BAC Information

Click to search

BAC

Clone NameB6Ng01-234J13
Chromosome1 (Build37)
Map Location 65,506,523 - 65,507,669
singlet/doubletsinglet
Overlap geneLOC100042716
Upstream geneCreb1, 2310038H17Rik, Ccnyl1, Fzd5, 9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2
Downstream geneEG628894, LOC100043165, LOC383520, EG667775, Crygf, LOC667781, EG667786, Mtap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234J13.bB6Ng01-234J13.g
ACCGA046317GA046318
length1,2051,152
definitionB6Ng01-234J13.b B6Ng01-234J13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctataccccatatttaatggggttatttgaatg
tctggaattcagcttcttgagctctttgtatatattggatattagattag
tcccctatcagatttaggattcgtagaaattctttcctaatctattggtg
tcctttttctcttattgacagcatcttttgccctacagaagctgtgcaat
tttatgaggtcccatttgtcaatttttgatcttacagcacaggccattgt
tgttctgtttaggaaattttcctgtgtccatatctttgaggctttccccc
actttctcctctataaatttcagtgtctcttattttatgtggagttcttg
gatcctcttagatttgagctttgtacacggaaataagaatggatcaattt
gtattcttctacatgataacctccagttgtagcatcaccatttgttgaaa
atgctgtcttttttccactggatggttttagctcccttgtaaagaccaag
tgaccataggtgtgcgagttcatttctgggtcttcaattctattccatta
atctacctgtttgtccctgtaccagtgtcatgcagtttttaccacaattg
ctctgtagtacagctttaggtcaggcatggtgattccaccagagggtctt
tgagaagagtttttgctatcctagattttttgttattccaaatgaatttt
caaattgccctttctaactctgtgaagaattgagtttgaattttgatggt
gattgcattgaatctgtagattgcttttggcaagatacccatttttacta
tattgatcctgcctatccatgagcatgggagatctttccatcttctgagg
tcttctttgatttctttcttcagagacttgaagttcttatcaaacagatc
tttcacttccttacttagagtcacaccaagctattttatattatttgtga
ctattttgaagggtggtgtttccctaatttctttctcagcctgtttatcc
tttgtgtagagaatgccattgacttgtttgagttaattttgtatccagat
acttcactgagctgtttatgaggtttagagtttccttgtgaaattttagg
tcagttatataatactatcatatcatctgcagagtgaatttgactctcgt
tacagttctattcagatattgttcttaaattgccttcctgtgcctaggga
accta
gaattctctgttcagctttgtactccatttttattgggttgtttcttgat
atctagttttttgagttgtttatataccttggatattagccctctattga
atgtagacttggttaaaaaccatctttttccattctgtaggctactgatt
tatctgaatgatggtatgctttgctgtatctaaagttttcaatattggta
ctaactgtgttcaggactataagattctgtccacaagctgacagaagggc
tctgaagataacacctacacaactcactgaacatggacgtgttgagctgg
tgcctgtacagagtcttctcctgtgtattgcagtgtgtttggtataagaa
gaaaatgttctctgtatgttttcaaattagaaatataaagagcaagcctc
ctcctttcccttcttccttgagtgtgtgttcttttatttggttataagtt
atcttttcttccctttttggttggcttaaaaaatttgttcgtttatgttt
tattgtttttgagaaagaacttaaagttgagcaggtagagagggggatct
agaaggatttggagaaggggaaggatatgatcaagtatatttaactttaa
aaatagtttaaataataaaaatataagaaaatcccccctccacacacata
attaattgatcttacagtttccatgaataaggaagctacaaaaggctgta
ttcaaagttttggctggatataccttcctacctgaaagccatcccttctt
ccatggttatggggtagactgtatttttttttccagtgtattttgcacct
atagaagtcataaaaagtttgtttctcttaaaaatattataattaattga
caagaacagctatgtatatttctatgaagtatatgatatttttatgttta
cattatagaaaagattccaccccagctaattaatatatttatcactttga
ctatttttattggttcttctcagtatcataatacaccacagccttgattt
taatagtgagaattatttttattgaattttattctaaaagtttaaaatct
cacaccattaccttcactaaattttctaatcgacttcacttgtccatggc
cagttatgcattggttaatgcgtatatattagttaattggttccaaattg
ca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_65506523_65507669
seq2: B6Ng01-234J13.g_63_1214

seq1  GAATTCTCTGTTCAGCTTTGTACTCCATTTTTATTGGGTTGTTTCTTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTTCAGCTTTGTACTCCATTTTTATTGGGTTGTTTCTTGAT  50

seq1  ATCTAGTTTTTTGAGTTGTTTATATACCTTGGATATTAGCCCTCTATTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGTTTTTTGAGTTGTTTATATACCTTGGATATTAGCCCTCTATTGA  100

seq1  ATGTAGACTTGGTTAAAAACCATCTTTTTCCATTCTGTAGGCTACTGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGACTTGGTTAAAAACCATCTTTTTCCATTCTGTAGGCTACTGATT  150

seq1  TATCTGAATGATGGTATGCTTTGCTGTATCTAAAGTTTTCAATATTGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGAATGATGGTATGCTTTGCTGTATCTAAAGTTTTCAATATTGGTA  200

seq1  CTAACTGTGTTCAGGACTATAAGATTCTGTCCACAAGCTGACAGAAGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGTGTTCAGGACTATAAGATTCTGTCCACAAGCTGACAGAAGGGC  250

seq1  TCTGAAGATAACACCTACACAACTCACTGAACATGGACGTGTTGAGCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGATAACACCTACACAACTCACTGAACATGGACGTGTTGAGCTGG  300

seq1  TGCCTGTACAGAGTCTTCTCCTGTGTATTGCAGTGTGTTTGGTATAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTACAGAGTCTTCTCCTGTGTATTGCAGTGTGTTTGGTATAAGAA  350

seq1  GAAAATGTTCTCTGTATGTTTTCAAATTAGAAATATAAAGAGCAAGCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTTCTCTGTATGTTTTCAAATTAGAAATATAAAGAGCAAGCCTC  400

seq1  CTCCTTTCCCTTCTTCCTTGAGTGTGTGTTCTTTTATTTGGTTATAAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTCCCTTCTTCCTTGAGTGTGTGTTCTTTTATTTGGTTATAAGTT  450

seq1  ATCTTTTCTTCCCTTTTTGGTTGGCTTAAAAAATTTGTTCGTTTATGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTCTTCCCTTTTTGGTTGGCTTAAAAAATTTGTTCGTTTATGTTT  500

seq1  TATTGTTTTTGAGAAAGAACTTAAAGTTGAGCAGGTAGAGAGGGGGATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTTTTGAGAAAGAACTTAAAGTTGAGCAGGTAGAGAGGGGGATCT  550

seq1  AGAAGGATTTGGAGAAGGGGAAGGATATGATCAAGTATATTTAACTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGATTTGGAGAAGGGGAAGGATATGATCAAGTATATTTAACTTTAA  600

seq1  AAATAGTTTAAATAATAAAAATATAAGAAAATCCCCCCTCCACACACATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTTTAAATAATAAAAATATAAGAAAATCCCCCCTCCACACACATA  650

seq1  ATTAATTGATCTTACAGTTTCCATGAATAAGGAAGCTACAAAAGGCTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTGATCTTACAGTTTCCATGAATAAGGAAGCTACAAAAGGCTGTA  700

seq1  TTCAAAGTTTTGGCTGGATATACCTTCCTACCTGAAAGCCATCCCTTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGTTTTGGCTGGATATACCTTCCTACCTGAAAGCCATCCCTTCTT  750

seq1  CCATGGTTATGGGGTAGACTGTA-TTTTTTTTCCAGTGTATTTTGCACCT  799
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCATGGTTATGGGGTAGACTGTATTTTTTTTTCCAGTGTATTTTGCACCT  800

seq1  ATAGAAGTCATAAAAAGTTTGTTTCTCTTAAAAATATTATAATTAATTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGTCATAAAAAGTTTGTTTCTCTTAAAAATATTATAATTAATTGA  850

seq1  CAAAGAACAGCTATGTATATTTCTATGAAGTATATGATATTTTTATGTTT  899
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-AAGAACAGCTATGTATATTTCTATGAAGTATATGATATTTTTATGTTT  899

seq1  ACATTATAG-AAAGATT-CACCCCAGCTAATTAATATATTTATCACTTTG  947
      ||||||||| ||||||| ||||||||||||||||||||||||||||||||
seq2  ACATTATAGAAAAGATTCCACCCCAGCTAATTAATATATTTATCACTTTG  949

seq1  ACTA-TTTTATT-GTTCTTCTCAGTATCAT-ATACA-CACAG-CTTGATT  992
      |||| ||||||| ||||||||||||||||| ||||| ||||| |||||||
seq2  ACTATTTTTATTGGTTCTTCTCAGTATCATAATACACCACAGCCTTGATT  999

seq1  TT-ATAGTGAAGAAATTATTTTTATTTGAAATTTTATCTAAAAAGTTAAA  1041
      || |||||||   |||||||||||||   ||||||||   ||||||| ||
seq2  TTAATAGTGA--GAATTATTTTTATT--GAATTTTATTCTAAAAGTTTAA  1045

seq1  AATCTCACA-CATTAC--TCACTAAA-TTTCTATTCAAACTCACCTGTTC  1087
      ||||||||| ||||||  |||||||| |||||| || |  |||| ||| |
seq2  AATCTCACACCATTACCTTCACTAAATTTTCTAATCGACTTCACTTGTCC  1095

seq1  AT-GCCAGTTATGGATTTGGTTTAATGCGTATAT-TATGTTAATTGGGTT  1135
      || |||||||||| |||  | ||||||||||||| |  ||||||| ||||
seq2  ATGGCCAGTTATGCATT--GGTTAATGCGTATATATTAGTTAATT-GGTT  1142

seq1  CCCAAAATTGCA  1147
      ||  ||||||||
seq2  CC--AAATTGCA  1152