BAC Information

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BAC

Clone NameB6Ng01-238F21
Chromosome1 (Build37)
Map Location 112,113,472 - 112,114,547
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666508, Cdh7
Downstream geneLOC100041429, EG626652, Cdh19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238F21.bB6Ng01-238F21.g
ACCGA049081GA049082
length1,1891,069
definitionB6Ng01-238F21.b B6Ng01-238F21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctatgagccccattttttaatggggttatttgatt
tttttggagtccaccttcttgagttctttataaatatatatattggatat
tagtcctctatctgatttaggataggtaaagatcctttcccaatctgttg
gtggtctttttgtcttgttgatggtgtcttttgccttaccgaagctttgc
agtttcatgaggtcccatttgtcaattctctatcttacagcacaagtcat
tgctgttctattcaggaatttttcccctgtgccaatgtgctgcccatttt
ctccctacctattcaacattgtacttgaagtcctagccagagcaatttga
caacaaaatatcaatatatatcatatatatgatatcaaggggatacaaat
tggaaaagaagaagtcaaaatatcacattttgcagatgatatgatagtat
atataagtgaccctaaatattccaccagagaaatcctaagcctgataaac
agcttcaatgaagtagctggatataaaattaactcgaacaagtcaatggc
ctttctctcaaagaataaacaggctgagaaagaaattagtgaaacaacat
cctcctcaattgtcacaaataatataaaataccttggcatgactctaact
aaggaagtaaaagatctgtatgataagaacttcaagtctctgaagaaaga
aattaaagaagatctcagaagatggaaagatctcccatgttcatggattg
gcaggatcaacattgtaaaaatggctatcttgccaaaagcaatctataga
ttcaatgcaatccccatcaaaattccaactcaattcttcaacgaaattag
aaagagcaatctgcaaattcatctggaataacaaaaaacctaggatagca
aaaactcttctcaaggataaaataacctttggtggaatcaccatgcctga
cctaagctttactatagagcaattgtgatcaaaatggcatggtactggta
tatgacagaaaatagacaatgatagaattgagacccagaaatgaccacat
actatgtcacttgattttaccagggagcctaaacatcaggtgtaaaaaga
cagcatttcaacaaatgtgtcttggcaataagtggtgtatcctgtgaaga
agtggtactggatccattctcaatctctctgtgactcag
gaattcaagacaagctcctagaaacatgtaaacttatgaatgaagagatg
ctcccagcaaagatatcttggaatggcttccaagaccatgcttagaacac
atgccttacatccacacagatcttggacatttctagtttgattttatagt
gatgatatatcttcaataattaggattgaataagagaaaacagttgaata
atttttacctctctataatcatctttacaaattctgattttcctgagact
ttaataagaagaaaaatatacaaatatagttacaaaaaaagaaaaaatct
atatactcgatattacatagttattgagataataatacatgcggaagtca
gattgttactagttaacagaaatacaaaattggtttctgaatttccattt
ttaattttcaatatatcaaaatacaataatacatgtcatatagaaaaatc
actggtaacagttactacttcttattggaaatttcctttccttcaagaaa
gaagaaacagactttgtgaaatcatgaagttgttttgaaatgagatattt
gtactgatagacagatttaccctatgccagcagtctccattgaagtttgc
tagagatggccatcaaaaagatattaaaagatactgacaagggatgttta
aaacaatgtttttgaattattaatgaaactgcaaggacagaatcaagtat
ttcaatggagctcataatctttgaaaatactaataatgaatactaaaatt
taatgacatccacagtaataccaaaatgcaccagttcatttgccattaac
ctttcccatgttcctctaggaggtctttaaatttttaggatagggtacca
tttaatggcaaggacaggtgactttcattttagtgagatatatttaattg
ggcaaggtacaggcaaagagatatgaaaaacttagaggaaactattacag
ccaaaataagaagcctggaaatgtatttctcagaaatggtcaaataagat
ccaatttatcttagaaaaatactaaaattcctcaatgttaggtagcattt
acagatattgacaagaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_112113472_112114547
seq2: B6Ng01-238F21.g_68_1136 (reverse)

seq1  GTTTCTTGTCAAATATCTGTAAATTGCTACTATACATTTGAGG-ATTTTA  49
      |||||||||| |||||||||||| ||||||   ||| |||||| ||||||
seq2  GTTTCTTGTC-AATATCTGTAAA-TGCTACCTAACA-TTGAGGAATTTTA  47

seq1  GTATTTTTTCTAAAGATTAAATTGGAATCTATTTGACCATTTCTGAGAAA  99
      ||| ||||||| |||| |||||||||   |||||||||||||||||||||
seq2  GTA-TTTTTCT-AAGA-TAAATTGGATCTTATTTGACCATTTCTGAGAAA  94

seq1  TACATTTCCAGGCTTCCTTATTTTGGCTGTAATAGTTTCCTCTAAGTTTT  149
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TACATTTCCAGGCTT-CTTATTTTGGCTGTAATAGTTTCCTCTAAGTTTT  143

seq1  TCATATCTCTTTGCCTGTACCCTTGCCCAATTAAATATATCTCACTAAAA  199
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCATATCTCTTTGCCTGTA-CCTTGCCCAATTAAATATATCTCACTAAAA  192

seq1  TGAAAGTCACCTGTCCTTGCCATTAAATGGTACCCTATCCTAAAAATTTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTCACCTGTCCTTGCCATTAAATGGTACCCTATCCTAAAAATTTA  242

seq1  AAGACCTCCTAGAGGAACATGGGAAAGGTTAATGGCAAATGAACTGGTGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTCCTAGAGGAACATGGGAAAGGTTAATGGCAAATGAACTGGTGC  292

seq1  ATTTTGGTATTACTGTGGATGTCATTAAATTTTAGTATTCATTATTAGTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGTATTACTGTGGATGTCATTAAATTTTAGTATTCATTATTAGTA  342

seq1  TTTTCAAAGATTATGAGCTCCATTGAAATACTTGATTCTGTCCTTGCAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAAGATTATGAGCTCCATTGAAATACTTGATTCTGTCCTTGCAGT  392

seq1  TTCATTAATAATTCAAAAACATTGTTTTAAACATCCCTTGTCAGTATCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAATAATTCAAAAACATTGTTTTAAACATCCCTTGTCAGTATCTT  442

seq1  TTAATATCTTTTTGATGGCCATCTCTAGCAAACTTCAATGGAGACTGCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATCTTTTTGATGGCCATCTCTAGCAAACTTCAATGGAGACTGCTG  492

seq1  GCATAGGGTAAATCTGTCTATCAGTACAAATATCTCATTTCAAAACAACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGGGTAAATCTGTCTATCAGTACAAATATCTCATTTCAAAACAACT  542

seq1  TCATGATTTCACAAAGTCTGTTTCTTCTTTCTTGAAGGAAAGGAAATTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATTTCACAAAGTCTGTTTCTTCTTTCTTGAAGGAAAGGAAATTTC  592

seq1  CAATAAGAAGTAGTAACTGTTACCAGTGATTTTTCTATATGACATGTATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAGAAGTAGTAACTGTTACCAGTGATTTTTCTATATGACATGTATT  642

seq1  ATTGTATTTTGATATATTGAAAATTAAAAATGGAAATTCAGAAACCAATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATTTTGATATATTGAAAATTAAAAATGGAAATTCAGAAACCAATT  692

seq1  TTGTATTTCTGTTAACTAGTAACAATCTGACTTCCGCATGTATTATTATC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTTCTGTTAACTAGTAACAATCTGACTTCCGCATGTATTATTATC  742

seq1  TCAATAACTATGTAATATCGAGTATATAGATTTTTTCTTTTTTTGTAACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAACTATGTAATATCGAGTATATAGATTTTTTCTTTTTTTGTAACT  792

seq1  ATATTTGTATATTTTTCTTCTTATTAAAGTCTCAGGAAAATCAGAATTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGTATATTTTTCTTCTTATTAAAGTCTCAGGAAAATCAGAATTTG  842

seq1  TAAAGATGATTATAGAGAGGTAAAAATTATTCAACTGTTTTCTCTTATTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATGATTATAGAGAGGTAAAAATTATTCAACTGTTTTCTCTTATTC  892

seq1  AATCCTAATTATTGAAGATATATCATCACTATAAAATCAAACTAGAAATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTAATTATTGAAGATATATCATCACTATAAAATCAAACTAGAAATG  942

seq1  TCCAAGATCTGTGTGGATGTAAGGCATGTGTTCTAAGCATGGTCTTGGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGATCTGTGTGGATGTAAGGCATGTGTTCTAAGCATGGTCTTGGAA  992

seq1  GCCATTCCAAGATATCTTTGCTGGGAGCATCTCTTCATTCATAAGTTTAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTCCAAGATATCTTTGCTGGGAGCATCTCTTCATTCATAAGTTTAC  1042

seq1  ATGTTTCTAGGAGCTTGTCTTGAATTC  1076
      |||||||||||||||||||||||||||
seq2  ATGTTTCTAGGAGCTTGTCTTGAATTC  1069