BAC Information

Click to search

BAC

Clone NameB6Ng01-232G12
Chromosome1 (Build37)
Map Location 18,356,973 - 18,501,588
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383495, Rbm6-ps1, Ppia-ps1_125.1, Pi15, Crispld1, LOC665564, LOC100040126, Crisp4, EG574082, EG654460, Defb17
Downstream geneLOC383499, EG435611, LOC100040189, Tcfap2d, LOC100040413, Tcfap2b, LOC100040198, LOC226901
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232G12.bB6Ng01-232G12.g
ACCGA044753GA044754
length1,0261,082
definitionB6Ng01-232G12.b B6Ng01-232G12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,500,871 - 18,501,588)(18,356,973 - 18,358,061)
sequence
gaattcatccaagggcacctgccaatcacttggaatagcaaaatgtttgt
caagagaagttgtctgtttcagagatctcagacttaacaaaaagcctgaa
taaatagtaaatgaggtgagcctagtagtcaccttggccattgtgcatcc
ttgcttatagagaccgtgctttatgatgatggtccatttgactattgccg
tttagagtactcttaactctttagagtgcttcatgttactgtagaataaa
cactaatatctttaacactaaactgtctgtctcatctaaattcatttccc
ccaaattacaagcaaactgaggggaggccagactgagatcatggtgagac
tatcaactaaatgacctagatgtatttcgaaaaataatccacagcacatg
gcaatcagactatgaaagagaagatttgctttaatgagtaacagagatcc
aggtcatgaggatgagtttacaaaattcagagtaatgaccataaaactcc
tcaaatgtgatgggactgctactgagtagctgagagatgggctgagtaaa
acaggagagtgtgactcatcagattgctaatgagaaccattcttttttta
ttagatattttctttatttacatttcaaatgctatccctaaagttccctg
taccctgccccttccctgctcccttacccacccactcccacttcttggcc
ctggcatttccctgttcttgggcatataaagtttgcaagaccaaggggcc
tctcttcccaatgatgaccaactaggccatcctctgttacatatgcaggt
agagacacaagctctgggggtactgattagttcatattgttgaggaagac
caacgtgtggatactttccttcctccttagaatagggaacaaaataccta
tggaaggagtaacagagacaaagttgaagctaaatgaaaggatgaaaacc
attcttggattaagaaaaaaagtttctgatgactttggttaagcagcaga
agtcttttgtagtgtaaattattgta

gaattcagtgtctgctcaattttagaactgggtctcagtgcagtcctgta
ggaaaggagaaaacatagctgtcctctgtacagctgagaggatggagatt
ttagttcattaaactgttggtaggttcaaagaactccaactaattattct
acttctctcctgggatgaagttctctttagacagaagtttaaaaaaaaat
ccatataagtggaaattctgttattttccctgtcttctctccctgatcct
gttagcattaggctgcaaagagtatcttgtacaaagtccactgatcagac
tgtattccacagacaaaaaagttgctgggaagagaactcataattgtact
ctttctaactttttattaaattgcctaaagtgaatttatttagttaatat
taaagaggctcatgttcctctgcccttggtaaaagtccaaaagtcattgt
catgatcagacaaataagggagtatactcttcagggcttcacaatggcct
tctgtatctacatgtatcatgctgaggctctgtttttattagataaacga
gtatacaaatgctgaatgattttaggaaattatccctggaactataaaag
tttaaatgtgcaaaaacattttaaattgtctaccttaatctttcttttat
gtgcataagtcttttgccttatgtggttttgtgcacagaggtcagaagaa
taaatcacattctttgagactgttgagagctgacatattcatgctgagaa
agaactcagatcctctcaaagacaagcctgcattctgagccactaagcca
tctctaaggccctgtgtgggaatattcttataagctataatatgctatat
ggatacaagaacttattgcctacaaattgaaaagtaaagtaagaaattaa
aaatggtgaaaactctgcaatgatgtatgggacattactttacccaggga
taaaattattattccatagaggtttagagatgaaaatttcttccagaaca
agtgttgatgatttctttttatcccaaagtcccagattcttcttatcagc
actttgctaaatgatgttttgccccacctcgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_18500871_18501588
seq2: B6Ng01-232G12.b_44_761 (reverse)

seq1  AGAACAGGGAAATGCCAGGGCCAAGAAGTGGGAGTGGGTGGGTAAGGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGGGAAATGCCAGGGCCAAGAAGTGGGAGTGGGTGGGTAAGGGAG  50

seq1  CAGGGAAGGGGCAGGGTACAGGGAACTTTAGGGATAGCATTTGAAATGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAGGGGCAGGGTACAGGGAACTTTAGGGATAGCATTTGAAATGTA  100

seq1  AATAAAGAAAATATCTAATAAAAAAAGAATGGTTCTCATTAGCAATCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGAAAATATCTAATAAAAAAAGAATGGTTCTCATTAGCAATCTGA  150

seq1  TGAGTCACACTCTCCTGTTTTACTCAGCCCATCTCTCAGCTACTCAGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCACACTCTCCTGTTTTACTCAGCCCATCTCTCAGCTACTCAGTAG  200

seq1  CAGTCCCATCACATTTGAGGAGTTTTATGGTCATTACTCTGAATTTTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCATCACATTTGAGGAGTTTTATGGTCATTACTCTGAATTTTGTA  250

seq1  AACTCATCCTCATGACCTGGATCTCTGTTACTCATTAAAGCAAATCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATCCTCATGACCTGGATCTCTGTTACTCATTAAAGCAAATCTTCT  300

seq1  CTTTCATAGTCTGATTGCCATGTGCTGTGGATTATTTTTCGAAATACATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATAGTCTGATTGCCATGTGCTGTGGATTATTTTTCGAAATACATC  350

seq1  TAGGTCATTTAGTTGATAGTCTCACCATGATCTCAGTCTGGCCTCCCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCATTTAGTTGATAGTCTCACCATGATCTCAGTCTGGCCTCCCCTC  400

seq1  AGTTTGCTTGTAATTTGGGGGAAATGAATTTAGATGAGACAGACAGTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCTTGTAATTTGGGGGAAATGAATTTAGATGAGACAGACAGTTTA  450

seq1  GTGTTAAAGATATTAGTGTTTATTCTACAGTAACATGAAGCACTCTAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAAAGATATTAGTGTTTATTCTACAGTAACATGAAGCACTCTAAAG  500

seq1  AGTTAAGAGTACTCTAAACGGCAATAGTCAAATGGACCATCATCATAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAGAGTACTCTAAACGGCAATAGTCAAATGGACCATCATCATAAAG  550

seq1  CACGGTCTCTATAAGCAAGGATGCACAATGGCCAAGGTGACTACTAGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTCTCTATAAGCAAGGATGCACAATGGCCAAGGTGACTACTAGGCT  600

seq1  CACCTCATTTACTATTTATTCAGGCTTTTTGTTAAGTCTGAGATCTCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCATTTACTATTTATTCAGGCTTTTTGTTAAGTCTGAGATCTCTGA  650

seq1  AACAGACAACTTCTCTTGACAAACATTTTGCTATTCCAAGTGATTGGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACAACTTCTCTTGACAAACATTTTGCTATTCCAAGTGATTGGCAG  700

seq1  GTGCCCTTGGATGAATTC  718
      ||||||||||||||||||
seq2  GTGCCCTTGGATGAATTC  718


seq1: chr1_18356973_18358061
seq2: B6Ng01-232G12.g_71_1152

seq1  GAATTCAGTGTCTGCTCAATTTTAGAACTGGGTCTCAGTGCAGTCCTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTCTGCTCAATTTTAGAACTGGGTCTCAGTGCAGTCCTGTA  50

seq1  GGAAAGGAGAAAACATAGCTGTCCTCTGTACAGCTGAGAGGATGGAGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGAGAAAACATAGCTGTCCTCTGTACAGCTGAGAGGATGGAGATT  100

seq1  TTAGTTCATTAAACTGTTGGTAGGTTCAAAGAACTCCAACTAATTATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTCATTAAACTGTTGGTAGGTTCAAAGAACTCCAACTAATTATTCT  150

seq1  ACTTCTCTCCTGGGATGAAGTTCTCTTTAGACAGAAGTTTAAAAAAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCTCCTGGGATGAAGTTCTCTTTAGACAGAAGTTTAAAAAAAAAT  200

seq1  CCATATAAGTGGAAATTCTGTTATTTTCCCTGTCTTCTCTCCCTGATCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATAAGTGGAAATTCTGTTATTTTCCCTGTCTTCTCTCCCTGATCCT  250

seq1  GTTAGCATTAGGCTGCAAAGAGTATCTTGTACAAAGTCCACTGATCAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCATTAGGCTGCAAAGAGTATCTTGTACAAAGTCCACTGATCAGAC  300

seq1  TGTATTCCACAGACAAAAAAGTTGCTGGGAAGAGAACTCATAATTGTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCCACAGACAAAAAAGTTGCTGGGAAGAGAACTCATAATTGTACT  350

seq1  CTTTCTAACTTTTTATTAAATTGCCTAAAGTGAATTTATTTAGTTAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAACTTTTTATTAAATTGCCTAAAGTGAATTTATTTAGTTAATAT  400

seq1  TAAAGAGGCTCATGTTCCTCTGCCCTTGGTAAAAGTCCAAAAGTCATTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGGCTCATGTTCCTCTGCCCTTGGTAAAAGTCCAAAAGTCATTGT  450

seq1  CATGATCAGACAAATAAGGGAGTATACTCTTCAGGGCTTCACAATGGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATCAGACAAATAAGGGAGTATACTCTTCAGGGCTTCACAATGGCCT  500

seq1  TCTGTATCTACATGTATCATGCTGAGGCTCTGTTTTTATTAGATAAACGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATCTACATGTATCATGCTGAGGCTCTGTTTTTATTAGATAAACGA  550

seq1  GTATACAAATGCTGAATGATTTTAGGAAATTATCCCTGGAACTATAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACAAATGCTGAATGATTTTAGGAAATTATCCCTGGAACTATAAAAG  600

seq1  TTTAAATGTGCAAAAACATTTTAAATTGTCTACCTTAATCTTTCTTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGTGCAAAAACATTTTAAATTGTCTACCTTAATCTTTCTTTTAT  650

seq1  GTGCATAAGTCTTTTGCCTTATGTGGTTTTGTGCACAGAGGTCAGAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATAAGTCTTTTGCCTTATGTGGTTTTGTGCACAGAGGTCAGAAGAA  700

seq1  TAAATCACATTCTTTGAGACTGTTGAGAGCTGACATATTCATGCTGAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCACATTCTTTGAGACTGTTGAGAGCTGACATATTCATGCTGAGAA  750

seq1  AGAACTCAGATCCTCTCAAAGACAAGCCTGCATTCTGAGCCACTAAGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCAGATCCTCTCAAAGACAAGCCTGCATTCTGAGCCACTAAGCCA  800

seq1  TCTCTAAGGCCCTGTGTGGGAATATTCTTATAAGCTATAATATGCTATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAAGGCCCTGTGTGGGAATATTCTTATAAGCTATAATATGCTATAT  850

seq1  GGATACAAGAACTTATTGCCTACAAATTGAAAAGTAAAGTAAGAAATTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACAAGAACTTATTGCCTACAAATTGAAAAGTAAAGTAAGAAATTAA  900

seq1  AAATGGTGAAAACTCTGCAATGATGTATGGGACATTACTTTACCCAGGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTGAAAACTCTGCAATGATGTATGGGACATTACTTTACCCAGGGA  950

seq1  TAAAATTATTATTCCATAGAGGTTTAGAGATGAAAATTTCTTCCCAGAAC  1000
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAAAATTATTATTCCATAGAGGTTTAGAGATGAAAATTTCTT-CCAGAAC  999

seq1  AAGTGTTGAAGGATTTC-TTTTATCCCAAAAGTCCCAGATCTCTTAATTC  1049
      |||||||| | |||||| ||||||||| |||||||||||| ||||  |  
seq2  AAGTGTTG-ATGATTTCTTTTTATCCC-AAAGTCCCAGAT-TCTTCTTAT  1046

seq1  CAGGCACTTTGCTTAAAAATGATGTTTTGCCCCACCTCGG  1089
      || ||||||||||   ||||||||||||||||||||||||
seq2  CA-GCACTTTGCT---AAATGATGTTTTGCCCCACCTCGG  1082


| Home | SequenceCutter | Blast | Download |