BAC Information

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BAC

Clone NameB6Ng01-228I10
Chromosome1 (Build37)13 (Build37)
Map Location 189,220,305 - 189,220,82966,462,543 - 66,463,051
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTgfb2, Rrp15, LOC666832, LOC100042375, D1Pas1, Spata17, Gpatch2
Downstream geneEsrrg, 9330162B11Rik, Ush2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228I10.bB6Ng01-228I10.g
ACCGA041916GA041917
length9121,137
definitionB6Ng01-228I10.b B6Ng01-228I10.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(189,220,305 - 189,220,829)(66,462,543 - 66,463,051)
sequence
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatatagtggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagtgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctatcttgtgaaaaagtttgtgcagaaatgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgcctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagcctttttgtagaaggatctgatggtgttttggat
tttcttcaggatctgtttgttatgtctcccttttcagttcttgatttttg
ttaattaggattttgtccctgtgccctctagtgagtctagctaagggttt
atctatctttgttgattttctcaaagaaccaactcctcgtttggtaaatt
ctttgaatagttcttcttgtttccacttgggtgatttcacccctgagttt
gattatttcctgccgtctactccttcttgggtgaatttgcttcctttttt
ttctagagcttt
gaattctacgagactttcaaagaagagctaaagccaatactcttcaaact
attccatgaaatagaaacaaaaggagcactgccaaactcatgctatgagg
ccacagccactctgatacctaaaccacagaaagactcaacagaaagaaaa
ctttagattgatttcccttattaacattgattcaaaatactcaataaaac
acctgcaaaccgaatccaggaacacatcaaagatgtcatcgctcaagatc
aattcggcttcctcaaagagatgcttagaaatttaatatattgaaatcca
ccaatgtaatctaccatataaacaaacttaaagaaaaaactcacatgatt
tttctcattagttgctgaaaaggcctgggattaaatccatcgcctcttca
ttttaaaggtactagatagagaattcatggatacagggtacatacataaa
cataatcacagtaacatacagtaagccaatagataaaaatcaaactaaat
ggagaatttcaaacatttcctctccatttaggtataaggaacaagactaa
ccttcccactctatccctatctatcttttgaaaatatcacttaaaattct
agccagaaaaataagacaagtaaagaagatcaaagaaccagctcttggtt
ttgattgattctttgttcagttcttttagtttctacttgattgatttcag
ccctgagtttgattatttcctgctgtctactctttttgagtgaattttgc
ttccttttgttctagagcttttcaggtgtgctgtcaagctgctagtgtat
gctctctcccctttctttttggaggcactcagagctatgagttttccttt
taaggactgcgtttattgtgtcccataaatttgggtgtacccattttcat
taaactctaaaaagtcattaattcatttcttattttcagtcataatggtg
tacaaagttcatgctagcgtttgtaagcagaggcaggctccttaacagga
tgagacttacaagtgttcttcaagaacagccagggctgtttaactagtac
attgtattggaaaaggaattaaaatttaatttaaggaaagaaaattccat
ttatgaactaggtccatgaactgggaataaattcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_189220305_189220829
seq2: B6Ng01-228I10.b_423_955 (reverse)

seq1  AAAGCTCTAG-AAAAAAAGGAAGCAAATTCACCCAAG-AGGAGTAGACGG  48
      |||||||||| |||||||||||||||||||||||||| ||||||||||||
seq2  AAAGCTCTAGAAAAAAAAGGAAGCAAATTCACCCAAGAAGGAGTAGACGG  50

seq1  CAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAG  98
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAGGAAATAATCAAACTCAGGGGTGAAATCACCCAAGTGGAAACAAGAAG  100

seq1  AACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCA  148
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AACTATTCAAAGAATTTACCAAACGAGGAGTTGGTTCTTTGAGAAAATCA  150

seq1  AC-AAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAA  197
      || ||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACAAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAA  200

seq1  AATCCTAATTAAC-AAAATC-AGAACTGAAAAGGGAGACATAAC-AACAG  244
      ||||||||||||| |||||| ||||||||||||||||||||||| |||||
seq2  AATCCTAATTAACAAAAATCAAGAACTGAAAAGGGAGACATAACAAACAG  250

seq1  ATCCTGAAG-AAATCCAAAACACCATCAGATCCTTCTAC-AAAAGGCTAT  292
      ||||||||| ||||||||||||||||||||||||||||| ||||||||||
seq2  ATCCTGAAGAAAATCCAAAACACCATCAGATCCTTCTACAAAAAGGCTAT  300

seq1  ACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGA  350

seq1  TACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCC  392
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCC  400

seq1  CATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAA  450

seq1  AAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAA  492
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAAGCCCAGGACCAGGCGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAA  500

seq1  GAAGATCTAACTCCAGTTCTGCACAAACTTTTT  525
      |||||||||| |||| |||||||||||||||||
seq2  GAAGATCTAATTCCATTTCTGCACAAACTTTTT  533

seq1: chr13_66462543_66463051
seq2: B6Ng01-228I10.g_690_1205

seq1  AAAGAAGATCAAAGAACCAGCTCTTGG-TTTGATTGATTCTTTGTTCAGT  49
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAAGAAGATCAAAGAACCAGCTCTTGGTTTTGATTGATTCTTTGTTCAGT  50

seq1  ACTTTTAGTTTCTACTTGATTGATTTCAGCCCTGAGTTTGATTATTTCCT  99
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAGTTTCTACTTGATTGATTTCAGCCCTGAGTTTGATTATTTCCT  100

seq1  GCTGTCTACTCTTTTTGAGTGAA-TTTGCTTCCTTTTGTTCTAGAGC-TT  147
      ||||||||||||||||||||||| ||||||||||||||||||||||| ||
seq2  GCTGTCTACTCTTTTTGAGTGAATTTTGCTTCCTTTTGTTCTAGAGCTTT  150

seq1  TCAGGTGTGCTGTCAAGGCTGCTAGTGTATGCTCTCTCCCCTTTCTTTTT  197
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCAGGTGTGCTGTCAA-GCTGCTAGTGTATGCTCTCTCCCCTTTCTTTTT  199

seq1  GGAGGCACTCAGAGCTATGAGTTTTCCTTTT-AGGACTGCGTTTATTGTG  246
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGAGGCACTCAGAGCTATGAGTTTTCCTTTTAAGGACTGCGTTTATTGTG  249

seq1  TCCCATAAATTTGGGTGTACCCATTTTCATTAAACTCTAAAAAGTCATTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATAAATTTGGGTGTACCCATTTTCATTAAACTCTAAAAAGTCATTA  299

seq1  ATTCATTTCTTTATTTCAGTCATAATGGTGTACAAAGTTCATGCCAGCGT  346
      |||||||||||  ||||||||||||||||||||||||||||||| |||||
seq2  ATTCATTTCTTATTTTCAGTCATAATGGTGTACAAAGTTCATGCTAGCGT  349

seq1  TTGAAAAGCAGAGGCAGGCTC--TTACAGGATTGAGGCCTACAAAGTG-T  393
      |||  ||||||||||||||||  | |||||| |||| | ||| ||||| |
seq2  TTG-TAAGCAGAGGCAGGCTCCTTAACAGGA-TGAGACTTAC-AAGTGTT  396

seq1  CTTCAAG-ACAGCCAGGGCTGTTTACACTAAGTAACCATGTAT--GAAAA  440
      ||||||| ||||||||||||||||| ||| ||| ||  |||||  |||||
seq2  CTTCAAGAACAGCCAGGGCTGTTTA-ACT-AGT-ACATTGTATTGGAAAA  443

seq1  G--AATAAAAATAAATTTAA-GAAAGAAAAATACTATTATGAATTAGGTT  487
      |  | ||||| | ||||||| ||||||||| | |  ||||||| ||||| 
seq2  GGAATTAAAATTTAATTTAAGGAAAGAAAATTCCATTTATGAACTAGGTC  493

seq1  CATGAA-TGGGAATAAATTCATA  509
      |||||| ||||||||||||||||
seq2  CATGAACTGGGAATAAATTCATA  516