BAC Information

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BAC

Clone NameB6Ng01-238D06
Chromosome1 (Build37)
Map Location 196,195,851 - 196,334,822
singlet/doubletdoublet
Overlap genenone
Upstream geneCamk1g, LOC667208
Downstream geneEG623172, Plxna2, Cd34, Cd46, Crry, Cr2, EG635956, LOC623380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238D06.bB6Ng01-238D06.g
ACCGA048960GA048961
length1,1071,119
definitionB6Ng01-238D06.b B6Ng01-238D06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(196,333,730 - 196,334,822)(196,195,851 - 196,196,793)
sequence
gaattccctggtgaatgatgtttggcatccagttcttgaaaatgcttcct
cctctttgttcctaatggacagaagcacaaacactctctaatcacatgaa
acataactctccttcccagcctgcaattatggcatggccctggagagatg
ctggttaaggactctgtcaacttgtccattaaaagagctaggacttggag
gggggaggtggcctgtgtttacattctttcatttttacttcttttctctg
taagagcatagatcacaaccatttccagtgggactgaaatttggtcatag
attgtcagcaggggagtaaattattgccaaccaactttacaatacttaaa
aataaaagaaatactgctttgatttggaggggaaccacattgtccctata
actctgactacattcagtgtttatgctggtctggagtctgggtgcctgct
tgctatcaaattgtcatgaaggacaggggtatttagtctcctgcttagag
gtatcaggaaaacagtcccctagttttgtgcctacctaaaaaaactattt
tgctcccagcccctttcttcagtgcaccccagcttctttcatgggttacc
aacatcttcaacatagggaccataccaaatttttcagtccctaaagcccc
caattaagagaaaaaagaccatctatatgccaagggttattatacaaagc
atttccatctgtcttttctattggaattgcttctgttccagatccaaaga
gagtatttaattttaagaaaagggaattgtagggaaagagtggtatcatt
gtggtcactcgggcttatatgcaattcagtcatggaggtgaacctccagg
gaggtggaggtgagactaaagaacctctttatgaaggagcaagtgtatat
ctctcttgttatgtgagacctgacttgcttcccttcctaaggacttcaag
gttactcttggttcactgagtgatgtataaaaccctgggtcctggtggac
atccaagaaccaacttaagcatgtctttggcagctttttataccttggct
tcccctggatggttcaccccctaacctacctatctcttgccttttctggg
accaacc

gaattccacataaaaccagagacactgaaacttatagaggagaaagtagg
gaaaagcctcgaagatatgggtacaggggataaattcctgaatagaacag
caatggcttgtgctgtaagatcgagaattgacaaatgggacctcataaaa
ttgcaaagcttctgcaaggcaaaagacaccgtcagcttgctttcttatag
aacccaagactaccagcccaggaatggcaccagccacaatgggccctctc
ttgatcactaattgagaaaatgctttacagctggatctcatggaggcatt
tcctcaagggaggcttctttctctgtaataactccaacctgtgtcaagtt
gacacacaaaaccagccagtgcaattgaccccttgtaaacttgacacaca
aacacatcgctattaagtctcaacccttactttcttattcatccccaaga
tctaaataactttaaatgtcccacagtctttgcaaattctcacatattaa
aatttcaatccctttaaaatatccaacgtctttttacaattaaaagtctc
ttaactgtgggctccactaaattattttcttccttcaagagggaaaaata
tcatgggaaagtcacaatcaaactcaaaatcaaactccaaccgtccatat
ctgggatccactcatgatcttgtgccatgagagcccctcatttcccctca
attctgatatctttactttgcctcattcctttctttcttcctttaatttc
ttgggggaacattttaacaatgtctgccagactttggatcactacagaat
tccagatctctctggttagtttcctctgcattgttggtctatcccatgga
ctactataggtaccctgttctcttctgacttgttgctctgccagactttt
agactcttctttcctgcagtcttagaaactcccaaggaaaaagagcccaa
gctcacagcttcccatctctctaaagttgggtattcttttattacttgtg
tttactgtttgaacattgttaagaactttgtttgtctctgtggaggaaga
taaacttagcattttactcttttcttattaggaggtagaaaacctaacgg
taataaaataacttttgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_196333730_196334822
seq2: B6Ng01-238D06.b_47_1153 (reverse)

seq1  GGTTGG-CCCAGAAA--GCAAGAGATA-GTGAGTTAGGGGGTGAACCA-C  45
      |||||| ||||||||  |||||||||| ||  |||||||||||||||| |
seq2  GGTTGGTCCCAGAAAAGGCAAGAGATAGGTAGGTTAGGGGGTGAACCATC  50

seq1  CAGGGGAAG-CAAGGTATAAAAGCTTGCCAAAGACATGCTTTAGTTGG-T  93
      ||||||||| ||||||||||||   |||||||||||||||| |||||| |
seq2  CAGGGGAAGCCAAGGTATAAAAAGCTGCCAAAGACATGCTTAAGTTGGTT  100

seq1  CCTGGATGTCCACCAGGA-CCAGGTTTTTATACATCACTCAGTGAA-CAA  141
      | |||||||||||||||| ||||| ||||||||||||||||||||| |||
seq2  CTTGGATGTCCACCAGGACCCAGGGTTTTATACATCACTCAGTGAACCAA  150

seq1  GAGTAACC-TGAAGTCCTTTAGGAA-GGAAGCAGTTCAGGTCTCACATAA  189
      |||||||| |||||||| ||||||| |||||||  |||||||||||||||
seq2  GAGTAACCTTGAAGTCC-TTAGGAAGGGAAGCAAGTCAGGTCTCACATAA  199

seq1  C-AGAGAGATATACACTTGCT-CTTCATAAAGA-GTTC-TTAGTCTCACC  235
      | ||||||||||||||||||| ||||||||||| |||| |||||||||||
seq2  CAAGAGAGATATACACTTGCTCCTTCATAAAGAGGTTCTTTAGTCTCACC  249

seq1  TCCACCTCCCTGGAGGTTCACCTCCATGACTGAATTGCATATAAGCCCGA  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCCCTGGAGGTTCACCTCCATGACTGAATTGCATATAAGCCCGA  299

seq1  GTGACCACAATGATACCACTCTTTCCCTACAATTCCCTTTTCTTAAAATT  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCACAATGATACCACTCTTTCCCTACAATTCCCTTTTCTTAAAATT  349

seq1  AAATACTCTCTTTGGATCTGGAACAGAAGCAATTCCAATAGAAAAGACAG  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTCTCTTTGGATCTGGAACAGAAGCAATTCCAATAGAAAAGACAG  399

seq1  ATGGAAATGCTTTGTATAATAACCCTTGGCATATAGATGGTCTTTTTTCT  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAATGCTTTGTATAATAACCCTTGGCATATAGATGGTCTTTTTTCT  449

seq1  CTTAATTGGGGGCTTTAGGGACTGAAAAATTTGGTATGGTCCCTATGTTG  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTGGGGGCTTTAGGGACTGAAAAATTTGGTATGGTCCCTATGTTG  499

seq1  AAGATGTTGGTAACCCATGAAAGAAGCTGGGGTGCACTGAAGAAAGGGGC  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTTGGTAACCCATGAAAGAAGCTGGGGTGCACTGAAGAAAGGGGC  549

seq1  TGGGAGCAAAATAGTTTTTTTAGGTAGGCACAAAACTAGGGGACTGTTTT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGCAAAATAGTTTTTTTAGGTAGGCACAAAACTAGGGGACTGTTTT  599

seq1  CCTGATACCTCTAAGCAGGAGACTAAATACCCCTGTCCTTCATGACAATT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATACCTCTAAGCAGGAGACTAAATACCCCTGTCCTTCATGACAATT  649

seq1  TGATAGCAAGCAGGCACCCAGACTCCAGACCAGCATAAACACTGAATGTA  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGCAAGCAGGCACCCAGACTCCAGACCAGCATAAACACTGAATGTA  699

seq1  GTCAGAGTTATAGGGACAATGTGGTTCCCCTCCAAATCAAAGCAGTATTT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGTTATAGGGACAATGTGGTTCCCCTCCAAATCAAAGCAGTATTT  749

seq1  CTTTTATTTTTAAGTATTGTAAAGTTGGTTGGCAATAATTTACTCCCCTG  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTTTTAAGTATTGTAAAGTTGGTTGGCAATAATTTACTCCCCTG  799

seq1  CTGACAATCTATGACCAAATTTCAGTCCCACTGGAAATGGTTGTGATCTA  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAATCTATGACCAAATTTCAGTCCCACTGGAAATGGTTGTGATCTA  849

seq1  TGCTCTTACAGAGAAAAGAAGTAAAAATGAAAGAATGTAAACACAGGCCA  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTACAGAGAAAAGAAGTAAAAATGAAAGAATGTAAACACAGGCCA  899

seq1  CCTCCCCCCTCCAAGTCCTAGCTCTTTTAATGGACAAGTTGACAGAGTCC  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCCCTCCAAGTCCTAGCTCTTTTAATGGACAAGTTGACAGAGTCC  949

seq1  TTAACCAGCATCTCTCCAGGGCCATGCCATAATTGCAGGCTGGGAAGGAG  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCAGCATCTCTCCAGGGCCATGCCATAATTGCAGGCTGGGAAGGAG  999

seq1  AGTTATGTTTCATGTGATTAGAGAGTGTTTGTGCTTCTGTCCATTAGGAA  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGTTTCATGTGATTAGAGAGTGTTTGTGCTTCTGTCCATTAGGAA  1049

seq1  CAAAGAGGAGGAAGCATTTTCAAGAACTGGATGCCAAACATCATTCACCA  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGGAGGAAGCATTTTCAAGAACTGGATGCCAAACATCATTCACCA  1099

seq1  GGGAATTC  1093
      ||||||||
seq2  GGGAATTC  1107


seq1: chr1_196195851_196196793
seq2: B6Ng01-238D06.g_242_1183

seq1  ACCGTCAGCTTGCTTTCTTATAGAACCCAAGACTACCAGCCCAGGAATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTCAGCTTGCTTTCTTATAGAACCCAAGACTACCAGCCCAGGAATGG  50

seq1  CACCAGCCACAATGGGCCCTCTCTTGATCACTAATTGAGAAAATGCTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCCACAATGGGCCCTCTCTTGATCACTAATTGAGAAAATGCTTTA  100

seq1  CAGCTGGATCTCATGGAGGCATTTCCTCAAGGGAGGCTTCTTTCTCTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGATCTCATGGAGGCATTTCCTCAAGGGAGGCTTCTTTCTCTGTA  150

seq1  ATAACTCCAACCTGTGTCAAGTTGACACACAAAACCAGCCAGTGCAATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTCCAACCTGTGTCAAGTTGACACACAAAACCAGCCAGTGCAATTG  200

seq1  ACCCCTTGTAAACTTGACACACAAACACATCGCTATTAAGTCTCAACCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTTGTAAACTTGACACACAAACACATCGCTATTAAGTCTCAACCCT  250

seq1  TACTTTCTTATTCATCCCCAAGATCTAAATAACTTTAAATGTCCCACAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCTTATTCATCCCCAAGATCTAAATAACTTTAAATGTCCCACAGT  300

seq1  CTTTGCAAATTCTCACATATTAAAATTTCAATCCCTTTAAAATATCCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCAAATTCTCACATATTAAAATTTCAATCCCTTTAAAATATCCAAC  350

seq1  GTCTTTTTACAATTAAAAGTCTCTTAACTGTGGGCTCCACTAAATTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTTACAATTAAAAGTCTCTTAACTGTGGGCTCCACTAAATTATTT  400

seq1  TCTTCCTTCAAGAGGGAAAAATATCATGGGAAAGTCACAATCAAACTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTCAAGAGGGAAAAATATCATGGGAAAGTCACAATCAAACTCAA  450

seq1  AATCAAACTCCAACCGTCCATATCTGGGATCCACTCATGATCTTGTGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAACTCCAACCGTCCATATCTGGGATCCACTCATGATCTTGTGCCA  500

seq1  TGAGAGCCCCTCATTTCCCCTCAATTCTGATATCTTTACTTTGCCTCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGCCCCTCATTTCCCCTCAATTCTGATATCTTTACTTTGCCTCATT  550

seq1  CCTTTCTTTCTTCCTTTAATTTCTTGGGGGAACATTTTAACAATGTCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTTCTTCCTTTAATTTCTTGGGGGAACATTTTAACAATGTCTGC  600

seq1  CAGACTTTGGATCACTACAGAATTCCAGATCTCTCTGGTTAGTTTCCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTTGGATCACTACAGAATTCCAGATCTCTCTGGTTAGTTTCCTCT  650

seq1  GCATTGTTGGTCTATCCCATGGACTACTATAGGTACCCTGTTCTCTTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTTGGTCTATCCCATGGACTACTATAGGTACCCTGTTCTCTTCTG  700

seq1  ACTTGTTGCTCTGCCAGACTTTTAGACTCTTCTTTCCTGCAGTCTTAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTGCTCTGCCAGACTTTTAGACTCTTCTTTCCTGCAGTCTTAGAA  750

seq1  ACTCCCAAG--AAAAGAGCCCAAGCTCACAGCTTCCCATCTCTCTAAAGT  798
      |||||||||  |||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCAAGGAAAAAGAGCCCAAGCTCACAGCTTCCCATCTCTCTAAAGT  800

seq1  T-GGTATTC-TTTATTACTTGTTGTTTACTGTTTTGAACATTGTTAAGAA  846
      | ||||||| ||||||||||| ||||||||| ||||||||||||||||||
seq2  TGGGTATTCTTTTATTACTTG-TGTTTACTG-TTTGAACATTGTTAAGAA  848

seq1  CTTTTGTTTGTCTTCTGTGGAGGAAGATAAACTTAAGCATTTTTACTC-T  895
      | |||||||||| ||||||||||||||||||||| |||| |||||||| |
seq2  C-TTTGTTTGTC-TCTGTGGAGGAAGATAAACTT-AGCA-TTTTACTCTT  894

seq1  TTCTTAATTAGAAGTAGAAAACCTTAC-GTAATAATATTAATTTTTGTA  943
      |||||| |  || ||||||||||| || ||||||| | ||| |||||||
seq2  TTCTTATTAGGAGGTAGAAAACCTAACGGTAATAA-AATAACTTTTGTA  942


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