BAC Information

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BAC

Clone NameB6Ng01-226P15
Chromosome1 (Build37)
Map Location 32,521,587 - 32,638,686
singlet/doubletdoublet
Overlap geneKhdrbs2, EG408191
Upstream geneLOC624275, LOC666056, LOC100041238
Downstream geneEG633498, LOC213711, LOC100040828, EG666108, Prim2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226P15.bB6Ng01-226P15.g
ACCGA040768GA040769
length1,030558
definitionB6Ng01-226P15.b B6Ng01-226P15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,521,587 - 32,522,476)(32,638,124 - 32,638,686)
sequence
gaattccatctgacacagcatctggcccaagaaagaaatggtaatgtgtc
agaactctcatgcaaagaagtggatattggctatttaagcatgactctgt
gcacaacttgtatatctgacgctgacaaatcacctgtgttgttaacaact
ttagatcaaatcaacacaagattcttaatggcataccactttattatctt
ttactgtggaaaaaatagatttctgtggagtgttgctgatatttctgacc
tctaccagtttgaccaagagaggagaactctgaagaacctctaggactgc
agaagggtccgagtgactagaatttccccacatattctcctactttccaa
aaaactaagctagacttgccttccttgtgacataaacgtttcttgtgggg
cattgggctatacacagacagtctggtttccagtccatctgaggtgttga
accctgagacctgatggtgatatttcacctacatgggatggaaggagcac
cctggctcctgttgatgttaccaccacccccacagcccccacaaggtaag
catagttagtagtcatgtaggcaatgtcccaagcttctgaccttcaggct
aaactcctccccagttacctagcaacagtaagataaagcagcccactcta
agaggggctgtttggcccctcctcactctctcactcctcttgctctcttg
cttctctctcttctttgtcttctcctctcctctctcctctctctccctct
tactctctagcctttcttttctctctctccttttccctcttttctctcct
cttggtcatagctagtctctctctctctctagctaccttttctcttcccc
ccaccccgcctttctacaatgaagttctaaagccatagacagtctctgct
cctcaaggcccactgtgcagactctagcttgtgtgggaatctctctccct
cagctacttctctcataaccctgtggcacagggtgtcataccagggctcc
cggtcgggaactgccccttgtccacccagc

aaaaccaaattagcatctactggagttttgactttaacactttcctgttt
tataaagagagtaatgcaaaggaagctagtttctagaagaaaggtgcaag
ttttccttcctggggttcatggagcatggggtgggagtccagactggaga
gaaagggcacactaaagagccctacatgcttgccagacacttgctgggtt
tcttctcagctcactagcctacttctgttcttgggagagttttttctctc
tatttcaaattttcaaatagttttgaaaattttattttattatttgtgtc
tgtagggtggggtggggtataagcatgcacgtgtgtacacacatagaggg
ggtcaaaacccctggaactagaactacatgtggttgtgagccatctgatt
tgagtgccgggaactaaatttcaaattttgtaagtaacaaatactcttaa
cccatgaaccatttctatagtctttcttttcttttcttttcttttctttt
cttttcttttcttttcttttctcttctcttctcttctctttctcttctct
tatcttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_32521587_32522476
seq2: B6Ng01-226P15.b_44_933

seq1  GAATTCCATCTGACACAGCATCTGGCCCAAGAAAGAAATGGTAATGTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTGACACAGCATCTGGCCCAAGAAAGAAATGGTAATGTGTC  50

seq1  AGAACTCTCATGCAAAGAAGTGGATATTGGCTATTTAAGCATGACTCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCTCATGCAAAGAAGTGGATATTGGCTATTTAAGCATGACTCTGT  100

seq1  GCACAACTTGTATATCTGACGCTGACAAATCACCTGTGTTGTTAACAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAACTTGTATATCTGACGCTGACAAATCACCTGTGTTGTTAACAACT  150

seq1  TTAGATCAAATCAACACAAGATTCTTAATGGCATACCACTTTATTATCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATCAAATCAACACAAGATTCTTAATGGCATACCACTTTATTATCTT  200

seq1  TTACTGTGGAAAAAATAGATTTCTGTGGAGTGTTGCTGATATTTCTGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTGGAAAAAATAGATTTCTGTGGAGTGTTGCTGATATTTCTGACC  250

seq1  TCTACCAGTTTGACCAAGAGAGGAGAACTCTGAAGAACCTCTAGGACTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCAGTTTGACCAAGAGAGGAGAACTCTGAAGAACCTCTAGGACTGC  300

seq1  AGAAGGGTCCGAGTGACTAGAATTTCCCCACATATTCTCCTACTTTCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGTCCGAGTGACTAGAATTTCCCCACATATTCTCCTACTTTCCAA  350

seq1  AAAACTAAGCTAGACTTGCCTTCCTTGTGACATAAACGTTTCTTGTGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAAGCTAGACTTGCCTTCCTTGTGACATAAACGTTTCTTGTGGGG  400

seq1  CATTGGGCTATACACAGACAGTCTGGTTTCCAGTCCATCTGAGGTGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGCTATACACAGACAGTCTGGTTTCCAGTCCATCTGAGGTGTTGA  450

seq1  ACCCTGAGACCTGATGGTGATATTTCACCTACATGGGATGGAAGGAGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGAGACCTGATGGTGATATTTCACCTACATGGGATGGAAGGAGCAC  500

seq1  CCTGGCTCCTGTTGATGTTACCACCACCCCCACAGCCCCCACAAGGTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTCCTGTTGATGTTACCACCACCCCCACAGCCCCCACAAGGTAAG  550

seq1  CATAGTTAGTAGTCATGTAGGCAATGTCCCAAGCTTCTGACCTTCAGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTAGTAGTCATGTAGGCAATGTCCCAAGCTTCTGACCTTCAGGCT  600

seq1  AAACTCCTCCCCAGTTACCTAGCAACAGTAAGATAAAGCAGCCCACTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCTCCCCAGTTACCTAGCAACAGTAAGATAAAGCAGCCCACTCTA  650

seq1  AGAGGGGCTGTTTGGCCCCTCCTCACTCTCTCACTCCTCTTGCTCTCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGCTGTTTGGCCCCTCCTCACTCTCTCACTCCTCTTGCTCTCTTG  700

seq1  CTTCTCTCTCTTCTTTGTCTTCTCCTCTCCTCTCTCCTCTCTCTCCCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTCTCTTCTTTGTCTTCTCCTCTCCTCTCTCCTCTCTCTCCCTCT  750

seq1  TACTCTCTAGCCTTTCTTTTCTCTCTCTCCTTTTCCCTCTTTTCTCTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTCTAGCCTTTCTTTTCTCTCTCTCCTTTTCCCTCTTTTCTCTCCT  800

seq1  CTTGGTCATAGCTAGTCTCTCTCTCTCTCTAGCTACCTTTTCTCTTCCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCATAGCTAGTCTCTCTCTCTCTCTAGCTACCTTTTCTCTTCCCC  850

seq1  CCACCCCGCCTTTCTACAATGAAGTTCTAAAGCCATAGAC  890
      ||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCGCCTTTCTACAATGAAGTTCTAAAGCCATAGAC  890


seq1: chr1_32638124_32638686
seq2: B6Ng01-226P15.g_66_629 (reverse)

seq1  AGAAGAGAAGAGAAGAG-AAGAGAAGAGAAGAGAAGAGAAAAGAAAAGAA  49
      | |||| |||||||||| ||||||||||||||||||||||||||||||||
seq2  ATAAGATAAGAGAAGAGAAAGAGAAGAGAAGAGAAGAGAAAAGAAAAGAA  50

seq1  AAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAGACTATAGAAATGG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAGACTATAGAAATGG  100

seq1  TTCATGGGTTAAGAGTATTTGTTACTTACAAAATTTGAAATTTAGTTCCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGGTTAAGAGTATTTGTTACTTACAAAATTTGAAATTTAGTTCCC  150

seq1  GGCACTCAAATCAGATGGCTCACAACCACATGTAGTTCTAGTTCCAGGGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTCAAATCAGATGGCTCACAACCACATGTAGTTCTAGTTCCAGGGG  200

seq1  TTTTGACCCCCTCTATGTGTGTACACACGTGCATGCTTATACCCCACCCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACCCCCTCTATGTGTGTACACACGTGCATGCTTATACCCCACCCC  250

seq1  ACCCTACAGACACAAATAATAAAATAAAATTTTCAAAACTATTTGAAAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTACAGACACAAATAATAAAATAAAATTTTCAAAACTATTTGAAAAT  300

seq1  TTGAAATAGAGAGAAAAAACTCTCCCAAGAACAGAAGTAGGCTAGTGAGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATAGAGAGAAAAAACTCTCCCAAGAACAGAAGTAGGCTAGTGAGC  350

seq1  TGAGAAGAAACCCAGCAAGTGTCTGGCAAGCATGTAGGGCTCTTTAGTGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGAAACCCAGCAAGTGTCTGGCAAGCATGTAGGGCTCTTTAGTGT  400

seq1  GCCCTTTCTCTCCAGTCTGGACTCCCACCCCATGCTCCATGAACCCCAGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTTCTCTCCAGTCTGGACTCCCACCCCATGCTCCATGAACCCCAGG  450

seq1  AAGGAAAACTTGCACCTTTCTTCTAGAAACTAGCTTCCTTTGCATTACTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAACTTGCACCTTTCTTCTAGAAACTAGCTTCCTTTGCATTACTC  500

seq1  TCTTTATAAAACAGGAAAGTGTTAAAGTCAAAACTCCAGTAGATGCTAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATAAAACAGGAAAGTGTTAAAGTCAAAACTCCAGTAGATGCTAAT  550

seq1  TTGGTTTTGAATTC  563
      ||||||||||||||
seq2  TTGGTTTTGAATTC  564


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