BAC Information

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BAC

Clone NameB6Ng01-232O01
Chromosome1 (Build37)
Map Location 88,223,001 - 88,223,546
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110, Sp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538
Downstream geneNcl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232O01.bB6Ng01-232O01.g
ACCGA045102GA045103
length864541
definitionB6Ng01-232O01.b B6Ng01-232O01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctggggactcttcagaggatatataaatgctggaagccagagagg
tgccaaagctgctggtgcttttgctggttgctggttgctggttgctggtt
gctggttgctggttgctggttgctggttgctggttgctggttgctggttg
ctggttgctggttgctgcttgctggttgctggttgctggttgctggttgc
tggttgctggttgctgcttgctgcttgctgcttgctgcttgctgcttgct
ggttgctggttgctggttgctgcttgctgcttgctgcttgctgcttgctg
cttgctgcttgctgcttgctgcttgctgcttgctgcttgctgcttgctgc
ttgctgcttgctgcttgctgcttgctgcttgctgcttgctgcttgctgct
tgctgcttgctgcttgctgcttgctgcttgctgcttgctgcttgctgctt
gctgcttgctgcttgctgcttgctgcttgctgcttgctgcttgctgcttg
ctgcttgctgcttgctgcttgctgcttgctgcttgctgcttgctgcttgc
tgcttgctgcttgctgcttgctgcttgctgcttgctgcttgctgcttgct
gcttgctgcttgctgcttgctgcttgctgcttgctgcttgctgcttgctg
cttgctgcttgctgcttgctgcttgctgcttgctgcttgctgcttgctgc
ttgctgcttttgagatatcctgacaatgaggatcaccctgccccaggaac
tcgacatcctaatctgtaggagtatctagcagtatcataatcctctttct
tctctaaccttcgttctctcccacctagtgtggggggttgaaatggtaag
ggtggaggcggtgg
acaggttttgtttctccaaggtaggcttcgcatttgcacactctggtcgc
ttgtatttaccgttatctcacttgtgagacccataaataccatttccaat
tcagtattctgtgtggatatcacttggctggtcctgttgaacggctgtaa
agtctcctctgaagtgaatttatgtcttcatcaaaaaaatcatttgatgg
gcagctgaaatggctcagctgataaaggcacttaccacccagcctgatca
cctgagttcaaatccctggaatccacgtatgtgttaagagagaactgact
cccccaagttattcacaggtctccacacatatcccgtggcatgtacacac
acacacacacacacacacacacacacacacacacacaggacggggggaga
gagtcaagatagatagatagatagatagatagatagatagatagatagat
agatagatagatagataaacttgaaatgtttataaggcagaggcaggtgg
attttctgagttctaggccagcctggtctacatagtgagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_88223001_88223546
seq2: B6Ng01-232O01.g_68_614

seq1  GAATTCACAGGTTTTGTTTCTCCAAGGTAGGCTTCGCATTTGCACACTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGGTTTTGTTTCTCCAAGGTAGGCTTCGCATTTGCACACTCT  50

seq1  GGTCGCTTGTATTTACCGTTATCTCACTTGTGAGACCCATAAATACCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGCTTGTATTTACCGTTATCTCACTTGTGAGACCCATAAATACCATT  100

seq1  TCCAATTCAGTATTCTGTGTGGATATCACTTGGCTGGTCCTGTTGAACGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTCAGTATTCTGTGTGGATATCACTTGGCTGGTCCTGTTGAACGG  150

seq1  CTGTAAAGTCTCCTCTGAAGTGAATTTATGTCTTCATCAAAAAAATCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAAGTCTCCTCTGAAGTGAATTTATGTCTTCATCAAAAAAATCATT  200

seq1  TGATGGGCAGCTGAAATGGCTCAGCTGATAAAGGCACTTACCACCCAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGCAGCTGAAATGGCTCAGCTGATAAAGGCACTTACCACCCAGCC  250

seq1  TGATCACCTGAGTTCAAATCCCTGGAATCCACGTATGTGTTAAGAGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCACCTGAGTTCAAATCCCTGGAATCCACGTATGTGTTAAGAGAGAA  300

seq1  CTGACTCCCCCAAGTTATTCACAGGTCTCCACACATATCCCGTGGCATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCCCCCAAGTTATTCACAGGTCTCCACACATATCCCGTGGCATGT  350

seq1  ACACACACACACACACACACACACACACACACACACACACACAGGACGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACACACAGGACGGG  400

seq1  GGGAGAGAGTCAAGATAGATAGATAGATAGATAGATAGATAGATAGATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGAGTCAAGATAGATAGATAGATAGATAGATAGATAGATAGATAG  450

seq1  ATAGATAGATAGATAGATAGATAAACTTGAAATGTTTATAAGGCAGAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAGATAGATAGATAGATAAACTTGAAATGTTTATAAGGCAGAGGC  500

seq1  AGGTGGA-TTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTT  546
      ||||||| ||||||||||| |||||||||||||||||| ||||||||
seq2  AGGTGGATTTTCTGAGTTCTAGGCCAGCCTGGTCTACATAGTGAGTT  547