BAC Information

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BAC

Clone NameB6Ng01-232I16
Chromosome4 (Build37)1 (Build37)
Map Location 106,630,520 - 106,630,64678,611,496 - 78,612,607
singlet/doubletsingletsinglet
Overlap geneSsbp3
Upstream geneMap1lc3, LOC384039, Usp24, LOC100039616, Pcsk9, Bsnd, Tmem61, Dhcr24, BC055111, Ttc22, Pars2, Ttc4, Gm1027, BC026682, Acot11
Downstream geneMrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48, Glis1, Dmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232I16.bB6Ng01-232I16.g
ACCGA044852GA044853
length2591,138
definitionB6Ng01-232I16.b B6Ng01-232I16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(106,630,520 - 106,630,646)(78,611,496 - 78,612,607)
sequence
tcaacagaggaatggccagaagcacttaaagaaatgttcgaagtccttag
tcatcagagaaatgccaatcaaaacgaccctgagattcccatcttacacc
catcagaatggttaagaccggcagtggtagtgcacaccttttatcccagc
ttttgggaggcagaggcagatggatttctgagttcgaagccaacctggtc
tacagagtttcaggacagccagggctaaacagagaaaccctgtatcgaaa
aaccaaaaa
gaattcaagaagcaggacatcagtatttgagaagcagaggcaagaggatt
ctgagttccgggtttggctctgttgcaaaccccaaccccacccccacccc
caaccaccaccacctgtcttggttacttttctcgttgacatgctcagata
accgacaagaggctccctaaggaagggagggcttttgccatttgtgtttg
tttatctttgcttatagttctagtggctgcaatccgtcaggacagagaag
gtctggtgacagagagcagagggaggctagttatattgtgtccacggtca
ggaagcaaaaagagacgaaggccactgatgaagtgttcagcttgctttgt
cccctttttaaaaacctactttatttattactttatttattcattgtttg
tgtacatgtatgctcataacaacttgcaggactcagtactcacctaccaa
catgtacgctccagggatcgaactcaggtcacccagcttagcagcaagca
cctttgcctgctagccattcctcgggccctgcttttgtttttctagtgag
accaggactccagccctcagaatggctccttccacattcaaggtgggtct
tgtcacgtgaagtaacctaatctaactcccctcactgcggatacccggaa
gcttgtttcctacgtgattctagaccttatcaagttgacaatcattacta
accagcacactatttcagaaaaactaaaaccgggggctaagtatgtagca
cagtttgtagaacacttgtcttgcatgactgatggtccccagcaccacat
aaaaccaacgagtggtgcatactttgtaatactaatatttgggatcatga
gttcaaagccagcctcacctagataatgagttcaagtccagcctgggatg
gcacgagatgctgtttcaggcaaacacacaaacaataaacaattattata
aattaatcagaagttaaacctgttgaatcatgggacaatagaaacaaagc
ctttgggctcttggtgaacaccctttggattcaaaaccacttttggcttg
caagtgtgaagtatatcattttctttcaggccactggaagcagaagaaac
gggaaaattgaagcagaattcttgtattgacgagagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_106630520_106630646
seq2: B6Ng01-232I16.b_183_305 (reverse)

seq1  TTTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGG  50
      ||||||||||||||| ||||||||||||||| ||||||||||||||||| 
seq2  TTTTTGGTTTTTCGATACAGGGTTTCTCTGTTTAGCCCTGGCTGTCCTGA  50

seq1  AACTCACTCTGTAGACCAGACTGGCCTTGAACTCAGAAATCCACCTGCCT  100
      |    ||||||||||||||  |||| | ||||||||||||||| ||||||
seq2  A----ACTCTGTAGACCAGGTTGGCTTCGAACTCAGAAATCCATCTGCCT  96

seq1  CTGCCTCCCAAGTGCTGGGATGAAAGG  127
      |||||||||||  |||||||| |||||
seq2  CTGCCTCCCAAAAGCTGGGATAAAAGG  123

seq1: chr1_78611496_78612607
seq2: B6Ng01-232I16.g_71_1208

seq1  GAATTCAAGAAGCAGGACATCAGTATTTGAGAAGCAGAGGCAAGAGGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAAGCAGGACATCAGTATTTGAGAAGCAGAGGCAAGAGGATT  50

seq1  CTGAGTTCCGGGTTTGGCTCTGTTGCAAACCCCAACCCCACCCCCACCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTCCGGGTTTGGCTCTGTTGCAAACCCCAACCCCACCCCCACCCC  100

seq1  CAACCACCACCACCTGTCTTGGTTACTTTTCTCGTTGACATGCTCAGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACCACCACCTGTCTTGGTTACTTTTCTCGTTGACATGCTCAGATA  150

seq1  ACCGACAAGAGGCTCCCTAAGGAAGGGAGGGCTTTTGCCATTTGTGTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGACAAGAGGCTCCCTAAGGAAGGGAGGGCTTTTGCCATTTGTGTTTG  200

seq1  TTTATCTTTGCTTATAGTTCTAGTGGCTGCAATCCGTCAGGACAGAGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTTTGCTTATAGTTCTAGTGGCTGCAATCCGTCAGGACAGAGAAG  250

seq1  GTCTGGTGACAGAGAGCAGAGGGAGGCTAGTTATATTGTGTCCACGGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGTGACAGAGAGCAGAGGGAGGCTAGTTATATTGTGTCCACGGTCA  300

seq1  GGAAGCAAAAAGAGACGAAGGCCACTGATGAAGTGTTCAGCTTGCTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAAAAAGAGACGAAGGCCACTGATGAAGTGTTCAGCTTGCTTTGT  350

seq1  CCCCTTTTTAAAAACCTACTTTATTTATTACTTTATTTATTCATTGTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTTTAAAAACCTACTTTATTTATTACTTTATTTATTCATTGTTTG  400

seq1  TGTACATGTATGCTCATAACAACTTGCAGGACTCAGTACTCACCTACCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATGTATGCTCATAACAACTTGCAGGACTCAGTACTCACCTACCAA  450

seq1  CATGTACGCTCCAGGGATCGAACTCAGGTCACCCAGCTTAGCAGCAAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACGCTCCAGGGATCGAACTCAGGTCACCCAGCTTAGCAGCAAGCA  500

seq1  CCTTTGCCTGCTAGCCATTCCTCGGGCCCTGCTTTTGTTTTTCTAGTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCCTGCTAGCCATTCCTCGGGCCCTGCTTTTGTTTTTCTAGTGAG  550

seq1  ACCAGGACTCCAGCCCTCAGAATGGCTCCTTCCACATTCAAGGTGGGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGACTCCAGCCCTCAGAATGGCTCCTTCCACATTCAAGGTGGGTCT  600

seq1  TGTCACGTGAAGTAACCTAATCTAACTCCCCTCACTGCGGATACCCGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACGTGAAGTAACCTAATCTAACTCCCCTCACTGCGGATACCCGGAA  650

seq1  GCTTGTTTCCTACGTGATTCTAGACCTTATCAAGTTGACAATCATTACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTTCCTACGTGATTCTAGACCTTATCAAGTTGACAATCATTACTA  700

seq1  ACCAGCACACTATTTCAG-AAAACTAAAACC-GGGGCTAAGTATGTAGCA  748
      |||||||||||||||||| |||||||||||| ||||||||||||||||||
seq2  ACCAGCACACTATTTCAGAAAAACTAAAACCGGGGGCTAAGTATGTAGCA  750

seq1  CAGTTTGTAGAACACTTGTCTTGCATGACTGATGGTCCCCAGCACCACAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGTAGAACACTTGTCTTGCATGACTGATGGTCCCCAGCACCACAT  800

seq1  AAAA-CAACGAGTGGTGCATAC-TTGTAATACTAATATTTGGGATCATGA  846
      |||| ||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAAACCAACGAGTGGTGCATACTTTGTAATACTAATATTTGGGATCATGA  850

seq1  GTTCAAAGCCAGCCTCAACTAGATAATGAGTTCAAGTCCAGCCTGGGAT-  895
      ||||||||||||||||| ||||||||||||||||||||||||||||||| 
seq2  GTTCAAAGCCAGCCTCACCTAGATAATGAGTTCAAGTCCAGCCTGGGATG  900

seq1  GCACGAGATGCTGTCTCAAGCAAACACACAAACAAAAAACAA-TAATATA  944
      |||||||||||||| ||| |||||||||||||||| |||||| || ||||
seq2  GCACGAGATGCTGTTTCAGGCAAACACACAAACAATAAACAATTATTATA  950

seq1  AA-TAATCAGAAGT--AAACTG-TGAATCAT-GGACAATAG-AACAAAGC  988
      || |||||||||||  || ||| |||||||| ||||||||| ||||||||
seq2  AATTAATCAGAAGTTAAACCTGTTGAATCATGGGACAATAGAAACAAAGC  1000

seq1  --TTTGGCTCTT-GTG-ACACCC-TTGGATTCAAAACCACTTT--GC-TG  1030
        || ||||||| ||| |||||| |||||||||||||||||||  || ||
seq2  CTTTGGGCTCTTGGTGAACACCCTTTGGATTCAAAACCACTTTTGGCTTG  1050

seq1  CAAGTGTGAAGTAT-TCA-TTTCTTTCAAGCCACTGGAAGCAGAGGAA--  1076
      |||||||||||||| ||| ||||||||| ||||||||||||||| |||  
seq2  CAAGTGTGAAGTATATCATTTTCTTTCAGGCCACTGGAAGCAGAAGAAAC  1100

seq1  GGGGAAA-TGAAGCAAGAATCTTGTATTGAC-AGAGCT  1112
      ||| ||| |||||||  | |||||||||||| ||||||
seq2  GGGAAAATTGAAGCAGAATTCTTGTATTGACGAGAGCT  1138