BAC Information

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BAC

Clone NameB6Ng01-234F24
Chromosome1 (Build37)
Map Location 79,345,867 - 79,475,925
singlet/doubletdoublet
Overlap geneScg2
Upstream geneSgpp2, Farsb, Mogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260, EG545332
Downstream geneAp1s3, Wdfy1, Mrpl44, Serpine2, EG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik, Cul3, EG620899, 1700016L21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234F24.bB6Ng01-234F24.g
ACCGA046159GA046160
length1,181814
definitionB6Ng01-234F24.b B6Ng01-234F24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,345,867 - 79,347,049)(79,475,121 - 79,475,925)
sequence
gaattcccatgtgcatgtgaaggtacttatgaaggccagaggaaggtgat
ttaatctctggagctggagttacagatggttgtgagccacccaatgtgag
tgctgggacatgaaatccgatctgttgcaagaacaacaggtgctcttaac
cactgagccatctctctactcccaccccatccccacacacatagctttaa
aaatctattatgagttctatctgctgaaaatctcataagccaacagctct
cctagttgtcctgacatcgattgaaaggtgatacaagataataagacatc
atctttgatcctttatcagcctaccccactaagaccacaagaacaaacat
tgtccagcagtttccatggcaatgtgtcccataacagaatcaccgccttt
actggtctcctctcttccagcactatttgactcaagcagggtttctgcaa
tgttggcattatcagtagcactggccatctcatgctaaaggaggcaaaca
ctcagtgtctttgtgtttggagaaactcatgaatagcatatgctacagat
tactcaggggaattgggacatcatttcatatactccagaaatcaatgagg
ataaacaggaggatagctaagcctagccctcgggtgcttacagaggatag
agcatagccttggctcagtaacacaggctgtctaagctcagtctcctatc
tgaaggcaagctaaccaaatctgcagaattggggtcatcacagaccgggt
ctgtatttggataaggagtcattcttctgacactgactttggtggccttc
acacgtgtatcatgccttgtgccatgatgaatcatagtcctggggaaagg
caaagcttgatgaaatcttcatgttcaagtcatggaaatcagaaacattt
ccaaggaaagctatttgagctttcccttctggggctgagtgattagtcag
tacatggcagtagaagacacaaggtagatgatcaaaggccctaaatcaag
ggcttctttatgcctgattctgtttagtgagttatttttaataaaatgat
cagcagattccaggctataattaatcatatatagtaatataatattaaat
atatttcatggtatggatatagtaatataaatggtaagttcaataatatg
atggacaattatggacctagtgccaagttag
gaattcttgctggcgagatactagctcgggataagatccctctccccaaa
ctgttaaatacacaaaactaacatgaagagggaacaatattgatgaaaga
acatttgatagttttttttttgtttttttttttttttttttagatatacg
ctggttaaaaataagaataaactaaaagaaatagcttcctttgagtgtct
tccttttcaactccaatttggttcatttctcttgattcctcctttttcag
attaattctcatttattttaggtgtgtatcattagaacatctgggcctct
ttggtggcattttcactgacccttttctcagccatgggccaggagctaaa
aactcctggccctgcatggaaccttctgaactattttgtctgaccacttg
gaatgtgaatgccctaggatagaacacaacaacacacacacaaaaactga
aaactccccctaaaccaaacacagcacaacgggatcatggctctacaaac
tgtttcatatatgagaacccagaggaatttgagtttgaagttcctattgc
tcagcatgtgatgaactttccttggcacatattaaaatatagcattaata
gaagatttaaaggaagagctatgttactagggcgactgttgtgctggggt
atgtggagggatagggtacagggcaaacgaagcctacagagatgagtcac
atttaacagaagaccttcttttattaacatgtgttttttaaagggaggac
aatgatttgtccctctctgaagtttcattcatatcataaaccgaagagtt
ggcatcaagttgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_79345867_79347049
seq2: B6Ng01-234F24.b_44_1224

seq1  GAATTCCCATGTGCATGTGAAGGTACTTATGAAGGCCAGAGGAAGGTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATGTGCATGTGAAGGTACTTATGAAGGCCAGAGGAAGGTGAT  50

seq1  TTAATCTCTGGAGCTGGAGTTACAGATGGTTGTGAGCCACCCAATGTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTCTGGAGCTGGAGTTACAGATGGTTGTGAGCCACCCAATGTGAG  100

seq1  TGCTGGGACATGAAATCCGATCTGTTGCAAGAACAACAGGTGCTCTTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGACATGAAATCCGATCTGTTGCAAGAACAACAGGTGCTCTTAAC  150

seq1  CACTGAGCCATCTCTCTACTCCCACCCCATCCCCACACACATAGCTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGCCATCTCTCTACTCCCACCCCATCCCCACACACATAGCTTTAA  200

seq1  AAATCTATTATGAGTTCTATCTGCTGAAAATCTCATAAGCCAACAGCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTATTATGAGTTCTATCTGCTGAAAATCTCATAAGCCAACAGCTCT  250

seq1  CCTAGTTGTCCTGACATCGATTGAAAGGTGATACAAGATAATAAGACATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTTGTCCTGACATCGATTGAAAGGTGATACAAGATAATAAGACATC  300

seq1  ATCTTTGATCCTTTATCAGCCTACCCCACTAAGACCACAAGAACAAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGATCCTTTATCAGCCTACCCCACTAAGACCACAAGAACAAACAT  350

seq1  TGTCCAGCAGTTTCCATGGCAATGTGTCCCATAACAGAATCACCGCCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGCAGTTTCCATGGCAATGTGTCCCATAACAGAATCACCGCCTTT  400

seq1  ACTGGTCTCCTCTCTTCCAGCACTATTTGACTCAAGCAGGGTTTCTGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTCTCCTCTCTTCCAGCACTATTTGACTCAAGCAGGGTTTCTGCAA  450

seq1  TGTTGGCATTATCAGTAGCACTGGCCATCTCATGCTAAAGGAGGCAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCATTATCAGTAGCACTGGCCATCTCATGCTAAAGGAGGCAAACA  500

seq1  CTCAGTGTCTTTGTGTTTGGAGAAACTCATGAATAGCATATGCTACAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGTCTTTGTGTTTGGAGAAACTCATGAATAGCATATGCTACAGAT  550

seq1  TACTCAGGGGAATTGGGACATCATTTCATATACTCCAGAAATCAATGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAGGGGAATTGGGACATCATTTCATATACTCCAGAAATCAATGAGG  600

seq1  ATAAACAGGAGGATAGCTAAGCCTAGCCCTCGGGTGCTTACAGAGGATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAGGAGGATAGCTAAGCCTAGCCCTCGGGTGCTTACAGAGGATAG  650

seq1  AGCATAGCCTTGGCTCAGTAACACAGGCTGTCTAAGCTCAGTCTCCTATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGCCTTGGCTCAGTAACACAGGCTGTCTAAGCTCAGTCTCCTATC  700

seq1  TGAAGGCAAGCTAACCAAATCTGCAGAATTGGGGTCATCACAGACCGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCAAGCTAACCAAATCTGCAGAATTGGGGTCATCACAGACCGGGT  750

seq1  CTGTATTTGGATAAGGAGTCATTCTTCTGACACTGACTTTGGTGGCCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTTGGATAAGGAGTCATTCTTCTGACACTGACTTTGGTGGCCTTC  800

seq1  ACACGTGTATCATGCCTTGTGCCATGATGAATCATAGTCCTGGGGAAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTGTATCATGCCTTGTGCCATGATGAATCATAGTCCTGGGGAAAGG  850

seq1  CAAAGCTTGATGAAATCTTCATGTTCAAGTCATGG-AATCAGAAACATTT  899
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CAAAGCTTGATGAAATCTTCATGTTCAAGTCATGGAAATCAGAAACATTT  900

seq1  CCAAGGAAAGCTATTTGAGCTTTCCCTTCTGGGGCTGAGTGATTAGTCAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGAAAGCTATTTGAGCTTTCCCTTCTGGGGCTGAGTGATTAGTCAG  950

seq1  TACATGGCAGTAGAAGACACAAGGTAGATGATCAAAGGCCCTAAATCAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGCAGTAGAAGACACAAGGTAGATGATCAAAGGCCCTAAATCAAG  1000

seq1  GGCTTCTTTTATGCCTGATTCTGTTTAGTGAGTTA-TTTTAAT-AAATGA  1047
      |||||| |||||||||||||||||||||||||||| ||||||| ||||||
seq2  GGCTTC-TTTATGCCTGATTCTGTTTAGTGAGTTATTTTTAATAAAATGA  1049

seq1  TCAGCAGATTTCAGGCTATAAATTAAATCATATATAATTAATATAAATAT  1097
      |||||||||| ||||||||||  | |||||||||| | |||||| |||||
seq2  TCAGCAGATTCCAGGCTATAA--TTAATCATATAT-AGTAATAT-AATAT  1095

seq1  AAAATATAATTCAT-GTAT-GATATAATTAATATATAT-GTAATTTAATT  1144
       ||||||| ||||| |||| ||||| | ||||||| || |||| || | |
seq2  TAAATATATTTCATGGTATGGATAT-AGTAATATAAATGGTAAGTTCAAT  1144

seq1  TATATGTATTGACATATTATGACACTAGTGCCAAGTTAG  1183
       ||||| || |||| ||||||   |||||||||||||||
seq2  AATATG-ATGGACA-ATTATGGACCTAGTGCCAAGTTAG  1181

seq1: chr1_79475121_79475925
seq2: B6Ng01-234F24.g_67_880 (reverse)

seq1  TTCAACTTGATGCCAACTCTTCGGTTTATG-TATGGATGAAACTTCAGAG  49
      |||||||||||||||||||||||||||||| |||| ||||||||||||||
seq2  TTCAACTTGATGCCAACTCTTCGGTTTATGATATGAATGAAACTTCAGAG  50

seq1  A-GGAC-AATCATTGTCCTCC--TTTAAAAACACATGTT-ATAAA--GAG  92
      | |||| ||||||||||||||  || ||||||||||||| |||||   ||
seq2  AGGGACAAATCATTGTCCTCCCTTTAAAAAACACATGTTAATAAAAGAAG  100

seq1  GTCTTCTGTT-AATGTGACTCATCTCTGTAGGCTTCGTTTGCCCTGTACC  141
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTGTTAAATGTGACTCATCTCTGTAGGCTTCGTTTGCCCTGTACC  150

seq1  CTATCCCTCCACATACCCCAGCACAACAGTCGCCCTAGTAACATAGCTCT  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCCTCCACATACCCCAGCACAACAGTCGCCCTAGTAACATAGCTCT  200

seq1  TCCTTTAAATCTTCTATTAATGCTATATTTTAATATGTGCCAAGGAAAGT  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTAAATCTTCTATTAATGCTATATTTTAATATGTGCCAAGGAAAGT  250

seq1  TCATCACATGCTGAGCAATAGGAACTTCAAACTCAAATTCCTCTGGGTTC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACATGCTGAGCAATAGGAACTTCAAACTCAAATTCCTCTGGGTTC  300

seq1  TCATATATGAAACAGTTTGTAGAGCCATGATCCCGTTGTGCTGTGTTTGG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATATGAAACAGTTTGTAGAGCCATGATCCCGTTGTGCTGTGTTTGG  350

seq1  TTTAGGGGGAGTTTTCAGTTTTTGTGTGTGTGTTGTTGTGTTCTATCCTA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGGGGAGTTTTCAGTTTTTGTGTGTGTGTTGTTGTGTTCTATCCTA  400

seq1  GGGCATTCACATTCCAAGTGGTCAGACAAAATAGTTCAGAAGGTTCCATG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATTCACATTCCAAGTGGTCAGACAAAATAGTTCAGAAGGTTCCATG  450

seq1  CAGGGCCAGGAGTTTTTAGCTCCTGGCCCATGGCTGAGAAAAGGGTCAGT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCAGGAGTTTTTAGCTCCTGGCCCATGGCTGAGAAAAGGGTCAGT  500

seq1  GAAAATGCCACCAAAGAGGCCCAGATGTTCTAATGATACACACCTAAAAT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGCCACCAAAGAGGCCCAGATGTTCTAATGATACACACCTAAAAT  550

seq1  AAATGAGAATTAATCTGAAAAAGGAGGAATCAAGAGAAATGAACCAAATT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGAATTAATCTGAAAAAGGAGGAATCAAGAGAAATGAACCAAATT  600

seq1  GGAGTTGAAAAGGAAGACACTCAAAGGAAGCTATTTCTTTTAGTTTATTC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTGAAAAGGAAGACACTCAAAGGAAGCTATTTCTTTTAGTTTATTC  650

seq1  TTATTTTTAACCAGCGTATATCTAAAAAAAAAAAAAAAAAAACAAAAAAA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTAACCAGCGTATATCTAAAAAAAAAAAAAAAAAAACAAAAAAA  700

seq1  AAACTATCAAATGTTCTTTCATCAATATTGTTCCCTCTTCATGTTAGTTT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATCAAATGTTCTTTCATCAATATTGTTCCCTCTTCATGTTAGTTT  750

seq1  TGTGTATTTAACAGTTTGGGGAGAGGGATCTTATCCCGAGCTAGTATCTC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATTTAACAGTTTGGGGAGAGGGATCTTATCCCGAGCTAGTATCTC  800

seq1  GCCAGCAAGAATTC  805
      ||||||||||||||
seq2  GCCAGCAAGAATTC  814