT  1147

seq1  G  1143
      |
seq2  G  1148