BAC Information

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BAC

Clone NameB6Ng01-239E15
Chromosome1 (Build37)
Map Location 131,407,616 - 131,566,763
singlet/doubletdoublet
Overlap geneThsd7b
Upstream geneLOC620659, Cxcr4, LOC100042732
Downstream geneLOC100042745, LOC100042740, Daf2, Cd55, Zp3r, C4bp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239E15.bB6Ng01-239E15.g
ACCGA049754GA049755
length1461,154
definitionB6Ng01-239E15.b B6Ng01-239E15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,407,616 - 131,407,761)(131,565,607 - 131,566,763)
sequence
aacatgcagatgggacctcagcaagtgttttgttttatgtcatctatttt
atggcaattggtaataggaaaataaatacaatgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtctataattatctgtttcttc

gaattcagaagcgagcatggcgtggggttcctctccaaaactcttcctgg
aactatgggagaagacattctctactgcattattcattatcttaaatgaa
atttcttgctgagctttgatctatgaagatggcttatcaagctcacccta
ctacaaagaatgatggaatgagaagacagcttggcaagttgaaacataga
aagaatggaatgggaaaattgagagcccctgacatttttcagtgtcatac
caacagccattctgctttcaggtgtatgagtttcttctttgctttgaaat
cagtacgaagtgggctcatattacctacatcaataggtgcccaaagtaag
atgaggtccacttggtgtgttgagtgcatctacatctttgaaagcaaaaa
agaatgacacatcatgcagtgagaatttatgtgtatggagtctgtcccta
gagtagtttcagtcctggtaaagcttaaagggttttagctttcaaggagc
ttaccttaaaagcttgcatggcacagataaatacaggaggaccgattcta
ggttctcagggcatccaagtcaccctaaggaatctcatgcatagttataa
gaaaaggacaggttctaattatatatggagcacaactgtgctactaatgt
tattgggaatttttctgggtcctcgggttttgaggttatatgatgtacta
cttagcttcacattgttatgaggaaatatctgacaaaagcaactttccaa
agggaggaaagattcactcctgttcacatatccagaggaagccagggaat
gcatggtggctcctctgtccatggtagctgaaccttgcagtctagctaga
agagcaagaggtaggaggtagaagtgggagtgcagaggatctctagtcct
caatatgttcccagagcctcatctgttctacctcttcttacctcagaggt
tctacaacactcagaaacagaacacccagctagaaagatggtgttgacac
atgatttgtaaggaatattcatgtcatatagaggctagttcatttttata
attatgaaaaaaaaaaacccaaggtagcattcttcttgttctagaatcca
atacctgtttccatctttctttacaggttagggccagagaaatagtgtga
aatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_131407616_131407761
seq2: B6Ng01-239E15.b_51_196

seq1  AACATGCAGATGGGACCTCAGCAAGTGTTTTGTTTTATGTCATCTATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGCAGATGGGACCTCAGCAAGTGTTTTGTTTTATGTCATCTATTTT  50

seq1  ATGGCAATTGGTAATAGGAAAATAAATACAATGTGTGTGTGTGTGTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAATTGGTAATAGGAAAATAAATACAATGTGTGTGTGTGTGTGTGT  100

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTTTATAATTATATGTTTCTTC  146
      |||||||||||||||||||||||||| ||||||||| |||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTCTATAATTATCTGTTTCTTC  146


seq1: chr1_131565607_131566763
seq2: B6Ng01-239E15.g_67_1220 (reverse)

seq1  GATTTCAC---TTTTCTCTGCCCCTTA-CTGTAAAAGAAAAGAGGGGGAA  46
      ||||||||    |||||||| |||| | |||||||   |||||  || ||
seq2  GATTTCACACTATTTCTCTGGCCCTAACCTGTAAA--GAAAGA-TGGAAA  47

seq1  CA-GTATT-GAATCTAGGACAAG-AGAATGCTAACTTTGGTTTTTTTTTT  93
      || ||||| || ||||| ||||| ||||||||| ||| ||||||||||||
seq2  CAGGTATTGGATTCTAGAACAAGAAGAATGCTACCTTGGGTTTTTTTTTT  97

seq1  TCCATTAATTTATAAAAATGAACTAAGCCTCTATATGACATGAATA-TCC  142
      | |||  | ||||||||||||||| ||||||||||||||||||||| |||
seq2  T-CAT--AATTATAAAAATGAACT-AGCCTCTATATGACATGAATATTCC  143

seq1  TTACAAATTCATGTGTTCAAACACCATCTTTCTAGCTGGGTGTTCTGTTT  192
      ||||||| ||||||||   |||||||||||||||||||||||||||||||
seq2  TTACAAA-TCATGTGT--CAACACCATCTTTCTAGCTGGGTGTTCTGTTT  190

seq1  CTGAGTGTTGTAGAACCTCTGAGGTAAGAAGAGGTAGAACAGATGAGGCT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGTTGTAGAACCTCTGAGGTAAGAAGAGGTAGAACAGATGAGGCT  240

seq1  CTGGGAACATATTTGAGGACTAGAGATCCTCTGCACTCCCACTTCTACCT  292
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAACATA-TTGAGGACTAGAGATCCTCTGCACTCCCACTTCTACCT  289

seq1  CCTACCTCTTGCTCTTCTAGCTAGACTGCAAGGTTCAGCTACCATGGACA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTCTTGCTCTTCTAGCTAGACTGCAAGGTTCAGCTACCATGGACA  339

seq1  GAGGAGCCACCATGCATTCCCTGGCTTCCTCTGGATATGTGAACAGGAGT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGCCACCATGCATTCCCTGGCTTCCTCTGGATATGTGAACAGGAGT  389

seq1  GAATCTTTCCTCCCTTTGGAAAGTTGCTTTTGTCAGATATTTCCTCATAA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTTCCTCCCTTTGGAAAGTTGCTTTTGTCAGATATTTCCTCATAA  439

seq1  CAATGTGAAGCTAAGTAGTACATCATATAACCTCAAAACCCGAGGACCCA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGAAGCTAAGTAGTACATCATATAACCTCAAAACCCGAGGACCCA  489

seq1  GAAAAATTCCCAATAACATTAGTAGCACAGTTGTGCTCCATATATAATTA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTCCCAATAACATTAGTAGCACAGTTGTGCTCCATATATAATTA  539

seq1  GAACCTGTCCTTTTCTTATAACTATGCATGAGATTCCTTAGGGTGACTTG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGTCCTTTTCTTATAACTATGCATGAGATTCCTTAGGGTGACTTG  589

seq1  GATGCCCTGAGAACCTAGAATCGGTCCTCCTGTATTTATCTGTGCCATGC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCCTGAGAACCTAGAATCGGTCCTCCTGTATTTATCTGTGCCATGC  639

seq1  AAGCTTTTAAGGTAAGCTCCTTGAAAGCTAAAACCCTTTAAGCTTTACCA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTTAAGGTAAGCTCCTTGAAAGCTAAAACCCTTTAAGCTTTACCA  689

seq1  GGACTGAAACTACTCTAGGGACAGACTCCATACACATAAATTCTCACTGC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGAAACTACTCTAGGGACAGACTCCATACACATAAATTCTCACTGC  739

seq1  ATGATGTGTCATTCTTTTTTGCTTTCAAAGATGTAGATGCACTCAACACA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTGTCATTCTTTTTTGCTTTCAAAGATGTAGATGCACTCAACACA  789

seq1  CCAAGTGGACCTCATCTTACTTTGGGCACCTATTGATGTAGGTAATATGA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGGACCTCATCTTACTTTGGGCACCTATTGATGTAGGTAATATGA  839

seq1  GCCCACTTCGTACTGATTTCAAAGCAAAGAAGAAACTCATACACCTGAAA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACTTCGTACTGATTTCAAAGCAAAGAAGAAACTCATACACCTGAAA  889

seq1  GCAGAATGGCTGTTGGTATGACACTGAAAAATGTCAGGGGCTCTCAATTT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATGGCTGTTGGTATGACACTGAAAAATGTCAGGGGCTCTCAATTT  939

seq1  TCCCATTCCATTCTTTCTATGTTTCAACTTGCCAAGCTGTCTTCTCATTC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTCCATTCTTTCTATGTTTCAACTTGCCAAGCTGTCTTCTCATTC  989

seq1  CATCATTCTTTGTAGTAGGGTGAGCTTGATAAGCCATCTTCATAGATCAA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTCTTTGTAGTAGGGTGAGCTTGATAAGCCATCTTCATAGATCAA  1039

seq1  AGCTCAGCAAGAAATTTCATTTAAGATAATGAATAATGCAGTAGAGAATG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGCAAGAAATTTCATTTAAGATAATGAATAATGCAGTAGAGAATG  1089

seq1  TCTTCTCCCATAGTTCCAGGAAGAGTTTTGGAGAGGAACCCCACGCCATG  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCCCATAGTTCCAGGAAGAGTTTTGGAGAGGAACCCCACGCCATG  1139

seq1  CTCGCTTCTGAATTC  1157
      |||||||||||||||
seq2  CTCGCTTCTGAATTC  1154


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