BAC Information

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BAC

Clone NameB6Ng01-236L06
Chromosome1 (Build37)
Map Location 155,576,113 - 155,727,716
singlet/doubletdoublet
Overlap geneRgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365
Upstream geneEG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2, Lamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8
Downstream geneTeddm1, LOC100043357, Glul, LOC100043359, Cacna1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236L06.bB6Ng01-236L06.g
ACCGA047858GA047859
length1,0651,109
definitionB6Ng01-236L06.b B6Ng01-236L06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,727,199 - 155,727,716)(155,576,113 - 155,577,203)
sequence
gaattctgggaaaggctcagagtgtatataaagcctagggccccaagagg
tggcattggtcattgctggtcgtttgggtggggttgtttgctgtttgata
gtagtcatggtcaaagaagaaataaaaagaaagaaactagattcatggct
ctctttctctgctcttgcacgcgttctcacgaccggccaggaagaacaca
acaaaccagaatcttctgcggcaaaactttattgcttacatctttaggag
caagcgtgcaagccccaagccccaaaaatgaaagccccctgcttacatct
ttaggagccagagcgccagagcgccagagcgccagagcgccagagcaaga
gctctattgtttacatctttaggagccagaagcaagagccagagccagag
agcaaaaaagcgcaagagcgcaagcaagagaggagaatggcggaaacccc
gtcccctttaaggagaattatcctccgcctaggacgtatcactccctgat
tggctgcagcccatggccgagttgtcgtcacgggaaaggcagagtacatg
tagtggaaaactacccttggcacatgcgcagattatttgtttaccactta
gaacacagctgtcagcgccatcttgtgacggcgaatgtgagggcggctcc
caacactctgctatcgttagggagttgaaggggtagaaaaagggtggaga
ggatggaagaaagagtaaccacaaagcacccaaagagcgttataacagac
ggcaagagtctatcctggctacttgaagagaaaggggtttatttaaaaca
gacttagttagcagtatcattgtgagggcctggataagggtttccagggt
tagacccaattgtctaagttagcaaccaacttactattgaaagggacttt
aagctgactcctctgctgaccccttggaccactacacactatggagaagc
caactagatgtgccatctttggccaattctgtgtattcagaacccaaagt
tccttgcagactgtttcctcatggttgccttacttctaggctgaagtctt
ggagtaggcttgtat
gaattccagaacccacccaaagctgtggcactcatgtctataagctcagt
gctcttacatagcaggtgggaggtggagacaggagattctctggaagctc
acaggccagctaacgagtagtctatgcagtgatgaaaaaagggatctgga
ctcaaacaaggtaagattagcatctaaggttgtcctttgacttgcacaag
tgcatgcgtgcgcacgaacacacacacacacacacacactaaatgagtga
atgaatgaatgaatgataagagtgggtagtttacagtatcctctatgccc
taccacccttcatactcagtggactgggaactcctgcagctgtgtgtctg
tccaacacagatttcatagcagcatgggtggtaataaggcagaccccgct
gggcctttgaatcagagcttggtggttcaaagaggagggatggtagagga
tccactttgtggacagaggtagctaccacatccagttttctagggccagc
caaggctggggggacacttggggagtgtctccactgcttggctgtggagg
aggcttaggtgtctagcccaaaggcctagtacctgctgtgcctcatcgaa
gtggttttgtggaggagtttcactgccttgctttgttcttatgttttctg
aaccacccagaaaattttgtgggctatccaaaactcatacatatttctct
ttgagttagaagaaagcctgtctttctttatccttagagactccatcagt
tccctcctcagaatgcctcatggggggggggtgctccctttcaacttcta
ccttctttacggcattaatcaactattagtgatatgtgatatttccttca
gtccctctcagtcccaacctcactgtgagaatgcaggtcagtctaagggt
atattctgtcagggcctgctagctgcttggcagagctgtgtgtgaccacc
cacgagagctgtatgccagcagctggctttggatccctgggcttctgtca
ccggaagatgtggggcctgtgtggtgtgtcagctcctcctatcagtaaag
caggttaagaagtatttcccgtgtccttttcagttgtgaaggaatcaaag
ggacacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_155727199_155727716
seq2: B6Ng01-236L06.b_578_1112 (reverse)

seq1  ATAC-AGCCTACT-CAAGACTTCAGCCTAGAAGTAA-GCAA-CATGAGGA  46
      |||| |||||||| |||||||||||||||||||||| |||| ||||||||
seq2  ATACAAGCCTACTCCAAGACTTCAGCCTAGAAGTAAGGCAACCATGAGGA  50

seq1  AACAGTCTGCATGGGACTTT-GGTTCTG-ATACACAGAATTGGCC-AAGA  93
      ||||||||||| || ||||| ||||||| |||||||||||||||| ||||
seq2  AACAGTCTGCAAGGAACTTTGGGTTCTGAATACACAGAATTGGCCAAAGA  100

seq1  TGGCCACATCTAGTTGGCTTCTCCATAGTGTGTAGTGGTCCATGGGGTCA  143
      ||| |||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGG-CACATCTAGTTGGCTTCTCCATAGTGTGTAGTGGTCCAAGGGGTCA  149

seq1  GCAGAGGAGTCAGCTT-AAGT-CCTTTCAATAGTAAGTTGGTTGCTA--C  189
      |||||||||||||||| |||| |||||||||||||||||||||||||   
seq2  GCAGAGGAGTCAGCTTAAAGTCCCTTTCAATAGTAAGTTGGTTGCTAACT  199

seq1  TAGACA--TTGGTCTAA-CCTGG-AACCCTTATCCA-GCCCTCACAATGA  234
      ||||||  | ||||||| ||||| |||||||||||| |||||||||||||
seq2  TAGACAATTGGGTCTAACCCTGGAAACCCTTATCCAGGCCCTCACAATGA  249

seq1  TACTGCTAACT-AGTCTGTTTT-AATAAACCCCTTTCTCTTCAAGTAGCC  282
      ||||||||||| |||||||||| |||||||||||||||||||||||||||
seq2  TACTGCTAACTAAGTCTGTTTTAAATAAACCCCTTTCTCTTCAAGTAGCC  299

seq1  AGGATAGACTCTTGCCGTCTGTTATAACGCTCTTTGGGTGCTTTGTGGTT  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAGACTCTTGCCGTCTGTTATAACGCTCTTTGGGTGCTTTGTGGTT  349

seq1  ACTCTTTCTTCCATCCTCTCCACCCTTTTTCTACCCCTTCAACTCCCTAA  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTCTTCCATCCTCTCCACCCTTTTTCTACCCCTTCAACTCCCTAA  399

seq1  CGATAGCAGAGTGTTGGGAGCCGCCCTCACATTCGCCGTCACAAGATGGC  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATAGCAGAGTGTTGGGAGCCGCCCTCACATTCGCCGTCACAAGATGGC  449

seq1  GCTGACAGCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCCAA  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACAGCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCCAA  499

seq1  GGGTAGTTTTCCACTACATGTACTCTGCCTTTCCCG  518
      ||||||||||||||||||||||||||||||||||||
seq2  GGGTAGTTTTCCACTACATGTACTCTGCCTTTCCCG  535

seq1: chr1_155576113_155577203
seq2: B6Ng01-236L06.g_65_1173

seq1  GAATTCCAGAACCCACCCAAAGCTGTGGCACTCATGTCTATAAGCTCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAACCCACCCAAAGCTGTGGCACTCATGTCTATAAGCTCAGT  50

seq1  GCTCTTACATAGCAGGTGGGAGGTGGAGACAGGAGATTCTCTGGAAGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTACATAGCAGGTGGGAGGTGGAGACAGGAGATTCTCTGGAAGCTC  100

seq1  ACAGGCCAGCTAACGAGTAGTCTATGCAGTGATGAAAAAAGGGATCTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCCAGCTAACGAGTAGTCTATGCAGTGATGAAAAAAGGGATCTGGA  150

seq1  CTCAAACAAGGTAAGATTAGCATCTAAGGTTGTCCTTTGACTTGCACAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACAAGGTAAGATTAGCATCTAAGGTTGTCCTTTGACTTGCACAAG  200

seq1  TGCATGCGTGCGCACGAACACACACACACACACACACACTAAATGAGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCGTGCGCACGAACACACACACACACACACACACTAAATGAGTGA  250

seq1  ATGAATGAATGAATGATAAGAGTGGGTAGTTTACAGTATCCTCTATGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGAATGAATGATAAGAGTGGGTAGTTTACAGTATCCTCTATGCCC  300

seq1  TACCACCCTTCATACTCAGTGGACTGGGAACTCCTGCAGCTGTGTGTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACCCTTCATACTCAGTGGACTGGGAACTCCTGCAGCTGTGTGTCTG  350

seq1  TCCAACACAGATTTCATAGCAGCATGGGTGGTAATAAGGCAGACCCCGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACACAGATTTCATAGCAGCATGGGTGGTAATAAGGCAGACCCCGCT  400

seq1  GGGCCTTTGAATCAGAGCTTGGTGGTTCAAAGAGGAGGGATGGTAGAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTTTGAATCAGAGCTTGGTGGTTCAAAGAGGAGGGATGGTAGAGGA  450

seq1  TCCACTTTGTGGACAGAGGTAGCTACCACATCCAGTTTTCTAGGGCCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTTGTGGACAGAGGTAGCTACCACATCCAGTTTTCTAGGGCCAGC  500

seq1  CAAGGCTGGGGGGACACTTGGGGAGTGTCTCCACTGCTTGGCTGTGGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTGGGGGGACACTTGGGGAGTGTCTCCACTGCTTGGCTGTGGAGG  550

seq1  AGGCTTAGGTGTCTAGCCCAAAGGCCTAGTACCTGCTGTGCCTCATCGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTAGGTGTCTAGCCCAAAGGCCTAGTACCTGCTGTGCCTCATCGAA  600

seq1  GTGGTTTTGTGGAGGAGTTTCACTGCCTTGCTTTGTTCTTATGTTTTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTTGTGGAGGAGTTTCACTGCCTTGCTTTGTTCTTATGTTTTCTG  650

seq1  AACCACCCAGAAAATTTTGTGGGCTATCCAAAACTCATACATATTTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCCAGAAAATTTTGTGGGCTATCCAAAACTCATACATATTTCTCT  700

seq1  TTGAGTTAGAAGAAAGCCTGTCTTTCTTTATCCTTAGAGACTCCATCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTAGAAGAAAGCCTGTCTTTCTTTATCCTTAGAGACTCCATCAGT  750

seq1  TCCCTCCTCAGAATGCCTCAT-GGGGGGGGGTGCTCCC-TTCAACTTCTA  798
      ||||||||||||||||||||| |||||||||||||||| |||||||||||
seq2  TCCCTCCTCAGAATGCCTCATGGGGGGGGGGTGCTCCCTTTCAACTTCTA  800

seq1  CCTTCTTTACGGCATTAATCAACTATTAGTGATATGTGATATTTCC-TCA  847
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCTTCTTTACGGCATTAATCAACTATTAGTGATATGTGATATTTCCTTCA  850

seq1  GTCCCTCTCAGTCCCAACCTCACTGTGAGAATGCAGGTCAGTCTAAGGGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTCTCAGTCCCAACCTCACTGTGAGAATGCAGGTCAGTCTAAGGGT  900

seq1  ATATTCTGTCAGGGCCTGCTAGCTGCTTGGCAGAGCTGTGTGTGA-CACC  946
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATATTCTGTCAGGGCCTGCTAGCTGCTTGGCAGAGCTGTGTGTGACCACC  950

seq1  CACGAGAGCTGTA-GCCAGCAGCTGGCTTTGGAT-CCTGG--CTCTGTCA  992
      ||||||||||||| |||||||||||||||||||| |||||   |||||||
seq2  CACGAGAGCTGTATGCCAGCAGCTGGCTTTGGATCCCTGGGCTTCTGTCA  1000

seq1  CGGGAAGATGTGGGG-CTGTGT-GTGTGTCAGCTCCT-CTATCAGTAAAG  1039
      | ||||||||||||| |||||| |||||||||||||| ||||||||||||
seq2  CCGGAAGATGTGGGGCCTGTGTGGTGTGTCAGCTCCTCCTATCAGTAAAG  1050

seq1  CAGGTTAAG-AGTATTTCC--TGTGCCTTTCAGTTGTGA--GGATCAAAG  1084
      ||||||||| |||||||||  ||| | ||||||||||||  | |||||||
seq2  CAGGTTAAGAAGTATTTCCCGTGTCCTTTTCAGTTGTGAAGGAATCAAAG  1100

seq1  G--CACAGA  1091
      |  ||||||
seq2  GGACACAGA  1109