BAC Information

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BAC

Clone NameB6Ng01-234G14
Chromosome1 (Build37)
Map Location 25,044,717 - 25,166,832
singlet/doubletdoublet
Overlap geneLOC669171, Bai3
Upstream gene4921533L14Rik, LOC665808, Col9a1, Col19a1, LOC100040475, LOC665829, Lmbrd1, 4930472D16Rik
Downstream geneLOC665595
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234G14.bB6Ng01-234G14.g
ACCGA046184GA046185
length1,1781,041
definitionB6Ng01-234G14.b B6Ng01-234G14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,165,655 - 25,166,832)(25,044,717 - 25,045,769)
sequence
gaattctaagtgacagatattatgatggctcattatcaaatttttgctac
ttgctgggagaaaaatatttggcagaaaaatctttgagacccatcaaaac
tttcagtgctttttaatcagactattaactgtcaaaaactcgatttaagt
gcaattaagtcaaatcataaaataaatacttctactaagtaagatatctg
taaatacatgttttctctctcataggaacaaaagcacggccatttcctct
gatactgttcagtggaaaattaaaactgagtaactatattacagataaat
tcactgtgaattgttatagcattctttctttcctaacactacaatgaaca
tatttcttgcagttttatctctttccttggtcattgaaccgtacaaatag
tctgtaaacttgctaaaatacatatatttttcaatgagtgatcttcagaa
atcttcagaattcctaagagaaattttgttattaaagggctgagaatttt
taaaacatttattacttaaagtatattatacatcacatggaatacatcat
agcacaattctttgaaagcaaatagtctttcaaatctacttgtgtattta
tagacattggcagggggttgggcttgtattgtgaccatgttgccctaaca
ccgaatatagtatatgagaaaagaaacactctcccagatcctctgttccc
cctgtcaatacattgccttaaaatacaccaatgtagacttcaaagtgtgt
atgaaatactgagttgtaatgtgtagcttttaaattctttctttacaatt
tgtcaccgataatccccaggagacctaggaatagagtttgtctttattgc
ttctcacctgtgtgcttctctgctatttttttcagaataatttcatataa
tttatatgggattttttctttcttgaaaatttgcaaccaatgttaaaaaa
taaatttttcccgtatagaccgggatacatacatattcttatttctgtct
attttttacacaccaacataatttggggtgtgtttgttgtctcttttgtt
ttgcttgttttgtttagtatgctctcttactcaatatgagtggaacaatc
tttgttagtttctttaacaaagaataccattctactttaaggagggaata
aaggacttaagttatgcatttagaacat

gaattcacaatatcttactttctatttggtctatgtatttcttataaata
cctggtgactactttcagttaagttctttacatgtgagagctgaaattgg
aagctgaacatcttattttttagtgaataaaatgtggggaactctggatt
ctcttcaccattttggacaatgtaatatttacagtgtttcagtatggaga
tattagagtaaataaaactaaatatacttaaaaccaaggtagcccatctt
aagtgatttaaaactggtttgtatatatctgagatttctccaccaaaatc
tctcctctttgaaacaactgtacttgccaaaagacctctcacagtggtta
gaaatgtagaaaaatattcaatatagcttttcttctataggaaatactcg
taggtaagctgtgagggataaggttgaatcaaatagaaaaaatgaagtgt
tgagatcagggcaatgtatggtttaggccatcacagacctccattattat
gcctaactgagcaggctacattgaaaataggagcagaaagagtaaggtgg
gtgctattatggaaaagaccttgtggagtgtgagatctattctcttcatt
ttgtgaaatgtttttttttttttcattctgagggccctgcagagttttta
aagtatttacaccatattcatcaccagagaaggctgatcctattcaagat
ttgagagtcttctaaagatccacttctgtgacaatttgtttccactaagg
aatggttatatattcgtgtctgggatgttaactgtcagtttctatgagtt
atagcaccaggctctttttttttttccttgcaaactgccaggtgatatcc
ttggagcttatgttctttctgaaaaagtacagtgcagtgtaacttagaaa
gcaaataaaatgcttccacaaacattaatgcttaattgccaaagtggcaa
gctctgccacttagatgcagaaagtatcatagtatttttttaatgtctat
atatagttgtctgctattctttgaaacactcaaaatcagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_25165655_25166832
seq2: B6Ng01-234G14.b_45_1222 (reverse)

seq1  ATGTTCTAAATGCCATAATTATGGTCTTTTATT-CCTCCTTAAAGTAGAA  49
      |||||||||||| ||||| |   ||| |||||| ||||||||||||||||
seq2  ATGTTCTAAATG-CATAACTTAAGTCCTTTATTCCCTCCTTAAAGTAGAA  49

seq1  -GGTTATCTTTG-TAAAG-AACT-ACAAAGA-TGTTCCAACTCAATATGA  94
       |||  |||||| ||||| |||| ||||||| |||||| |||||   |||
seq2  TGGTATTCTTTGTTAAAGAAACTAACAAAGATTGTTCC-ACTCATATTGA  98

seq1  GTAAGAAGAGCAATAACTAAAACAAAACAAAGCAAAACAAAAGAGACAAA  144
      ||||| ||||||   ||| ||||||||| |||||||||||||||||| ||
seq2  GTAAG-AGAGCA--TACT-AAACAAAAC-AAGCAAAACAAAAGAGAC-AA  142

seq1  CAAACAACAACCCCAAATTATGTTGGTGTGTAAAAAATAGACAGAAATAA  194
      ||||||   |||||||||||||||||||||||||||||||||||||||||
seq2  CAAACA--CACCCCAAATTATGTTGGTGTGTAAAAAATAGACAGAAATAA  190

seq1  GAATATGTATGTAT-CCGGTCTATACGG--AAAAATTATTTTTTAACATT  241
      |||||||||||||| |||||||||||||  |||| |||||||||||||||
seq2  GAATATGTATGTATCCCGGTCTATACGGGAAAAATTTATTTTTTAACATT  240

seq1  GGTTGCAAATTTTCAAGAAAGAAAAAAT-CCATATAAATTATATGAAATT  290
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGTTGCAAATTTTCAAGAAAGAAAAAATCCCATATAAATTATATGAAATT  290

seq1  ATTCTGAAAAAAATAGCAGAGAAGCACACAGGTGAGAAGCAATAAAGACA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAAAAAAATAGCAGAGAAGCACACAGGTGAGAAGCAATAAAGACA  340

seq1  AACTCTATTCCTAGGTCTCCTGGGGATTATCGGTGACAAATTGTAAAGAA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTATTCCTAGGTCTCCTGGGGATTATCGGTGACAAATTGTAAAGAA  390

seq1  AGAATTTAAAAGCTACACATTACAACTCAGTATTTCATACACACTTTGAA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTAAAAGCTACACATTACAACTCAGTATTTCATACACACTTTGAA  440

seq1  GTCTACATTGGTGTATTTTAAGGCAATGTATTGACAGGGGGAACAGAGGA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACATTGGTGTATTTTAAGGCAATGTATTGACAGGGGGAACAGAGGA  490

seq1  TCTGGGAGAGTGTTTCTTTTCTCATATACTATATTCGGTGTTAGGGCAAC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAGAGTGTTTCTTTTCTCATATACTATATTCGGTGTTAGGGCAAC  540

seq1  ATGGTCACAATACAAGCCCAACCCCCTGCCAATGTCTATAAATACACAAG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCACAATACAAGCCCAACCCCCTGCCAATGTCTATAAATACACAAG  590

seq1  TAGATTTGAAAGACTATTTGCTTTCAAAGAATTGTGCTATGATGTATTCC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTGAAAGACTATTTGCTTTCAAAGAATTGTGCTATGATGTATTCC  640

seq1  ATGTGATGTATAATATACTTTAAGTAATAAATGTTTTAAAAATTCTCAGC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATGTATAATATACTTTAAGTAATAAATGTTTTAAAAATTCTCAGC  690

seq1  CCTTTAATAACAAAATTTCTCTTAGGAATTCTGAAGATTTCTGAAGATCA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATAACAAAATTTCTCTTAGGAATTCTGAAGATTTCTGAAGATCA  740

seq1  CTCATTGAAAAATATATGTATTTTAGCAAGTTTACAGACTATTTGTACGG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGAAAAATATATGTATTTTAGCAAGTTTACAGACTATTTGTACGG  790

seq1  TTCAATGACCAAGGAAAGAGATAAAACTGCAAGAAATATGTTCATTGTAG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGACCAAGGAAAGAGATAAAACTGCAAGAAATATGTTCATTGTAG  840

seq1  TGTTAGGAAAGAAAGAATGCTATAACAATTCACAGTGAATTTATCTGTAA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGGAAAGAAAGAATGCTATAACAATTCACAGTGAATTTATCTGTAA  890

seq1  TATAGTTACTCAGTTTTAATTTTCCACTGAACAGTATCAGAGGAAATGGC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTACTCAGTTTTAATTTTCCACTGAACAGTATCAGAGGAAATGGC  940

seq1  CGTGCTTTTGTTCCTATGAGAGAGAAAACATGTATTTACAGATATCTTAC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCTTTTGTTCCTATGAGAGAGAAAACATGTATTTACAGATATCTTAC  990

seq1  TTAGTAGAAGTATTTATTTTATGATTTGACTTAATTGCACTTAAATCGAG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAGAAGTATTTATTTTATGATTTGACTTAATTGCACTTAAATCGAG  1040

seq1  TTTTTGACAGTTAATAGTCTGATTAAAAAGCACTGAAAGTTTTGATGGGT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGACAGTTAATAGTCTGATTAAAAAGCACTGAAAGTTTTGATGGGT  1090

seq1  CTCAAAGATTTTTCTGCCAAATATTTTTCTCCCAGCAAGTAGCAAAAATT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGATTTTTCTGCCAAATATTTTTCTCCCAGCAAGTAGCAAAAATT  1140

seq1  TGATAATGAGCCATCATAATATCTGTCACTTAGAATTC  1178
      ||||||||||||||||||||||||||||||||||||||
seq2  TGATAATGAGCCATCATAATATCTGTCACTTAGAATTC  1178


seq1: chr1_25044717_25045769
seq2: B6Ng01-234G14.g_61_1101

seq1  GAATTCACAATATCTTACTTTCTATTTGGTCTATGTATTTCTTATAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAATATCTTACTTTCTATTTGGTCTATGTATTTCTTATAAATA  50

seq1  CCTGGTGACTACTTTCAGTTAAGTTCTTTACATGTGAGAGCTGAAATTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGACTACTTTCAGTTAAGTTCTTTACATGTGAGAGCTGAAATTGG  100

seq1  AAGCTGAACATCTTATTTTTTAGTGAATAAAATGTGGGGAACTCTGGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGAACATCTTATTTTTTAGTGAATAAAATGTGGGGAACTCTGGATT  150

seq1  CTCTTCACCATTTTGGACAATGTAATATTTACAGTGTTTCAGTATGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCACCATTTTGGACAATGTAATATTTACAGTGTTTCAGTATGGAGA  200

seq1  TATTAGAGTAAATAAAACTAAATATACTTAAAACCAAGGTAGCCCATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGAGTAAATAAAACTAAATATACTTAAAACCAAGGTAGCCCATCTT  250

seq1  AAGTGATTTAAAACTGGTTTGTATATATCTGAGATTTCTCCACCAAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATTTAAAACTGGTTTGTATATATCTGAGATTTCTCCACCAAAATC  300

seq1  TCTCCTCTTTGAAACAACTGTACTTGCCAAAAGACCTCTCACAGTGGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCTTTGAAACAACTGTACTTGCCAAAAGACCTCTCACAGTGGTTA  350

seq1  GAAATGTAGAAAAATATTCAATATAGCTTTTCTTCTATAGGAAATACTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTAGAAAAATATTCAATATAGCTTTTCTTCTATAGGAAATACTCG  400

seq1  TAGGTAAGCTGTGAGGGATAAGGTTGAATCAAATAGAAAAAATGAAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAAGCTGTGAGGGATAAGGTTGAATCAAATAGAAAAAATGAAGTGT  450

seq1  TGAGATCAGGGCAATGTATGGTTTAGGCCATCACAGACCTCCATTATTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCAGGGCAATGTATGGTTTAGGCCATCACAGACCTCCATTATTAT  500

seq1  GCCTAACTGAGCAGGCTACATTGAAAATAGGAGCAGAAAGAGTAAGGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAACTGAGCAGGCTACATTGAAAATAGGAGCAGAAAGAGTAAGGTGG  550

seq1  GTGCTATTATGGAAAAGACCTTGTGGAGTGTGAGATCTATTCTCTTCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTATTATGGAAAAGACCTTGTGGAGTGTGAGATCTATTCTCTTCATT  600

seq1  TTGTGAAATGTTTTTTTTTTTTTCATTCTGAGGGCCCTGCAGAGTTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAAATGTTTTTTTTTTTTTCATTCTGAGGGCCCTGCAGAGTTTTTA  650

seq1  AAGTATTTACACCATATTCATCACCAGAGAAGGCTGATCCTATTCAAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTTACACCATATTCATCACCAGAGAAGGCTGATCCTATTCAAGAT  700

seq1  TTGAGAGTCTTCTAAAGATCCACTTCTGTGACAATTTGTTTCCACTAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGTCTTCTAAAGATCCACTTCTGTGACAATTTGTTTCCACTAAGG  750

seq1  AATGGTTATATATTCGTGTCTGGGATGTTAACTGTCAGTTTCTATGAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTATATATTCGTGTCTGGGATGTTAACTGTCAGTTTCTATGAGTT  800

seq1  ATAGCACCAGGCTC-TTTTTTTTTTCCTTGCAAACTGCCAGGTGATATCC  849
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATAGCACCAGGCTCTTTTTTTTTTTCCTTGCAAACTGCCAGGTGATATCC  850

seq1  TTGGAGCTTATGTTCTTTCTGAAAAAGTACAGTGCAGTGTAACTTAGAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGCTTATGTTCTTTCTGAAAAAGTACAGTGCAGTGTAACTTAGAAA  900

seq1  GCAAATAAAATGCTTCCACAAACATTAATGCTTAATTGCCAAAGTGGCAA  949
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCAAATAAAATGCTTCCACAAACATTAATGCTTAATTGCCAAAGTGGC-A  949

seq1  AGCTCTGCCACTTAGATTGCCAAGAAAGTATTCATAGTATTTTTTTTAAT  999
      |||||||||||||||| |||  |||||||| |||||||||||||||  | 
seq2  AGCTCTGCCACTTAGA-TGC--AGAAAGTA-TCATAGTATTTTTTT--AA  993

seq1  TGCCTATATATTAGTTGTCTGCTATTTCTTTGAAAACACTCCAAAAATTC  1049
      || ||||||| ||||||||||||| ||||||| ||||||||   ||| ||
seq2  TGTCTATATA-TAGTTGTCTGCTA-TTCTTTG-AAACACTC---AAAATC  1037

seq1  AGTG  1053
      ||||
seq2  AGTG  1041


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