BAC Information

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BAC

Clone NameB6Ng01-230L10
Chromosome1 (Build37)
Map Location 88,687,731 - 88,802,169
singlet/doubletdoublet
Overlap gene4930429A22Rik
Upstream geneCab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc
Downstream geneEG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230L10.bB6Ng01-230L10.g
ACCGA043507GA043508
length1,160739
definitionB6Ng01-230L10.b B6Ng01-230L10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,801,022 - 88,802,169)(88,687,731 - 88,688,469)
sequence
tacataacaaattcatagaagaaatctaaaggaggagaaaaactaagaga
ttggcttctgtggttctagcatctgctgtaaggcagtactatggcatcaa
gtgactggagctgggaatgttaggccctggaactcacttgaggaggttga
agagtaattctcttgtaagtaaggacagtattctcttcaacctttacagc
cttgttattggcaggtgagagaaatctctgctgtaaaaaaaagggctcta
gataggaacctgggagcagatggccctatgatggcttttccagtactgcg
atctgggtttagtaataaacaggtcttgtaacaatgcttatcagcatgtc
ctgtcttcattgtggagttttgtgtcagtcctgactttgctttctttcat
gtatgctgggtacccagttctcacattctagagtcctaaccttttcctga
cttaccaagaggcagaaaggagttgtgagtgggaattttgggggaaaaag
gctgtaataactcaggctgcagaaattacttttgtgtcatattattagat
ggcacaacggtgattattagggctggaaacaactgaggatagaatcctct
ttcatgatcaattctggaccatacccctcacgtacccctatatttcctat
aagttgtaaccctgctataggcaagctggagagatggcaaaaacatttcc
tttttaccaattcaccacccctgttctttgttagcgaacaaaggctctgc
tacttcttaggactgaaaatgccacatgaaaagatgaggagaattaggac
ttggttgaggcctgttcatggaaagttgctgcatcctagtcaaaagaatg
gcgtgagggctttaactctggccttggtggagacatgccatttctgatct
tcccctaaaattaagagcatttcatactaagagttacttttgatagggtc
tgtcatccacttggttcagaagaccacctctcaggagagctgattcatat
gacgaccccaccaagaagatgggaaggaattaaggattcccacctatgag
ataatgcctatggcttcagaggtctcctcctgggcgagcagttgctaacc
aagtctttactatgcaggtcgagtccacttttctgagcttcttaactcag
aaaccataac
gaattcactaggtttagagatcttatgaagcagaaatttgttttcttaaa
tattaagtgacattgatggggaaagcagcaatagttcaggcaggttttct
aggtgtttgtaaatgggagctagatagaatttttctctttgaatataaaa
tataaattattctgttttctttcttcctttaccttcctccctcctttctt
ccctccttcccttcgcccctccctcccttccttctttccttcctcaaact
tgctgtgtagccaaggataaccttgtctctgcctggagtgctgggattac
aggtatgtactctcatgcctggtttttaaacagtgctacagattaaaccc
agggtttattataaggtatattacaaaagatacagaagcagcccgatgat
agagtgctatggaacagagctgaaatttatatcattttaggtgtgaatgc
ccttatgggggccttattttcaaagcctttgtccccctaagatctatctt
agttttatgttacacttttggagtcaatattgagcaaggacttttagctc
agcacacacagaagcccatatattatgtcagtggattttgggaaacaaac
aaacaaacaaacaaacaaacaaaaaaaaacggtagttaacttttggaagc
caggatctatctgtaagctctcatctgtctcctgcattgacatcagaggt
gttttagagaggggagataagtagtttttgttgatttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_88801022_88802169
seq2: B6Ng01-230L10.b_52_1211 (reverse)

seq1  GTTATGGTTTCTGAGTT-AGAA-CTCAGAAAAGTGGGCTGGCTTGGCATA  48
      ||||||||||||||||| |||| ||||||||||||| || |    |||||
seq2  GTTATGGTTTCTGAGTTAAGAAGCTCAGAAAAGTGGACTCGACCTGCATA  50

seq1  GTAAAGACTT-GTAAGCAACTGCTCG-CCAGGA-GAGACCTCTGGAAAGC  95
      |||||||||| || |||||||||||| |||||| ||||||||| |||  |
seq2  GTAAAGACTTGGTTAGCAACTGCTCGCCCAGGAGGAGACCTCT-GAAGCC  99

seq1  ATAAGCAATTATCTCATA-GTGTG-ATCCTT-ATTCC-TCCCATCTTCTT  141
      ||| || ||||||||||| ||| | |||||| ||||| ||||||||||||
seq2  ATAGGC-ATTATCTCATAGGTGGGAATCCTTAATTCCTTCCCATCTTCTT  148

seq1  GGT-GTGTCCTCATATGAATCAGCTCTCCTGAGAGGTGGTCTTCTG-ACC  189
      ||| | ||| |||||||||||||||||||||||||||||||||||| |||
seq2  GGTGGGGTCGTCATATGAATCAGCTCTCCTGAGAGGTGGTCTTCTGAACC  198

seq1  AAGTGATTGACAGACCCTATC-AAAGTAACTCTTAGTATGGAATGCTC-T  237
      |||||  |||||||||||||| |||||||||||||||||| ||||||| |
seq2  AAGTGGATGACAGACCCTATCAAAAGTAACTCTTAGTATGAAATGCTCTT  248

seq1  AATTTTAGGGGAAGATCAG-AATGGCATGTCTCCACCAAGGCCAGAGTTA  286
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AATTTTAGGGGAAGATCAGAAATGGCATGTCTCCACCAAGGCCAGAGTTA  298

seq1  AAGCCCTCACGCCATTCTTTTGACTAGGATGCAGCAACTTTCCATGAACA  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCTCACGCCATTCTTTTGACTAGGATGCAGCAACTTTCCATGAACA  348

seq1  GGCCTCAACCAAGTCCTAATTCTCCTCATCTTTTCATGTGGCATTTTCAG  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCAACCAAGTCCTAATTCTCCTCATCTTTTCATGTGGCATTTTCAG  398

seq1  TCCTAAGAAGTAGCAGAGCCTTTGTTCGCTAACAAAGAACAGGGGTGGTG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGAAGTAGCAGAGCCTTTGTTCGCTAACAAAGAACAGGGGTGGTG  448

seq1  AATTGGTAAAAAGGAAATGTTTTTGCCATCTCTCCAGCTTGCCTATAGCA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGTAAAAAGGAAATGTTTTTGCCATCTCTCCAGCTTGCCTATAGCA  498

seq1  GGGTTACAACTTATAGGAAATATAGGGGTACGTGAGGGGTATGGTCCAGA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTACAACTTATAGGAAATATAGGGGTACGTGAGGGGTATGGTCCAGA  548

seq1  ATTGATCATGAAAGAGGATTCTATCCTCAGTTGTTTCCAGCCCTAATAAT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATCATGAAAGAGGATTCTATCCTCAGTTGTTTCCAGCCCTAATAAT  598

seq1  CACCGTTGTGCCATCTAATAATATGACACAAAAGTAATTTCTGCAGCCTG  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGTTGTGCCATCTAATAATATGACACAAAAGTAATTTCTGCAGCCTG  648

seq1  AGTTATTACAGCCTTTTTCCCCCAAAATTCCCACTCACAACTCCTTTCTG  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTACAGCCTTTTTCCCCCAAAATTCCCACTCACAACTCCTTTCTG  698

seq1  CCTCTTGGTAAGTCAGGAAAAGGTTAGGACTCTAGAATGTGAGAACTGGG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGGTAAGTCAGGAAAAGGTTAGGACTCTAGAATGTGAGAACTGGG  748

seq1  TACCCAGCATACATGAAAGAAAGCAAAGTCAGGACTGACACAAAACTCCA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGCATACATGAAAGAAAGCAAAGTCAGGACTGACACAAAACTCCA  798

seq1  CAATGAAGACAGGACATGCTGATAAGCATTGTTACAAGACCTGTTTATTA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAGACAGGACATGCTGATAAGCATTGTTACAAGACCTGTTTATTA  848

seq1  CTAAACCCAGATCGCAGTACTGGAAAAGCCATCATAGGGCCATCTGCTCC  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACCCAGATCGCAGTACTGGAAAAGCCATCATAGGGCCATCTGCTCC  898

seq1  CAGGTTCCTATCTAGAGCCCTTTTTTTTACAGCAGAGATTTCTCTCACCT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCCTATCTAGAGCCCTTTTTTTTACAGCAGAGATTTCTCTCACCT  948

seq1  GCCAATAACAAGGCTGTAAAGGTTGAAGAGAATACTGTCCTTACTTACAA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATAACAAGGCTGTAAAGGTTGAAGAGAATACTGTCCTTACTTACAA  998

seq1  GAGAATTACTCTTCAACCTCCTCAAGTGAGTTCCAGGGCCTAACATTCCC  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTACTCTTCAACCTCCTCAAGTGAGTTCCAGGGCCTAACATTCCC  1048

seq1  AGCTCCAGTCACTTGATGCCATAGTACTGCCTTACAGCAGATGCTAGAAC  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAGTCACTTGATGCCATAGTACTGCCTTACAGCAGATGCTAGAAC  1098

seq1  CACAGAAGCCAATCTCTTAGTTTTTCTCCTCCTTTAGATTTCTTCTATGA  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAGCCAATCTCTTAGTTTTTCTCCTCCTTTAGATTTCTTCTATGA  1148

seq1  ATTTGTTATGTA  1148
      ||||||||||||
seq2  ATTTGTTATGTA  1160

seq1: chr1_88687731_88688469
seq2: B6Ng01-230L10.g_68_806

seq1  GAATTCACTAGGTTTTGTGATCTTATGAAGCAGAAATTTGTTTTCTTAAA  50
      ||||||||||||||| | ||||||||||||||||||||||||||||||||
seq2  GAATTCACTAGGTTTAGAGATCTTATGAAGCAGAAATTTGTTTTCTTAAA  50

seq1  TATTAAGTGACATTGATGGGGAAAGCAGCAATAGTTCAGGCAGGTTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGTGACATTGATGGGGAAAGCAGCAATAGTTCAGGCAGGTTTTCT  100

seq1  AGGTGTTTGTAAATGGGAGCTAGATAGAATTTTTCTCTTTGAATATAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTTGTAAATGGGAGCTAGATAGAATTTTTCTCTTTGAATATAAAA  150

seq1  TATAAATTATTCTGTTTTCTTTCTTCCTTTACCTTCCTCCCTCCTTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATTATTCTGTTTTCTTTCTTCCTTTACCTTCCTCCCTCCTTTCTT  200

seq1  CCCTCCTTCCCTTCGCCCCTCCCTCCCTTCCTTCTTTCCTTCCTCAAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTTCCCTTCGCCCCTCCCTCCCTTCCTTCTTTCCTTCCTCAAACT  250

seq1  TGCTGTGTAGCCAAGGATAACCTTGTCTCTGCCTGGAGTGCTGGGATTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGTAGCCAAGGATAACCTTGTCTCTGCCTGGAGTGCTGGGATTAC  300

seq1  AGGTATGTACTCTCATGCCTGGTTTTTAAACAGTGCTACAGATTAAACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATGTACTCTCATGCCTGGTTTTTAAACAGTGCTACAGATTAAACCC  350

seq1  AGGGTTTATTATAAGGTATATTACAAAAGATACAGAAGCAGCCCGATGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTATTATAAGGTATATTACAAAAGATACAGAAGCAGCCCGATGAT  400

seq1  AGAGTGCTATGGAACAGAGCTGAAATTTATATCATTTTAGGTGTGAATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGCTATGGAACAGAGCTGAAATTTATATCATTTTAGGTGTGAATGC  450

seq1  CCTTATGGGGGCCTTATTTTCAAAGCCTTTGTCCCCCTAAGATCTATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATGGGGGCCTTATTTTCAAAGCCTTTGTCCCCCTAAGATCTATCTT  500

seq1  AGTTTTATGTTACACTTTTGGAGTCAATATTGAGCAAGGACTTTTAGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTATGTTACACTTTTGGAGTCAATATTGAGCAAGGACTTTTAGCTC  550

seq1  AGCACACACAGAAGCCCATATATTATGTCAGTGGATTTTGGGAAACAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACACAGAAGCCCATATATTATGTCAGTGGATTTTGGGAAACAAAC  600

seq1  AAACAAACAAACAAACAAACAAAAAAAAACGGTAGTTAACTTTTGGAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACAAACAAACAAAAAAAAACGGTAGTTAACTTTTGGAAGC  650

seq1  CAGGATCTATCTGTAAGCTCTCATCTGTCTCCTGCATTGACATCAGAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATCTATCTGTAAGCTCTCATCTGTCTCCTGCATTGACATCAGAGGT  700

seq1  GTTTTAGAGAGGGGAGATAAGTAGTTTTTGTTGATTTGC  739
      |||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGAGAGGGGAGATAAGTAGTTTTTGTTGATTTGC  739