BAC Information

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BAC

Clone NameB6Ng01-235G18
Chromosome1 (Build37)
Map Location 106,990,936 - 107,122,927
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383546, LOC100041134, Cdh20
Downstream geneRnf152, LOC100041985, Pign, LOC666249, 2310035C23Rik, LOC100042023, Tnfrsf11a, EG635504, Zcchc2, EG435634, Phlpp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235G18.bB6Ng01-235G18.g
ACCGA046902GA046903
length1,2121,066
definitionB6Ng01-235G18.b B6Ng01-235G18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,121,729 - 107,122,927)(106,990,936 - 106,992,000)
sequence
gaattcactcttgtgcctgcgtacaaggcttgtttactagttaggcacag
cggaggccagtgccatcttataatggcaattgctcgcggcacgcacggct
ctccacagcgattgctcgcggcacggctctccacacctggtaacatctaa
tcttttgacatcatgctatgatgttgtcttcgacaaagttcatactcaag
aactatgcaatcaagttccaaactagttgaaaataaaattgaaaaaaatt
agaattttcatgtttgaaatcagtttataatcttggttggacttggactg
tatttgtaggaatgcttggtcacatgtggcccaaacaagcttggaagtgt
tcctcatcatcttgatggaagataaacaaaattaaaggcactaataccat
gtgaggagtatgagaggggacataacaattggataactcttttgtagtcc
cacatcttgatcttctcaagtactggtggggcaagtttgcactccatggc
cagtcttatattacattttaaagcgctaatttacatgtcttatttaggca
tacaaacagtgcaaaaaattaaaattatagataaaaatccaggaaagtga
tccccaaattaaaataatatttatcaggtggagagggtgaagtgggggca
ggggcttgcaatgatctgtgggttctgttcttaaactgattaatgtgcca
ctatgctgttaattttttataccttatatgcatatggacatatgcacaca
cacattttgttatatataaacagttaaaaacataagcagtgagcaggcta
gataataagagggcccaagctgtgactataaagagactgtcctctattac
tgggtctagctattacggatatgtattttctttttacttacatcattttt
attctttcctgatctttttttttttttttttaaataagtctcatgaacat
gacctttagcacaaagcctatgttgtaatttattagatcagtttgggaac
ttgacccgaaatcagtagcagaaggacagccattgagaattccaatttga
ccacctatttgaacactaaaagaaacagctctccacatttaaagaaatga
agttcatggtctattctagagtcaattgatgactgtggacctgcctatct
agattatgtcttcttaattcaattctaccagaatagatttcatgaaattt
ttatactaacag

gaattctttccccttctgggtgtgggacgcccagcatggcagctcgctaa
tggctgcctagagatgcaatagctctgaagctgttaagtacagaatctcc
tccttttcctccaggggcttgggttccagagtacaggtgttcctagacca
tctatttaagcccacctgagcatctgagttgtcccaacagtgcttacaga
tatcttcatggttagaatccagaagacactgggaacattttctctgaaat
ggaccgagtgccacccagccagcaaagcagtgagtaggagttagtatgtg
ggccttggttggcacctctaccttcctctttgcacctcactcaagccagc
ttgatatgtcgcctttcctgacttgggaagggttatttaaagtctcccta
aaggtcaccaggcctgcatgacttctcacacttcctaaaaactgcacagc
ccaaatggtgcaaatttcaggctatagagctttgcattctttatgtgcca
ggagaggtagaattcacatcagcgtacagcaaacaaatggcacttgggaa
tcttccaggcttaaatgtattaatatatacacacgtgttatgttttctaa
tagcactgaagactgttgaaccaagattagttaaaagcaacacatacatc
atgctccttctcctttttacaaatgacacatcttcactttttgtttttgc
aatttttaaatggcaaaataccaagagctgatttatatactgaaaacaga
gtctcttgagtaaattaggaaatagaatttgaattcctgaacatatttat
ttttccctctagttaatactgcttgtattctaaatctgaatgcagatgct
aaaaagagaaaggagcccctcctgaggggcctttgtcacctgtaaatttc
catgacaagttgtgctttgcatcacgaaatttgctttcttctatagcaat
tgactttcatgaaagtgactttggagccaagttctttttgcctggttttc
agagtaatcctgcaagcactctgttgagcttgcagctagaattattcgcc
tgtaaaaactaaataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_107121729_107122927
seq2: B6Ng01-235G18.b_46_1257 (reverse)

seq1  CTGTTAGTATAAAAATTTCATGAAACTAATTCCTTGTTAGAATATTGAAT  50
      |||||||||||||||||||||||||   ||||  || ||||  |||||| 
seq2  CTGTTAGTATAAAAATTTCATGAAATCTATTC--TGGTAGA--ATTGAA-  45

seq1  TTAGGAAGACATAAATCTAGATTAGCAGGT-CACAGCCACTCAAATTTGA  99
      ||| |||||||| |||||||||  |||||| ||||| || ||||  ||||
seq2  TTAAGAAGACAT-AATCTAGATAGGCAGGTCCACAGTCA-TCAA--TTGA  91

seq1  CTCTAGAATAGACCATGACTTTCATTTCTTT-AATGT-GAGAGCTGTTTC  147
      ||||||||||||||||||  ||||||||||| ||||| ||||||||||||
seq2  CTCTAGAATAGACCATGAACTTCATTTCTTTAAATGTGGAGAGCTGTTTC  141

seq1  TTTTAGTGT--CAATAGGT-GTC-AATTGGAATTCTCA--TGCTGT-CTT  190
      |||||||||   ||||||| ||| ||||||||||||||   ||||| |||
seq2  TTTTAGTGTTCAAATAGGTGGTCAAATTGGAATTCTCAATGGCTGTCCTT  191

seq1  CTGCTACTGA-TTCCGGTCAAGTTCCC-AACTGATCT-ATAA--TTCCAC  235
      |||||||||| ||| |||||||||||| ||||||||| ||||  | | ||
seq2  CTGCTACTGATTTCGGGTCAAGTTCCCAAACTGATCTAATAAATTACAAC  241

seq1  AT-GGCTTTGTGCT-AAGGTCATGTTCATGAGACTTATTT--AAAAAAAA  281
      || ||||||||||| |||||||||||||||||||||||||  ||||||||
seq2  ATAGGCTTTGTGCTAAAGGTCATGTTCATGAGACTTATTTAAAAAAAAAA  291

seq1  AAAAAAAGATCAGG-AAGAAT-AAAATGATGTAAGTAAAAAGAAAATACA  329
      |||||||||||||| |||||| ||||||||||||||||||||||||||||
seq2  AAAAAAAGATCAGGAAAGAATAAAAATGATGTAAGTAAAAAGAAAATACA  341

seq1  TATCCGTAATAGCTAGACCCAGTAATAGAGGACAGTCTCTTTATAGTCAC  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCGTAATAGCTAGACCCAGTAATAGAGGACAGTCTCTTTATAGTCAC  391

seq1  AGCTT-GGCCCTCTTATTATCTAGCCTGCTCACTGCTTATGTTTTTAACT  428
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGGCCCTCTTATTATCTAGCCTGCTCACTGCTTATGTTTTTAACT  441

seq1  GTTTATATATAACAAAATGTGTGTGTGCATATGTCCATATGCATATAAGG  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATATATAACAAAATGTGTGTGTGCATATGTCCATATGCATATAAGG  491

seq1  TATAAAAAATTAACAGCATAGTGGCACATTAATCAGTTTAAGAACAGAAC  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAAATTAACAGCATAGTGGCACATTAATCAGTTTAAGAACAGAAC  541

seq1  CCACAGATCATTGCAAGCCCCTGCCCCCACTTCACCCTCTCCACCTGATA  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGATCATTGCAAGCCCCTGCCCCCACTTCACCCTCTCCACCTGATA  591

seq1  AATATTATTTTAATTTGGGGATCACTTTCCTGGATTTTTATCTATAATTT  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTATTTTAATTTGGGGATCACTTTCCTGGATTTTTATCTATAATTT  641

seq1  TAATTTTTTGCACTGTTTGTATGCCTAAATAAGACATGTAAATTAGCGCT  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTTGCACTGTTTGTATGCCTAAATAAGACATGTAAATTAGCGCT  691

seq1  TTAAAATGTAATATAAGACTGGCCATGGAGTGCAAACTTGCCCCACCAGT  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGTAATATAAGACTGGCCATGGAGTGCAAACTTGCCCCACCAGT  741

seq1  ACTTGAGAAGATCAAGATGTGGGACTACAAAAGAGTTATCCAATTGTTAT  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGAAGATCAAGATGTGGGACTACAAAAGAGTTATCCAATTGTTAT  791

seq1  GTCCCCTCTCATACTCCTCACATGGTATTAGTGCCTTTAATTTTGTTTAT  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCTCTCATACTCCTCACATGGTATTAGTGCCTTTAATTTTGTTTAT  841

seq1  CTTCCATCAAGATGATGAGGAACACTTCCAAGCTTGTTTGGGCCACATGT  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATCAAGATGATGAGGAACACTTCCAAGCTTGTTTGGGCCACATGT  891

seq1  GACCAAGCATTCCTACAAATACAGTCCAAGTCCAACCAAGATTATAAACT  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGCATTCCTACAAATACAGTCCAAGTCCAACCAAGATTATAAACT  941

seq1  GATTTCAAACATGAAAATTCTAATTTTTTTCAATTTTATTTTCAACTAGT  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAAACATGAAAATTCTAATTTTTTTCAATTTTATTTTCAACTAGT  991

seq1  TTGGAACTTGATTGCATAGTTCTTGAGTATGAACTTTGTCGAAGACAACA  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAACTTGATTGCATAGTTCTTGAGTATGAACTTTGTCGAAGACAACA  1041

seq1  TCATAGCATGATGTCAAAAGATTAGATGTTACCAGGTGTGGAGAGCCGTG  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGCATGATGTCAAAAGATTAGATGTTACCAGGTGTGGAGAGCCGTG  1091

seq1  CCGCGAGCAATCGCTGTGGAGAGCCGTGCGTGCCGCGAGCAATTGCCATT  1128
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCGAGCAATCGCTGTGGAGAGCCGTGCGTGCCGCGAGCAATTGCCATT  1141

seq1  ATAAGATGGCACTGGCCTCCGCTGTGCCTAACTAGTAAACAAGCCTTGTA  1178
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATGGCACTGGCCTCCGCTGTGCCTAACTAGTAAACAAGCCTTGTA  1191

seq1  CGCAGGCACAAGAGTGAATTC  1199
      |||||||||||||||||||||
seq2  CGCAGGCACAAGAGTGAATTC  1212


seq1: chr1_106990936_106992000
seq2: B6Ng01-235G18.g_68_1133

seq1  GAATTCTTTCCCCTTCTGGGTGTGGGACGCCCAGCATGGCAGCTCGCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCCCTTCTGGGTGTGGGACGCCCAGCATGGCAGCTCGCTAA  50

seq1  TGGCTGCCTAGAGATGCAATAGCTCTGAAGCTGTTAAGTACAGAATCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCCTAGAGATGCAATAGCTCTGAAGCTGTTAAGTACAGAATCTCC  100

seq1  TCCTTTTCCTCCAGGGGCTTGGGTTCCAGAGTACAGGTGTTCCTAGACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTCCTCCAGGGGCTTGGGTTCCAGAGTACAGGTGTTCCTAGACCA  150

seq1  TCTATTTAAGCCCACCTGAGCATCTGAGTTGTCCCAACAGTGCTTACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTAAGCCCACCTGAGCATCTGAGTTGTCCCAACAGTGCTTACAGA  200

seq1  TATCTTCATGGTTAGAATCCAGAAGACACTGGGAACATTTTCTCTGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCATGGTTAGAATCCAGAAGACACTGGGAACATTTTCTCTGAAAT  250

seq1  GGACCGAGTGCCACCCAGCCAGCAAAGCAGTGAGTAGGAGTTAGTATGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCGAGTGCCACCCAGCCAGCAAAGCAGTGAGTAGGAGTTAGTATGTG  300

seq1  GGCCTTGGTTGGCACCTCTACCTTCCTCTTTGCACCTCACTCAAGCCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGGTTGGCACCTCTACCTTCCTCTTTGCACCTCACTCAAGCCAGC  350

seq1  TTGATATGTCGCCTTTCCTGACTTGGGAAGGGTTATTTAAAGTCTCCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATGTCGCCTTTCCTGACTTGGGAAGGGTTATTTAAAGTCTCCCTA  400

seq1  AAGGTCACCAGGCCTGCATGACTTCTCACACTTCCTAAAAACTGCACAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCACCAGGCCTGCATGACTTCTCACACTTCCTAAAAACTGCACAGC  450

seq1  CCAAATGGTGCAAATTTCAGGCTATAGAGCTTTGCATTCTTTATGTGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGGTGCAAATTTCAGGCTATAGAGCTTTGCATTCTTTATGTGCCA  500

seq1  GGAGAGGTAGAATTCACATCAGCGTACAGCAAACAAATGGCACTTGGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGTAGAATTCACATCAGCGTACAGCAAACAAATGGCACTTGGGAA  550

seq1  TCTTCCAGGCTTAAATGTATTAATATATACACACGTGTTATGTTTTCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAGGCTTAAATGTATTAATATATACACACGTGTTATGTTTTCTAA  600

seq1  TAGCACTGAAGACTGTTGAACCAAGATTAGTTAAAAGCAACACATACATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACTGAAGACTGTTGAACCAAGATTAGTTAAAAGCAACACATACATC  650

seq1  ATGCTCCTTCTCCTTTTTACAAATGACACATCTTCACTTTTTGTTTTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCTTCTCCTTTTTACAAATGACACATCTTCACTTTTTGTTTTTGC  700

seq1  AATTTTTAAATGGCAAAATACCAAGAGCTGATTTATATACTGAAAACAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTAAATGGCAAAATACCAAGAGCTGATTTATATACTGAAAACAGA  750

seq1  GTCTCTTGAGTAAATTAGGAAATAGAATTTGAATTCCTGAACATATTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTGAGTAAATTAGGAAATAGAATTTGAATTCCTGAACATATTTAT  800

seq1  TTTTCCCTCTAGTTAATACTGCTTGTTATTCTAAATCTGAATGCAGATGC  850
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTTTCCCTCTAGTTAATACTGCTTG-TATTCTAAATCTGAATGCAGATGC  849

seq1  TAAAAAGAGAAAGGAGCCCCTCCTGAGGGGCCTTTGTCACCTGTAAATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGAGAAAGGAGCCCCTCCTGAGGGGCCTTTGTCACCTGTAAATTT  899

seq1  CCATGACAAGTTGTGCTTTGCATCACGAAATTTGC-TTCTTCTATAGCAA  949
      ||||||||||||||||||||||||||||||||||| |||||||||||| |
seq2  CCATGACAAGTTGTGCTTTGCATCACGAAATTTGCTTTCTTCTATAGC-A  948

seq1  ATTGACTTTCATGAAGGTGACTTTGGAGCCAAGTTCTTTT--GCTGGTTT  997
      ||||||||||||||| ||||||||||||||||||||||||   |||||||
seq2  ATTGACTTTCATGAAAGTGACTTTGGAGCCAAGTTCTTTTTGCCTGGTTT  998

seq1  CCAGAGGTAAATCCTGCCAGCCACTCTGTGGAGCTTGCAAGCTAGAAT--  1045
       |||||   |||||||| || |||||||| |||||||| |||||||||  
seq2  TCAGAG--TAATCCTGCAAG-CACTCTGTTGAGCTTGC-AGCTAGAATTA  1044

seq1  ATCGCCTGTAAAAA--AAATAA  1065
       |||||||||||||  ||||||
seq2  TTCGCCTGTAAAAACTAAATAA  1066


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