BAC Information

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BAC

Clone NameB6Ng01-234E05
Chromosome1 (Build37)
Map Location 56,916,020 - 57,041,195
singlet/doubletdoublet
Overlap geneSatb2, EG329160, 9130024F11Rik, LOC100042869
Upstream gene9130227L01Rik, Hsfy2
Downstream geneLOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik, LOC667339, 2810022L02Rik, Kctd18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234E05.bB6Ng01-234E05.g
ACCGA046075GA046076
length1,1661,066
definitionB6Ng01-234E05.b B6Ng01-234E05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,916,020 - 56,917,186)(57,040,138 - 57,041,195)
sequence
gaattcaggcttcctgagctcaaaactggactggaattagacaccgatca
atcactctccctagggcagactgtctcacctgtaaaatcaaagtaattct
acttccctcacagcactaatacgaatacagagatgaactcagggttcact
aaatggcagctatggtgtaatgcctagcatagcttttaaatataaaataa
gaatctgtaaaatgtgaaaatgagtacaacatgttggaatatagttactt
taaatttaaagctttgaatattcaaagtatgtcagttataccttgctgat
tttcttatcatacataaggcaaaaacataaacaataacctttaggaagtg
agataattaaaattatttaggctagaggaaaatataaagaagggtaatac
tcatataaaatggaatgactatgtgtgtttttcagtaagctgaaattaaa
atagtaattattgttggatacattggcacaagcctgcaattccagaactt
gggaggttaaaaacaggaggatgaagagttcgaggccacggacagaggcc
tggaatgttcatgggcagcttgagctatataagacactgcttcaaaaata
gcaatcaccaagatataaactgtatacttcaaagaggtaagtaaatttct
ttccctatgtaacatataaaataattaaaaataagccttcatctgtatca
tcatttcaaatgggtcatagttattagtagatcataaagctaattttata
gatcaaacccaatgtttataatgaattggaattatagaaattggagaaca
ccaaattgctttaattatagtatgaatatagttttataagggcttttttt
ctctttgatgaagattttgctatagcagtacatagaactagacacaagca
aatgtctaccaaccctgacttacaaagtactccaggtgggcatggtggta
agagaagttcagaagagatgccatggtccatagtgatcatttcgggcaca
gaaattacagacagattgaaattgcttggaaaagccccaatgatttcaat
gaatacagttgtatttacatcacagcaatttctgactaaccttaattcac
tttaatttggacatgcatattaacctagccaaggtcctcatttcagctaa
tggcccataaaaagaa

gaattcaggttagtgcagggcgcgctctgctgggtcaaagcagtcatcaa
ttccgtcaaagggcgctctgactaagggtgaatagggagcggactactaa
attagtcaaataagcgaagtataacccagtccacgaggcatttcctgggg
tgtgggttggtagctgccacacacctttcaaaatggggagcggtgatggg
aaatgaaggagtaaaggtttgatcctcctcttggcggcttgtactccggg
gctccctgcaggggccaggcagcttcttcgtcctgcacaaggcttctcga
ttctcacctgttcactccggaccctgcagagggacccaagaccccataat
gctctccacagaggcaaggcccagccagaggatctaaaggtggggttggg
gttcaaactagggatttggctccaaagaagggagtgagaaagcaggtaca
gattgtgtctctggttgatatctgggaatgttaatacttcactgcggtaa
agtagccatcagtgtaggttactcatgggtcaagggcgccaccgaaaact
gtgaagaccaaattgagccacccacactttattaccggaagaggctaagc
ccaaaggagaagactcggtgcccttccaaacctcacttcaggtttcccca
ggcaagcgagcggtggagtgcaagccaggtttaaaggactctagagaaga
gagtagccagcctactctgacttttcagaaaacgctccggcagtttagat
tacagagacagacttcgtaaactcccagcactcccttttcaggtcagggc
tgcaggaccctccccccacccccaacacacctttctcctaagttaaccct
ccttcccgaaattttatcagaataaaatctgaataagataataggtatga
gaagggaccaaccttggttgtctgtaggctgaaccgaaataacagcataa
gggaaagggcttttgagacgtttttccccacaagttgctgaaagtgcccg
gctcctaagaagctcagcttgttggcagaataaagactacaagcctgagc
ctcccggactggtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_56916020_56917186
seq2: B6Ng01-234E05.b_48_1213

seq1  GAATTCAGGCTTCCTGAGCTCAAAACTGGACTGGAATTAGACACCGATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCTTCCTGAGCTCAAAACTGGACTGGAATTAGACACCGATCA  50

seq1  ATCACTCTCCCTAGGGCAGACTGTCTCACCTGTAAAATCAAAGTAATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTCTCCCTAGGGCAGACTGTCTCACCTGTAAAATCAAAGTAATTCT  100

seq1  ACTTCCCTCACAGCACTAATACGAATACAGAGATGAACTCAGGGTTCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCTCACAGCACTAATACGAATACAGAGATGAACTCAGGGTTCACT  150

seq1  AAATGGCAGCTATGGTGTAATGCCTAGCATAGCTTTTAAATATAAAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCAGCTATGGTGTAATGCCTAGCATAGCTTTTAAATATAAAATAA  200

seq1  GAATCTGTAAAATGTGAAAATGAGTACAACATGTTGGAATATAGTTACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGTAAAATGTGAAAATGAGTACAACATGTTGGAATATAGTTACTT  250

seq1  TAAATTTAAAGCTTTGAATATTCAAAGTATGTCAGTTATACCTTGCTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTAAAGCTTTGAATATTCAAAGTATGTCAGTTATACCTTGCTGAT  300

seq1  TTTCTTATCATACATAAGGCAAAAACATAAACAATAACCTTTAGGAAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATCATACATAAGGCAAAAACATAAACAATAACCTTTAGGAAGTG  350

seq1  AGATAATTAAAATTATTTAGGCTAGAGGAAAATATAAAGAAGGGTAATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATTAAAATTATTTAGGCTAGAGGAAAATATAAAGAAGGGTAATAC  400

seq1  TCATATAAAATGGAATGACTATGTGTGTTTTTCAGTAAGCTGAAATTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATAAAATGGAATGACTATGTGTGTTTTTCAGTAAGCTGAAATTAAA  450

seq1  ATAGTAATTATTGTTGGATACATTGGCACAAGCCTGCAATTCCAGAACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAATTATTGTTGGATACATTGGCACAAGCCTGCAATTCCAGAACTT  500

seq1  GGGAGGTTAAAAACAGGAGGATGAAGAGTTCGAGGCCACGGACAGAGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTTAAAAACAGGAGGATGAAGAGTTCGAGGCCACGGACAGAGGCC  550

seq1  TGGAATGTTCATGGGCAGCTTGAGCTATATAAGACACTGCTTCAAAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGTTCATGGGCAGCTTGAGCTATATAAGACACTGCTTCAAAAATA  600

seq1  GCAATCACCAAGATATAAACTGTATACTTCAAAGAGGTAAGTAAATTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCACCAAGATATAAACTGTATACTTCAAAGAGGTAAGTAAATTTCT  650

seq1  TTCCCTATGTAACATATAAAATAATTAAAAATAAGCCTTCATCTGTATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTATGTAACATATAAAATAATTAAAAATAAGCCTTCATCTGTATCA  700

seq1  TCATTTCAAATGGGTCATAGTTATTAGTAGATCATAAAGCTAATTTTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCAAATGGGTCATAGTTATTAGTAGATCATAAAGCTAATTTTATA  750

seq1  GATCAAACCCAATGTTTATAATGAATTGGAATTATAGAAATTGGAGAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAACCCAATGTTTATAATGAATTGGAATTATAGAAATTGGAGAACA  800

seq1  CCAAATTGCTTTAATTATAGTATGAATATAGTTTTATAAGGGCTTTTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTGCTTTAATTATAGTATGAATATAGTTTTATAAGGGCTTTTTTT  850

seq1  CTCTTTGATGAAGATTTTGCTATAGCAGTACATAGAACTAGACACAAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGATGAAGATTTTGCTATAGCAGTACATAGAACTAGACACAAGCA  900

seq1  AATGTCTACCAACCCTGACTTACAAAGTACTCCAGGTGGGCATGGTGGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTACCAACCCTGACTTACAAAGTACTCCAGGTGGGCATGGTGGTA  950

seq1  AGAGAAGTTCAGAAGGAGATGCCATGGTCCATAGTGATCATTTCGGGCAC  1000
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGAGAAGTTCAGAA-GAGATGCCATGGTCCATAGTGATCATTTCGGGCAC  999

seq1  AGAAATTACAGACAGATTGAAATTGCTTGGAAAAGCCCAAATGATTTCAA  1050
      |||||||||||||||||||||||||||||||||||||| ||||||||| |
seq2  AGAAATTACAGACAGATTGAAATTGCTTGGAAAAGCCCCAATGATTTC-A  1048

seq1  ATGAATACAGTTGTATTTACATCACAGC-ATTTCTGGACTAAACCTTAAT  1099
      |||||||||||||||||||||||||||| |||||| |||| |||||||||
seq2  ATGAATACAGTTGTATTTACATCACAGCAATTTCT-GACT-AACCTTAAT  1096

seq1  TCACTTT-ATTTGACCATGCATATAACCCTAGCCAAGGTCCTCATTTCAG  1148
      ||||||| |||||  ||||||||| | |||||||||||||||||||||||
seq2  TCACTTTAATTTGGACATGCATATTAACCTAGCCAAGGTCCTCATTTCAG  1146

seq1  CTAATGG-CCATAAAAAGAA  1167
      ||||||| ||||||||||||
seq2  CTAATGGCCCATAAAAAGAA  1166


seq1: chr1_57040138_57041195
seq2: B6Ng01-234E05.g_66_1131 (reverse)

seq1  CACACACAGTCCGGGAGCTCCAGGCTTGTAGTCTTT-TTCTGCCAACAAG  49
      ||||| |||||||||||   |||||||||||||||| |||||||||||||
seq2  CACAC-CAGTCCGGGAGGCTCAGGCTTGTAGTCTTTATTCTGCCAACAAG  49

seq1  CTGAGCTCCTTA-GAGCCCGGCAC-TTCAGCAACTTGTGGGGAAAAACGT  97
      ||||||| |||| ||||| ||||| |||||||||||||||||||||||||
seq2  CTGAGCTTCTTAGGAGCCGGGCACTTTCAGCAACTTGTGGGGAAAAACGT  99

seq1  CTCAAAAGCCCTT--CCCTATGCTGTTATTTCGGTTCAG-CTACAGACAA  144
      |||||||||||||  || ||||||||||||||||||||| ||||||||||
seq2  CTCAAAAGCCCTTTCCCTTATGCTGTTATTTCGGTTCAGCCTACAGACAA  149

seq1  CCAA-GTTGGTCCCTTCTCATACCTATTATCTTATTCAGATTTTATTCTG  193
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGTTGGTCCCTTCTCATACCTATTATCTTATTCAGATTTTATTCTG  199

seq1  ATAAAATTTCGGGAAGGA-GGTTAACTTA-GAGAAAGGTGTGTTGGGGGT  241
      |||||||||||||||||| |||||||||| ||||||||||||||||||||
seq2  ATAAAATTTCGGGAAGGAGGGTTAACTTAGGAGAAAGGTGTGTTGGGGGT  249

seq1  GGGGGGAGGGTCCTGCAGCCCTGACCTGAAAAGGGAGTGCTGGGAGTTTA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGAGGGTCCTGCAGCCCTGACCTGAAAAGGGAGTGCTGGGAGTTTA  299

seq1  CGAAGTCTGTCTCTGTAATCTAAACTGCCGGAGCGTTTTCTGAAAAGTCA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGTCTGTCTCTGTAATCTAAACTGCCGGAGCGTTTTCTGAAAAGTCA  349

seq1  GAGTAGGCTGGCTACTCTCTTCTCTAGAGTCCTTTAAACCTGGCTTGCAC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGGCTGGCTACTCTCTTCTCTAGAGTCCTTTAAACCTGGCTTGCAC  399

seq1  TCCACCGCTCGCTTGCCTGGGGAAACCTGAAGTGAGGTTTGGAAGGGCAC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCGCTCGCTTGCCTGGGGAAACCTGAAGTGAGGTTTGGAAGGGCAC  449

seq1  CGAGTCTTCTCCTTTGGGCTTAGCCTCTTCCGGTAATAAAGTGTGGGTGG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTCTTCTCCTTTGGGCTTAGCCTCTTCCGGTAATAAAGTGTGGGTGG  499

seq1  CTCAATTTGGTCTTCACAGTTTTCGGTGGCGCCCTTGACCCATGAGTAAC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTTGGTCTTCACAGTTTTCGGTGGCGCCCTTGACCCATGAGTAAC  549

seq1  CTACACTGATGGCTACTTTACCGCAGTGAAGTATTAACATTCCCAGATAT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACTGATGGCTACTTTACCGCAGTGAAGTATTAACATTCCCAGATAT  599

seq1  CAACCAGAGACACAATCTGTACCTGCTTTCTCACTCCCTTCTTTGGAGCC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGAGACACAATCTGTACCTGCTTTCTCACTCCCTTCTTTGGAGCC  649

seq1  AAATCCCTAGTTTGAACCCCAACCCCACCTTTAGATCCTCTGGCTGGGCC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCTAGTTTGAACCCCAACCCCACCTTTAGATCCTCTGGCTGGGCC  699

seq1  TTGCCTCTGTGGAGAGCATTATGGGGTCTTGGGTCCCTCTGCAGGGTCCG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTCTGTGGAGAGCATTATGGGGTCTTGGGTCCCTCTGCAGGGTCCG  749

seq1  GAGTGAACAGGTGAGAATCGAGAAGCCTTGTGCAGGACGAAGAAGCTGCC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAACAGGTGAGAATCGAGAAGCCTTGTGCAGGACGAAGAAGCTGCC  799

seq1  TGGCCCCTGCAGGGAGCCCCGGAGTACAAGCCGCCAAGAGGAGGATCAAA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCCTGCAGGGAGCCCCGGAGTACAAGCCGCCAAGAGGAGGATCAAA  849

seq1  CCTTTACTCCTTCATTTCCCATCACCGCTCCCCATTTTGAAAGGTGTGTG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACTCCTTCATTTCCCATCACCGCTCCCCATTTTGAAAGGTGTGTG  899

seq1  GCAGCTACCAACCCACACCCCAGGAAATGCCTCGTGGACTGGGTTATACT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTACCAACCCACACCCCAGGAAATGCCTCGTGGACTGGGTTATACT  949

seq1  TCGCTTATTTGACTAATTTAGTAGTCCGCTCCCTATTCACCCTTAGTCAG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTTATTTGACTAATTTAGTAGTCCGCTCCCTATTCACCCTTAGTCAG  999

seq1  AGCGCCCTTTGACGGAATTGATGACTGCTTTGACCCAGCAGAGCGCGCCC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCCCTTTGACGGAATTGATGACTGCTTTGACCCAGCAGAGCGCGCCC  1049

seq1  TGCACTAACCTGAATTC  1058
      |||||||||||||||||
seq2  TGCACTAACCTGAATTC  1066


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