BAC Information

Click to search

BAC

Clone NameB6Ng01-229J19
Chromosome1 (Build37)
Map Location 69,213,941 - 69,372,608
singlet/doubletdoublet
Overlap genenone
Upstream geneErbb4, LOC667842
Downstream geneEG241084, Ikzf2, Spag16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229J19.bB6Ng01-229J19.g
ACCGA042705GA042706
length1,1451,036
definitionB6Ng01-229J19.b B6Ng01-229J19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,371,452 - 69,372,608)(69,213,941 - 69,214,953)
sequence
gaattcaattacttctaggtagctgatgcttttatgtatttttgtcaatg
atgttgatttactgtggtccagctggatagaaaaacttctgatcatccaa
aggtatcatttggagaatcataaaagatgcatcatgttttcatgcaaaca
taaaaatctgtatatgatcctgtaaacttgtagcaaggtaacaacagaca
acccaggttttaaatagacactatagaacaggaattcccaacactataat
tcaaaaagccaatattcacaaaaaaaattctttgtttgggaaagaaactt
tgaaattacaatgagatgcataaaaacatcaaagtgcacttaaacaaaaa
aaaatcagatgatgctgtcaagaactgtaagaactcatgcaactcccata
ttcatgtcttgtttgtgatatcatttgtagaacttataaaacttaacact
gttttctaaagtggaatgaaaaaaacatagtctagcaattgttctgctgt
gtaaatatcagtcatttatacctctagataagtactcaatgtaagttggt
aacacaatgcttcagccatgtattttggacagtattatatatgatagtac
tacactgaaaaactcctagtatccaccagcagtaaaatgaatgggaacat
gttataatttaagagagagtctactctgtacacatatcacttcattgttt
caatatgttagaaatttcctggcaatgaaattaccggtttacgggtagtt
atccataacagatacatcttggagttgcaatgtaaattgtaagttgtacc
acagaacacatttttatgattccatttatgcaggtgaactggccaatgac
tttaagattcagggaagtacttttctctgttaaactaaaagaggttaaca
gctgggggaggcaggaaaaatcctacaaggtgacttcactatttcatctc
ttaactcgggtaagaaataatatgggtgtgttcacttacatatttctcag
ctgtctactttcgattgtgtacttttccctgtgtgttatagttcaataaa
cctctcaaactacataggaacggaaccatctctgatgaataccacactct
tgatggagtaggactgtacattgaagaaaataattaacttctatt

gaattcctcctggtattcttgctggttctggttgttcctgctgactcatg
ccaattcaacagaggcctggctgtttctgctggatcttgccaccactgtt
gatttatgtttggtgacactttttgaactagactgttggtaccctggcac
tactgaactggactgctggtctcctaacaacagactatggaatcactcca
aagaactacttttaaacaggtccacatcctcttgtcctatttagcatctt
ttctcccctacctttgaacagtgggctagaagcgggtccaagtatttgat
aacccttattaaggtaggttttgaaaaatctaagcctacactgccctttg
ttttcagtttaagactcaaactcatagaatggtgttctacaatggatctt
cattttttagttaaactgttacagtaacttcattacagacactcagagag
atgtgtctcctaagtgatgtcaaacccagtgaaacagacaatggccaacc
atcacactgagtgaacaccatgaagcattttcttttttttttttttccat
tttttattaggtatttaactcatttacatttccaatgctataccaaaagt
cccccatacccacccacccccactcccctgcccacccactccccctttta
ggccctggtgttcccctgtactggggcatataaagtttgcaagtccaatg
ggcctctctttccagtgatggccgactaggccatcttttgatatatatgc
agctagagtcaagagctccgggggtactggttagttcataatgttgttcc
acctatagggttgcagatccctttagctccttgggctactttctctagcc
tccctccattggggagacctatgatccatccattagttgactggtgagcc
atccactttctgttgtttggtaggccccggcatagtctcacagagacagc
tacatcctgggtcctttccatgaattctgcaagggtattgcatgggtgtc
agccgtctggactgctgaattatggaggtggatccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_69371452_69372608
seq2: B6Ng01-229J19.b_47_1191 (reverse)

seq1  AATAGAAAGTTAAATTATTTTCCTCCAAATGTACAGGTCTTACT-CATCA  49
      ||||| ||||| |||||||||| ||  |||||||| ||| |||| |||||
seq2  AATAG-AAGTT-AATTATTTTCTTC--AATGTACA-GTCCTACTCCATCA  45

seq1  AGAAGTGT-GTATTCATCCAGAGAT-GTTCCGTTTCCTATGGTAGTTTTG  97
      || ||||| |||||||| ||||||| |||||| ||||||| |||| ||||
seq2  AG-AGTGTGGTATTCAT-CAGAGATGGTTCCG-TTCCTAT-GTAG-TTTG  90

seq1  AGAGGTTTTATTGAACTATAACACACAGGGAAAAGTACACAATTCGAAAG  147
      ||||| |||||||||||||||||||||||||||||||||||| |||||||
seq2  AGAGG-TTTATTGAACTATAACACACAGGGAAAAGTACACAA-TCGAAAG  138

seq1  TAGACAGCTGAGAAATTATTGTAAAGTGAACACACCCATA-TATTTCTTA  196
      ||||||||||||||||   ||| ||||||||||||||||| |||||||||
seq2  TAGACAGCTGAGAAAT--ATGT-AAGTGAACACACCCATATTATTTCTTA  185

seq1  CCCGAGTTAAGAGATGAAATAGTGAAGTCACCCTTGTAGGATTTTTCCTG  246
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCCGAGTTAAGAGATGAAATAGTGAAGTCA-CCTTGTAGGATTTTTCCTG  234

seq1  CCTCCCCCAGCTGTTAACCTCTTTTAGTTTAACAGAGAAAAGTACTTCCC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCCAGCTGTTAACCTCTTTTAGTTTAACAGAGAAAAGTACTTCCC  284

seq1  TGAATCTTAAAGTCATTGGCCAGTTCACCTGCATAAATGGAATCATAAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTTAAAGTCATTGGCCAGTTCACCTGCATAAATGGAATCATAAAA  334

seq1  ATGTGTTCTGTGGTACAACTTACAATTTACATTGCAACTCCAAGATGTAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTCTGTGGTACAACTTACAATTTACATTGCAACTCCAAGATGTAT  384

seq1  CTGTTATGGATAACTACCCGTAAACCGGTAATTTCATTGCCAGGAAATTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATGGATAACTACCCGTAAACCGGTAATTTCATTGCCAGGAAATTT  434

seq1  CTAACATATTGAAACAATGAAGTGATATGTGTACAGAGTAGACTCTCTCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACATATTGAAACAATGAAGTGATATGTGTACAGAGTAGACTCTCTCT  484

seq1  TAAATTATAACATGTTCCCATTCATTTTACTGCTGGTGGATACTAGGAGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATAACATGTTCCCATTCATTTTACTGCTGGTGGATACTAGGAGT  534

seq1  TTTTCAGTGTAGTACTATCATATATAATACTGTCCAAAATACATGGCTGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGTGTAGTACTATCATATATAATACTGTCCAAAATACATGGCTGA  584

seq1  AGCATTGTGTTACCAACTTACATTGAGTACTTATCTAGAGGTATAAATGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGTGTTACCAACTTACATTGAGTACTTATCTAGAGGTATAAATGA  634

seq1  CTGATATTTACACAGCAGAACAATTGCTAGACTATGTTTTTTTCATTCCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATTTACACAGCAGAACAATTGCTAGACTATGTTTTTTTCATTCCA  684

seq1  CTTTAGAAAACAGTGTTAAGTTTTATAAGTTCTACAAATGATATCACAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAAAACAGTGTTAAGTTTTATAAGTTCTACAAATGATATCACAAA  734

seq1  CAAGACATGAATATGGGAGTTGCATGAGTTCTTACAGTTCTTGACAGCAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACATGAATATGGGAGTTGCATGAGTTCTTACAGTTCTTGACAGCAT  784

seq1  CATCTGATTTTTTTTTGTTTAAGTGCACTTTGATGTTTTTATGCATCTCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGATTTTTTTTTGTTTAAGTGCACTTTGATGTTTTTATGCATCTCA  834

seq1  TTGTAATTTCAAAGTTTCTTTCCCAAACAAAGAATTTTTTTTGTGAATAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATTTCAAAGTTTCTTTCCCAAACAAAGAATTTTTTTTGTGAATAT  884

seq1  TGGCTTTTTGAATTATAGTGTTGGGAATTCCTGTTCTATAGTGTCTATTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTTTGAATTATAGTGTTGGGAATTCCTGTTCTATAGTGTCTATTT  934

seq1  AAAACCTGGGTTGTCTGTTGTTACCTTGCTACAAGTTTACAGGATCATAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTGGGTTGTCTGTTGTTACCTTGCTACAAGTTTACAGGATCATAT  984

seq1  ACAGATTTTTATGTTTGCATGAAAACATGATGCATCTTTTATGATTCTCC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTTTTATGTTTGCATGAAAACATGATGCATCTTTTATGATTCTCC  1034

seq1  AAATGATACCTTTGGATGATCAGAAGTTTTTCTATCCAGCTGGACCACAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATACCTTTGGATGATCAGAAGTTTTTCTATCCAGCTGGACCACAG  1084

seq1  TAAATCAACATCATTGACAAAAATACATAAAAGCATCAGCTACCTAGAAG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCAACATCATTGACAAAAATACATAAAAGCATCAGCTACCTAGAAG  1134

seq1  TAATTGAATTC  1157
      |||||||||||
seq2  TAATTGAATTC  1145


seq1: chr1_69213941_69214953
seq2: B6Ng01-229J19.g_77_1102

seq1  TGGTATTCTTGCTGGTTCTGGTTGTTCCTGCTGACTCATGCCAATTCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTCTTGCTGGTTCTGGTTGTTCCTGCTGACTCATGCCAATTCAAC  50

seq1  AGAGGCCTGGCTGTTTCTGCTGGATCTTGCCACCACTGTTGATTTATGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCTGGCTGTTTCTGCTGGATCTTGCCACCACTGTTGATTTATGTT  100

seq1  TGGTGACACTTTTTGAACTAGACTGTTGGTACCCTGGCACTACTGAACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACACTTTTTGAACTAGACTGTTGGTACCCTGGCACTACTGAACTG  150

seq1  GACTGCTGGTCTCCTAACAACAGACTATGGAATCACTCCAAAGAACTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTGGTCTCCTAACAACAGACTATGGAATCACTCCAAAGAACTACT  200

seq1  TTTAAACAGGTCCACATCCTCTTGTCCTATTTAGCATCTTTTCTCCCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACAGGTCCACATCCTCTTGTCCTATTTAGCATCTTTTCTCCCCTA  250

seq1  CCTTTGAACAGTGGGCTAGAAGCGGGTCCAAGTATTTGATAACCCTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGAACAGTGGGCTAGAAGCGGGTCCAAGTATTTGATAACCCTTATT  300

seq1  AAGGTAGGTTTTGAAAAATCTAAGCCTACACTGCCCTTTGTTTTCAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGGTTTTGAAAAATCTAAGCCTACACTGCCCTTTGTTTTCAGTTT  350

seq1  AAGACTCAAACTCATAGAATGGTGTTCTACAATGGATCTTCATTTTTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCAAACTCATAGAATGGTGTTCTACAATGGATCTTCATTTTTTAG  400

seq1  TTAAACTGTTACAGTAACTTCATTACAGACACTCAGAGAGATGTGTCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTGTTACAGTAACTTCATTACAGACACTCAGAGAGATGTGTCTCC  450

seq1  TAAGTGATGTCAAACCCAGTGAAACAGACAATGGCCAACCATCACACTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGATGTCAAACCCAGTGAAACAGACAATGGCCAACCATCACACTGA  500

seq1  GTGAACACCATGAAGCATTTTCTTTTTTTTTTTTTTCCATTTTTTATTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACACCATGAAGCATTTTCTTTTTTTTTTTTTTCCATTTTTTATTAG  550

seq1  GTATTTAACTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAACTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACC  600

seq1  CACCCACCCCCACTCCCCTGCCCACCCACTCCCCCTTTTAGGCCCTGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACCCCCACTCCCCTGCCCACCCACTCCCCCTTTTAGGCCCTGGTG  650

seq1  TTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTT  700

seq1  TCCAGTGATGGCCGACTAGGCCATCTTTTGATATATATGCAGCTAGAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGATGGCCGACTAGGCCATCTTTTGATATATATGCAGCTAGAGTC  750

seq1  AAGAGCTCC-GGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGG  799
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTCCGGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGG  800

seq1  TTGCAGATCCCTTTAGCTCCTT-GGCTACTTTCTCTAGC--TCCTCCATT  846
      |||||||||||||||||||||| ||||||||||||||||   ||||||||
seq2  TTGCAGATCCCTTTAGCTCCTTGGGCTACTTTCTCTAGCCTCCCTCCATT  850

seq1  -GGGAGACCTATGATCCATCCATTAGTTGACT-GTGAG-CATCCAC-TTC  892
       ||||||||||||||||||||||||||||||| ||||| ||||||| |||
seq2  GGGGAGACCTATGATCCATCCATTAGTTGACTGGTGAGCCATCCACTTTC  900

seq1  TG-TGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCTACAT-CTG  940
      || |||||| ||||||||||||||||||||| |||||||||||||| |||
seq2  TGTTGTTTGGTAGGCCCCGGCATAGTCTCAC-AGAGACAGCTACATCCTG  949

seq1  GGTCCTTTCAATAAAATCTTGCTAGGGTA-TGCAATGGTGTCAG-CGTTT  988
      ||||||||| || || || ||| |||||| ||||  |||||||| ||| |
seq2  GGTCCTTTCCATGAATTC-TGCAAGGGTATTGCATGGGTGTCAGCCGTCT  998

seq1  GGA-TGCTG-ATTATGG-GGTGGATCCC  1013
      ||| ||||| ||||||| ||||||||||
seq2  GGACTGCTGAATTATGGAGGTGGATCCC  1026


| Home | SequenceCutter | Blast | Download |