BAC Information

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BAC

Clone NameB6Ng01-230N04
Chromosome1 (Build37)
Map Location 194,720,239 - 194,850,382
singlet/doubletdoublet
Overlap geneSyt14
Upstream gene4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5, Traf5, LOC100042625, Rcor3, Kcnh1, Hhat, A730013G03Rik, Sertad4, LOC100039677
Downstream geneAA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3, Camk1g, LOC667208
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230N04.bB6Ng01-230N04.g
ACCGA043586GA043587
length1,1021,163
definitionB6Ng01-230N04.b B6Ng01-230N04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(194,720,239 - 194,721,356)(194,849,236 - 194,850,382)
sequence
gaattcttcagtctatggaggtaaatggtagtttatgcaaatgaactttg
tgttatttttattaatacctgaacaagaattaaaaaaaaaaagttggtga
ccactgggcttacaccacttcaaacagctcacctatctcttagtcccctc
ataaagttgtgataccatttgtattccttgccgagaacatcctagactgt
ctccgcttccctactgatgaattcgcattcccaagccctagctatactcc
cagtttgtggaagcaccagtgatttagcagacagagctgggttttgcaca
gatcagatcagactccctgccagggcccaactttacaacgacagcatagg
tatccaggcagcttaagtattttctgtttctttaaacatggcctaataac
ttcttttgtcagtgagcacagtgctactgaaaactcatcaatgtgcagtg
agataatatgcaattgtatttcaaatagaaggtgactagtattcaggcac
cagactgcagaagcttctgaaagtttggacaatactgcacttctggacag
tgatcaacaaaccgcgtcagggaagttaagaaacgaggctcttgaataac
catataccagttagttgttgaatctggacatttcatttgactttagcaga
ataataagggtgtagactgtcattttcaagttcccaagtcaacatctgtg
gcccagataatttggagaagtatttgtgttaaagcccaggagagaataag
ttgtatacttgctttatatgcagcagaatggcagcatttggctacaaacc
tagtatcacatttagaagttacacagagaagaaaagcagcaatccatgat
cagtggaaatgcctttctggtcagttatgtgtaaaggcaggacagcctca
cctttacatgttgcacagcatgctacgtgtgtagtataatgcacatacat
aatttatatcatgagactggcaaatgggataggaggggggcctttccaat
gtagaagactgatcattcaaggcatatatgaagtgaatactacccatgca
gaatccttgaggatttttggagtatacagagttctggatcaactgtagga
ag
gaattctgtggatttccatcatactgggaaaaaaaatcaaggtgcctcct
catctggtccacaaaacagacttcaagtccagcatgtcttctacacacca
tcagctcagaggtataaagtatctgtataaaaatgtatatgagaacttac
tcctggagacccatgaatagagggactctgaagaggaattttgcaaattt
tcttaccttgtatatggtactcgtcttagttattttttgttatggtgata
aaatactcttgggaaagcagcttgaggggaaaagggctaattttgattca
cagttccatgtataggccatcatggctgggaagttatggaggcaggagct
tgaaacatctggttacattgcatatgccatcagaaaacaggagatgacta
atgtaccagctggctttctcctttttatgcagtccaggacccaagctcag
gaaatggtgatgcccaatattagtgtgggtccttttacatcagttaagct
aaccaagataatctcttacagatctgtccagaggctgaccaaaatattcc
aggcaccctacctctgagatccattcctgccataaaggagctctgattgc
tggctttctcttaaattcccacctgtcaacttataataaagtatttttaa
cctcaaaataaactaaaataaataaccctcacaagtgtgtctggaatctt
acattctaggtgattcctagttgtcaacggacaatagccatcacaatacc
cttttgcattcccaccagaagtacatgaactctatgctctgtcagcattg
tctttggatatattttgttggtattgctgctgttaatctggtattagaaa
aatatagtttcagtgtcatttggattttccatttttccttaggagaatgc
agtgtctgaactccgtttgcagagtatatcaatgatctgaaagataccag
aagaccctgctgcttcagaaaatatctgcctactgttctatagctttcat
cccttaatatttgctaaatttgggtgtatataattctttgaaataatatg
aaagaggaaagggttcttctgggcaattgttatctaaacatattccacca
cagtcaatccagatcattttgcttcccatggtgggtaataggaaattaca
gaacctgagcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_194720239_194721356
seq2: B6Ng01-230N04.b_48_1149

seq1  GAATTCTTCAGTCTATGGAGGTAAATGGTAGTTTATGCAAATGAACTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGTCTATGGAGGTAAATGGTAGTTTATGCAAATGAACTTTG  50

seq1  TGTTATTTTTATTAATACCTGAACAAGAATTAAAAAAAAAAAGTTGGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTTTTATTAATACCTGAACAAGAATTAAAAAAAAAAAGTTGGTGA  100

seq1  CCACTGGGCTTACACCACTTCAAACAGCTCACCTATCTCTTAGTCCCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGGCTTACACCACTTCAAACAGCTCACCTATCTCTTAGTCCCCTC  150

seq1  ATAAAGTTGTGATACCATTTGTATTCCTTGCCGAGAACATCCTAGACTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTTGTGATACCATTTGTATTCCTTGCCGAGAACATCCTAGACTGT  200

seq1  CTCCGCTTCCCTACTGATGAATTCGCATTCCCAAGCCCTAGCTATACTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGCTTCCCTACTGATGAATTCGCATTCCCAAGCCCTAGCTATACTCC  250

seq1  CAGTTTGTGGAAGCACCAGTGATTTAGCAGACAGAGCTGGGTTTTGCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGTGGAAGCACCAGTGATTTAGCAGACAGAGCTGGGTTTTGCACA  300

seq1  GATCAGATCAGACTCCCTGCCAGGGCCCAACTTTACAACGACAGCATAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGATCAGACTCCCTGCCAGGGCCCAACTTTACAACGACAGCATAGG  350

seq1  TATCCAGGCAGCTTAAGTATTTTCTGTTTCTTTAAACATGGCCTAATAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAGGCAGCTTAAGTATTTTCTGTTTCTTTAAACATGGCCTAATAAC  400

seq1  TTCTTTTGTCAGTGAGCACAGTGCTACTGAAAACTCATCAATGTGCAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTGTCAGTGAGCACAGTGCTACTGAAAACTCATCAATGTGCAGTG  450

seq1  AGATAATATGCAATTGTATTTCAAATAGAAGGTGACTAGTATTCAGGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATATGCAATTGTATTTCAAATAGAAGGTGACTAGTATTCAGGCAC  500

seq1  CAGACTGCAGAAGCTTCTGAAAGTTTGGACAATACTGCACTTCTGGACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGCAGAAGCTTCTGAAAGTTTGGACAATACTGCACTTCTGGACAG  550

seq1  TGATCAACAAACCGCGTCAGGGAAGTTAAGAAACGAGGCTCTTGAATAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAACAAACCGCGTCAGGGAAGTTAAGAAACGAGGCTCTTGAATAAC  600

seq1  CATATACCAGTTAGTTGTTGAATCTGGACATTTCATTTGACTTTAGCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACCAGTTAGTTGTTGAATCTGGACATTTCATTTGACTTTAGCAGA  650

seq1  ATAATAAGGGTGTAGACTGTCATTTTCAAGTTCCCAAGTCAACATCTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAGGGTGTAGACTGTCATTTTCAAGTTCCCAAGTCAACATCTGTG  700

seq1  GCCCAGATAATTTGGAGAAGTATTTGTGTTAAAGCCCAGGAGAGAATAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGATAATTTGGAGAAGTATTTGTGTTAAAGCCCAGGAGAGAATAAG  750

seq1  TTGTATACTTGCTTTATATGCAGCAGAATGGCAGCATTTGGCTACAAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATACTTGCTTTATATGCAGCAGAATGGCAGCATTTGGCTACAAACC  800

seq1  TAGTATCACATTTAGAAGTTACACAGAGAAGAAAAGCAGCAATCCATGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATCACATTTAGAAGTTACACAGAGAAGAAAAGCAGCAATCCATGAT  850

seq1  CAGTGGAAATGCCTTTCTGGTCAGTTATGTGTAAAGGCAGGACAGCCTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAAATGCCTTTCTGGTCAGTTATGTGTAAAGGCAGGACAGCCTCA  900

seq1  CCTTTACATG-TGCACAGCATGCTACGTGTGTAGTTATATGCACATACAT  949
      |||||||||| ||||||||||||||||||||||||   ||||||||||||
seq2  CCTTTACATGTTGCACAGCATGCTACGTGTGTAGTATAATGCACATACAT  950

seq1  AATTTATAATCATTGAGGACTTGGCAAATGGGATA-GAGGGGGGCTTTTC  998
      ||||||| |||| ||| ||| |||||||||||||| ||||||||| ||| 
seq2  AATTTAT-ATCA-TGA-GAC-TGGCAAATGGGATAGGAGGGGGGCCTTT-  995

seq1  CCAATGTTAAAGAAGACTGAATCAATTTCCAGGCCATATATGAAGTG-AT  1047
      |||||||   ||||||||| ||||  ||| ||| ||||||||||||| ||
seq2  CCAATGT---AGAAGACTG-ATCA--TTCAAGG-CATATATGAAGTGAAT  1038

seq1  ACTTACACCATGCCAGATACCCCTGAGGATTTTTGGGAGTATACAGAGTT  1097
      || ||| ||||| |||| | || ||||||||||| |||||||||||||||
seq2  AC-TAC-CCATG-CAGA-ATCCTTGAGGATTTTT-GGAGTATACAGAGTT  1083

seq1  CTGGGTCCACTCTGTAGGAAG  1118
      |||| || |  ||||||||||
seq2  CTGGATCAA--CTGTAGGAAG  1102

seq1: chr1_194849236_194850382
seq2: B6Ng01-230N04.g_65_1227 (reverse)

seq1  CATGCTCCAGGTCTGTAA-TTCCTATT-CCCACAAT-GGAAGCAAAATAA  47
      |||||||  | ||||||| |||||||| ||||| || ||||||||||| |
seq2  CATGCTCAGGTTCTGTAATTTCCTATTACCCACCATGGGAAGCAAAATGA  50

seq1  TCT-GATTTACTGTGGTG--ATATGTTTAGATAACAAT--GCCAGAAGA-  91
      ||| |||| |||||||||  ||||||||||||||||||   |||||||| 
seq2  TCTGGATTGACTGTGGTGGAATATGTTTAGATAACAATTGCCCAGAAGAA  100

seq1  -CCTTT-CTCTTTCAATATATTTCAAAG-ATTATATACACCCAAATTTAG  138
       ||||| ||||||||   |||||||||| |||||||||||||||||||||
seq2  CCCTTTCCTCTTTCATATTATTTCAAAGAATTATATACACCCAAATTTAG  150

seq1  CAAATATTAAAGGATGAAAGCTATAGAACAGTAGGCAGATA-TTTCTGAA  187
      |||||||||| |||||||||||||||||||||||||||||| ||||||||
seq2  CAAATATTAAGGGATGAAAGCTATAGAACAGTAGGCAGATATTTTCTGAA  200

seq1  GCAGCAGGTTCTTCTGGTATCTTTCAGATCATTGATATACTCTGCAAACG  237
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGGGTCTTCTGGTATCTTTCAGATCATTGATATACTCTGCAAACG  250

seq1  GAGTTCAGACACTGCATTCTCCTAA-GAAAAAT-GAAAATCCAAATGACA  285
      ||||||||||||||||||||||||| ||||||| ||||||||||||||||
seq2  GAGTTCAGACACTGCATTCTCCTAAGGAAAAATGGAAAATCCAAATGACA  300

seq1  CTG-AACTATATTTTTCTAATACCAGATTAACAGCAGCAATACCAACAAA  334
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACTATATTTTTCTAATACCAGATTAACAGCAGCAATACCAACAAA  350

seq1  ATATATCCAAAGACAATGCTGACAGAGCATAGAGTTCATGTACTTCTGGT  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCCAAAGACAATGCTGACAGAGCATAGAGTTCATGTACTTCTGGT  400

seq1  GGGAATGCAAAAGGGTATTGTGATGGCTATTGTCCGTTGACAACTAGGAA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGCAAAAGGGTATTGTGATGGCTATTGTCCGTTGACAACTAGGAA  450

seq1  TCACCTAGAATGTAAGATTCCAGACACACTTGTGAGGGTTATTTATTTTA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTAGAATGTAAGATTCCAGACACACTTGTGAGGGTTATTTATTTTA  500

seq1  GTTTATTTTGAGGTTAAAAATACTTTATTATAAGTTGACAGGTGGGAATT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTTTGAGGTTAAAAATACTTTATTATAAGTTGACAGGTGGGAATT  550

seq1  TAAGAGAAAGCCAGCAATCAGAGCTCCTTTATGGCAGGAATGGATCTCAG  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAAAGCCAGCAATCAGAGCTCCTTTATGGCAGGAATGGATCTCAG  600

seq1  AGGTAGGGTGCCTGGAATATTTTGGTCAGCCTCTGGACAGATCTGTAAGA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGGTGCCTGGAATATTTTGGTCAGCCTCTGGACAGATCTGTAAGA  650

seq1  GATTATCTTGGTTAGCTTAACTGATGTAAAAGGACCCACACTAATATTGG  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATCTTGGTTAGCTTAACTGATGTAAAAGGACCCACACTAATATTGG  700

seq1  GCATCACCATTTCCTGAGCTTGGGTCCTGGACTGCATAAAAAGGAGAAAG  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCACCATTTCCTGAGCTTGGGTCCTGGACTGCATAAAAAGGAGAAAG  750

seq1  CCAGCTGGTACATTAGTCATCTCCTGTTTTCTGATGGCATATGCAATGTA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGGTACATTAGTCATCTCCTGTTTTCTGATGGCATATGCAATGTA  800

seq1  ACCAGATGTTTCAAGCTCCTGCCTCCATAACTTCCCAGCCATGATGGCCT  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGATGTTTCAAGCTCCTGCCTCCATAACTTCCCAGCCATGATGGCCT  850

seq1  ATACATGGAACTGTGAATCAAAATTAGCCCTTTTCCCCTCAAGCTGCTTT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGGAACTGTGAATCAAAATTAGCCCTTTTCCCCTCAAGCTGCTTT  900

seq1  CCCAAGAGTATTTTATCACCATAACAAAAAATAACTAAGACGAGTACCAT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGAGTATTTTATCACCATAACAAAAAATAACTAAGACGAGTACCAT  950

seq1  ATACAAGGTAAGAAAATTTGCAAAATTCCTCTTCAGAGTCCCTCTATTCA  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGGTAAGAAAATTTGCAAAATTCCTCTTCAGAGTCCCTCTATTCA  1000

seq1  TGGGTCTCCAGGAGTAAGTTCTCATATACATTTTTATACAGATACTTTAT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTCCAGGAGTAAGTTCTCATATACATTTTTATACAGATACTTTAT  1050

seq1  ACCTCTGAGCTGATGGTGTGTAGAAGACATGCTGGACTTGAAGTCTGTTT  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGAGCTGATGGTGTGTAGAAGACATGCTGGACTTGAAGTCTGTTT  1100

seq1  TGTGGACCAGATGAGGAGGCACCTTGATTTTTTTTCCCAGTATGATGGAA  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACCAGATGAGGAGGCACCTTGATTTTTTTTCCCAGTATGATGGAA  1150

seq1  ATCCACAGAATTC  1147
      |||||||||||||
seq2  ATCCACAGAATTC  1163