BAC Information

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BAC

Clone NameB6Ng01-233E21
Chromosome1 (Build37)
Map Location 71,165,670 - 71,340,875
singlet/doubletdoublet
Overlap geneLOC667900, Abca12
Upstream geneSpag16, A830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809, Bard1
Downstream geneLOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233E21.bB6Ng01-233E21.g
ACCGA045406GA045407
length1,1571,095
definitionB6Ng01-233E21.b B6Ng01-233E21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,165,670 - 71,166,839)(71,339,772 - 71,340,875)
sequence
gaattcagtgagccacctctgtaatcagacacgggggtggggtgcctgcg
gctggctaactacagtgatggagaggatgtgtacagttttgtaagactga
agtcctcaacctgacgattgaagcactacctccaggtagactatctctga
attgaattgaatcggcacactatgacagttggctactacagaattgactg
atcggctgctggaactgcttctatatactaagagtgcctggaaacagaga
acgcatctgcgtttattactgggtgatagaaatgaagacaccccttcctc
cgttacaatgcctttgtcatgctattttatcatagcaacagaagtaacta
agacactgtgttgggtacaagataagcaaaggtgaatgagtgacccaacc
aaagttctcacagaatttacaacgtgtggtttcctttcactagctctaac
acaaggaaaacacttcccttcctacagtgttgctataaagaacaaacgag
aataccttatttctctattgtcagaagtaacggtgcttatctcgttgata
tatgctaatgttagaaatgaatggcacccatatagacctcttagaacagt
ctcatggaaactgcaccatctttttcccaaaatgaagtatatcttcttat
ctggatgcatttctccattgttctctaagtttacaactgtaatcttagaa
cggaaccactatatcccataaagtataatacatatgagtattccagtgca
gaatctagatgtatccattactactgattcattattattcaagtaataag
actaatgaacagaatctactaatatggcagcctttctctttactcagaaa
attactgcagacagtcagacatttctaaagtataaccatgtgtccattca
agcagaaggaaaagaaaaaaaacaaacaaagataaattcagaccactaaa
ggtttacatattatttagcagataatgtgtcttttgccttgatagatgta
ggtattttaaatcgattcatgctatggacagaaagctagtgaatcgctgc
agcttgttagaatgcgccgtgaagccttcaacctatgttaagcatgaatc
aggactctggtctttgtcagcacaaaattcctagtccagtttaggaagca
attgaat
gaattctcttctgctttttcctacctcagaagtactaaattgagaactaa
gatgactgaatttaatcttcagaaagcagatcgtttcctgtcatattaag
gcttttctgttcatggacatagatcttgatgaataacctttattcaacac
tgactgctctaggtttaaacaaaacttaaatttataattggtagtgatta
tcaatattcaaccaataaatattttagtatattctcatttaagactgtat
cacctgaaataaatttcagaacactttcaggtcctgatatcatttaattt
gaatcttcacactctattactctgtaatttcctaccttataaatttctga
gcaacatttaataagcttaggcatatattttggattgttaaaaggcatgc
tccaagtatttcctctttctctctctctctttctgtctctgtctctgccc
tcctctctctctgtctctctgtctctctctcattgtagtatttttagcaa
gggacttaagtattttaaaatagacttagagagtgagctctgtctttcct
atatgtctaacgggttgagcattttgaggccttccaggtgagatgtgctg
gaacaatcaccactgttcattttcttctcagagcctgctgtccccgacag
cattcagctatgcaagccaatatattgcacggtatgaagaacaaggcgtt
ggtacgttcaatttctttaaaatagggttttatctctaagtgtgatgtgt
gccaaggaagagtaaacacctgtgttcaatttctaggtcttcagtgggaa
aatatgtacaaatcccctgttcaggatgacaccacctcatttggctggct
gtgctgtctaatcctagcagactccttcatttatttctttattgctttgt
acgtcaggaatgttttcccaggtaggaacctgcacacatgcttcttgtgt
tgtcattgctgtaagtcagctaatacacatgcactagtagtggctggcca
gactatctgtggatgtataataataataaataacctgatacaaattgttc
aggtaaatttgtcgctgtgttcttcttgttctcactgtcttaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_71165670_71166839
seq2: B6Ng01-233E21.b_45_1201

seq1  GAATTCAGTGAGCCACCTCTGTAATCAGACACGGGGGTGGGGTGCCTGCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGAGCCACCTCTGTAATCAGACACGGGGGTGGGGTGCCTGCG  50

seq1  GCTGGCTAACTACAGTGATGGAGAGGATGTGTACAGTTTTGTAAGACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTAACTACAGTGATGGAGAGGATGTGTACAGTTTTGTAAGACTGA  100

seq1  AGTCCTCAACCTGACGATTGAAGCACTACCTCCAGGTAGACTATCTCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCAACCTGACGATTGAAGCACTACCTCCAGGTAGACTATCTCTGA  150

seq1  ATTGAATTGAATCGGCACACTATGACAGTTGGCTACTACAGAATTGACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATTGAATCGGCACACTATGACAGTTGGCTACTACAGAATTGACTG  200

seq1  ATCGGCTGCTGGAACTGCTTCTATATACTAAGAGTGCCTGGAAACAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGCTGCTGGAACTGCTTCTATATACTAAGAGTGCCTGGAAACAGAGA  250

seq1  ACGCATCTGCGTTTATTACTGGGTGATAGAAATGAAGACACCCCTTCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCATCTGCGTTTATTACTGGGTGATAGAAATGAAGACACCCCTTCCTC  300

seq1  CGTTACAATGCCTTTGTCATGCTATTTTATCATAGCAACAGAAGTAACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTACAATGCCTTTGTCATGCTATTTTATCATAGCAACAGAAGTAACTA  350

seq1  AGACACTGTGTTGGGTACAAGATAAGCAAAGGTGAATGAGTGACCCAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTGTGTTGGGTACAAGATAAGCAAAGGTGAATGAGTGACCCAACC  400

seq1  AAAGTTCTCACAGAATTTACAACGTGTGGTTTCCTTTCACTAGCTCTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCTCACAGAATTTACAACGTGTGGTTTCCTTTCACTAGCTCTAAC  450

seq1  ACAAGGAAAACACTTCCCTTCCTACAGTGTTGCTATAAAGAACAAACGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGAAAACACTTCCCTTCCTACAGTGTTGCTATAAAGAACAAACGAG  500

seq1  AATACCTTATTTCTCTATTGTCAGAAGTAACGGTGCTTATCTCGTTGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTTATTTCTCTATTGTCAGAAGTAACGGTGCTTATCTCGTTGATA  550

seq1  TATGCTAATGTTAGAAATGAATGGCACCCATATAGACCTCTTAGAACAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTAATGTTAGAAATGAATGGCACCCATATAGACCTCTTAGAACAGT  600

seq1  CTCATGGAAACTGCACCATCTTTTTCCCAAAATGAAGTATATCTTCTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGAAACTGCACCATCTTTTTCCCAAAATGAAGTATATCTTCTTAT  650

seq1  CTGGATGCATTTCTCCATTGTTCTCTAAGTTTACAACTGTAATCTTAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGCATTTCTCCATTGTTCTCTAAGTTTACAACTGTAATCTTAGAA  700

seq1  CGGAACCACTATATCCCATAAAGTATAATACATATGAGTATTCCAGTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAACCACTATATCCCATAAAGTATAATACATATGAGTATTCCAGTGCA  750

seq1  GAATCTAGATGTATCCATTACTACTGATTCATTATTATTCAAGTAATAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTAGATGTATCCATTACTACTGATTCATTATTATTCAAGTAATAAG  800

seq1  ACTAATGAACAGAATCTACTAATATGGCAGGCCTTTCTCTTTACTCAGAA  850
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACTAATGAACAGAATCTACTAATATGGCA-GCCTTTCTCTTTACTCAGAA  849

seq1  AATTACTGCAGACAGTCAGACATTTCTAAAGTATAAACCATGTGTCCATT  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AATTACTGCAGACAGTCAGACATTTCTAAAGTAT-AACCATGTGTCCATT  898

seq1  CAAGCAAGAAGGAAAAGAAAAAAAACAAACAAAGATAAATTCAGACCACT  950
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGC-AGAAGGAAAAGAAAAAAAACAAACAAAGATAAATTCAGACCACT  947

seq1  AAAGGTTTACATATTATTTAAGCAAGAATAATGTGTCTTTTGCCTTGATA  1000
      ||||||||||||||||||| ||||   |||||||||||||||||||||||
seq2  AAAGGTTTACATATTATTT-AGCA--GATAATGTGTCTTTTGCCTTGATA  994

seq1  GATTGTAGGTATTTTTAAATCGATTCATGCTAT-GACAGAAAGCTAGTGA  1049
      || |||||||| ||||||||||||||||||||| ||||||||||||||||
seq2  GA-TGTAGGTA-TTTTAAATCGATTCATGCTATGGACAGAAAGCTAGTGA  1042

seq1  ATCGGCTGCAGGCTTGTTAGGATGCGCCGTGGAGCTTTCAACCTATG-TA  1098
      ||| |||||| ||||||||| |||||||||| ||| ||||||||||| ||
seq2  ATC-GCTGCA-GCTTGTTAGAATGCGCCGTGAAGCCTTCAACCTATGTTA  1090

seq1  AGCATGAATCAAGAACTCTGGGTCTTGTCAAGGCAACAAAAATCCTAGTC  1148
      |||||||||| || |||||||   ||||||  || |||||| ||||||||
seq2  AGCATGAATC-AGGACTCTGGTCTTTGTCA--GC-ACAAAATTCCTAGTC  1136

seq1  CAGTTAAGAAAGCAATATGAAT  1170
      ||||| || ||||||| |||||
seq2  CAGTTTAGGAAGCAAT-TGAAT  1157

seq1: chr1_71339772_71340875
seq2: B6Ng01-233E21.g_64_1158 (reverse)

seq1  TTTTAAAAGGACAGTGAG-ACAAGA--GACACAGCGACAAATTTAACCTG  47
      ||||||   ||||||||| ||||||   |||||||||||||||| |||||
seq2  TTTTAA---GACAGTGAGAACAAGAAGAACACAGCGACAAATTT-ACCTG  46

seq1  AACAATTTGGTTAATTCAGGTTATTTA-TATTATTATACCATTCCACAGA  96
      |||||||||  ||  |||||||||||| |||||||||||   ||||||||
seq2  AACAATTTG--TA--TCAGGTTATTTATTATTATTATAC--ATCCACAGA  90

seq1  TTAGTCTGGCCAGCCAACTACTAGTGCATGTGTATTAGCTGACTTACAGC  146
       |||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  -TAGTCTGGCCAGCC-ACTACTAGTGCATGTGTATTAGCTGACTTACAGC  138

seq1  AATGACAACCACAAGAAGCATGTGTGCAGGTTCCTACCTGGGAAAACATT  196
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AATGACAA-CACAAGAAGCATGTGTGCAGGTTCCTACCTGGGAAAACATT  187

seq1  CCTGACGTACCAAGCAATAAAGAAATAAATGAAGGAGTCTGCTAGGATTA  246
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCTGACGTACAAAGCAATAAAGAAATAAATGAAGGAGTCTGCTAGGATTA  237

seq1  GACAGCACAGCCAGCCAAATGAGGTGGTGTCATCCTGAACAGGGGATTTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCACAGCCAGCCAAATGAGGTGGTGTCATCCTGAACAGGGGATTTG  287

seq1  TACATATTTTCCCACTGAAGACCTAGAAATTGAACACAGGTGTTTACTCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATTTTCCCACTGAAGACCTAGAAATTGAACACAGGTGTTTACTCT  337

seq1  TCCTTGGCACACATCACACTTAGAGATAAAACCCTATTTTAAAGAAATTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGCACACATCACACTTAGAGATAAAACCCTATTTTAAAGAAATTG  387

seq1  AACGTACCAACGCCTTGTTCTTCATACCGTGCAATATATTGGCTTGCATA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTACCAACGCCTTGTTCTTCATACCGTGCAATATATTGGCTTGCATA  437

seq1  GCTGAATGCTGTCGGGGACAGCAGGCTCTGAGAAGAAAATGAACAGTGGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATGCTGTCGGGGACAGCAGGCTCTGAGAAGAAAATGAACAGTGGT  487

seq1  GATTGTTCCAGCACATCTCACCTGGAAGGCCTCAAAATGCTCAACCCGTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTTCCAGCACATCTCACCTGGAAGGCCTCAAAATGCTCAACCCGTT  537

seq1  AGACATATAGGAAAGACAGAGCTCACTCTCTAAGTCTATTTTAAAATACT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATATAGGAAAGACAGAGCTCACTCTCTAAGTCTATTTTAAAATACT  587

seq1  TAAGTCCCTTGCTAAAAATACTACAATGAGAGAGAGACAGAGAGACAGAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCCCTTGCTAAAAATACTACAATGAGAGAGAGACAGAGAGACAGAG  637

seq1  AGAGAGGAGGGCAGAGACAGAGACAGAAAGAGAGAGAGAGAAAGAGGAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGAGGGCAGAGACAGAGACAGAAAGAGAGAGAGAGAAAGAGGAAA  687

seq1  TACTTGGAGCATGCCTTTTAACAATCCAAAATATATGCCTAAGCTTATTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGGAGCATGCCTTTTAACAATCCAAAATATATGCCTAAGCTTATTA  737

seq1  AATGTTGCTCAGAAATTTATAAGGTAGGAAATTACAGAGTAATAGAGTGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGCTCAGAAATTTATAAGGTAGGAAATTACAGAGTAATAGAGTGT  787

seq1  GAAGATTCAAATTAAATGATATCAGGACCTGAAAGTGTTCTGAAATTTAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTCAAATTAAATGATATCAGGACCTGAAAGTGTTCTGAAATTTAT  837

seq1  TTCAGGTGATACAGTCTTAAATGAGAATATACTAAAATATTTATTGGTTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTGATACAGTCTTAAATGAGAATATACTAAAATATTTATTGGTTG  887

seq1  AATATTGATAATCACTACCAATTATAAATTTAAGTTTTGTTTAAACCTAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGATAATCACTACCAATTATAAATTTAAGTTTTGTTTAAACCTAG  937

seq1  AGCAGTCAGTGTTGAATAAAGGTTATTCATCAAGATCTATGTCCATGAAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCAGTGTTGAATAAAGGTTATTCATCAAGATCTATGTCCATGAAC  987

seq1  AGAAAAGCCTTAATATGACAGGAAACGATCTGCTTTCTGAAGATTAAATT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGCCTTAATATGACAGGAAACGATCTGCTTTCTGAAGATTAAATT  1037

seq1  CAGTCATCTTAGTTCTCAATTTAGTACTTCTGAGGTAGGAAAAAGCAGAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATCTTAGTTCTCAATTTAGTACTTCTGAGGTAGGAAAAAGCAGAA  1087

seq1  GAGAATTC  1104
      ||||||||
seq2  GAGAATTC  1095