BAC Information

Click to search

BAC

Clone NameB6Ng01-239M17
Chromosome1 (Build37)
Map Location 68,229,074 - 68,230,224
singlet/doubletsinglet
Overlap geneErbb4
Upstream geneCps1, Kif22-ps
Downstream geneLOC667842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239M17.bB6Ng01-239M17.g
ACCGA050125GA050126
length8811,150
definitionB6Ng01-239M17.b B6Ng01-239M17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctccactaaacccatctggtcctggatttttttttttctttttct
ttttttctttcttttttttttttttttttttttttttttggttgggagac
tattaatgactacttctatttctttaggggttatgggactgtttagatgg
tttatctgatcctgttttaactttggtgcctggtatgtgtctaggaaatt
gttcatttcaccaaggttttccaatttagttgagttaaaacttttgtagt
aggatctgatgattttttggatttccacagtttccacttgttatacctcc
tttttcatttctgattttattagtttggatactgtctctgtgccctctgg
ttagtgtggctaagggtttatctattatgttgatttttctcaaaaaacca
gctcctggttttgttgtttcttcttatagttctttttgcttcaatttgtt
tgatttctgtcctgagtttgagtatttccttccatctactccttttgtgt
gtatttgcttctttttgttctagagctttcagatgtgctatcaagctgct
tgtataagctccttccagtttctttttggaggcacttagagctatgagtt
ttcctcttaacactgctttcattgtgtcccataggttttggtatgatgtg
tcttcattttcattaaattctagaaagtctttaatttctttatttcttcc
ttgaccaagttatcattgagtagagcagtgtgtcaactttcatgtgtatg
tgtgtttcccactgtttttgttggaatttaagagtagccttaatccatgg
tgatctaatagagtgtttgtgattatttccatcttcttgcatctgttgag
gcctgtttttgtgaccaattttatggtcagt

gaattcagtagatgcacagaaaaggggggatgggattgtttgcattcata
tcagaaaccaagaaaagcacccttactctgtgactctacagctttcacta
aagaccagaaggggaaaaaaaatcagtagtttctctggattgttttagat
aaagaatgtccagagaagccacccagcagagactccctcaaatgctccag
cagttggcaccgaggaagctattccagcaacctgcaggccatgtgctatg
tttgtctttttgcctaaggcatttgccaattatgtgtgctataaatgtac
gcagatctcccttccataggcaaaagtcaaagacgtgagcgatgctttcc
tacgctcctgtttattaaagagaatgaagaattctgtgtggaatgaaagc
aatattttaagcagaatccaagaaaaatcaaaagaatctaagagaatcga
tcaccagtttctaaaaatgtggtttctgcttctagaaagcgttatgtttg
gggttattttatagttgcacattgtaaatctcaggttcttcacctgtaac
aatgtaattctgctacttattaaaggtacagttgtagacgttaatataca
tgtgttagttaatgagtgcaaagtgggtgtttattgatgcctttacatag
tgagaaattcattcatgagctccagactgggatcgttgatgaaaatgaac
aaactggtagagaatagaaagaaaggcaaaacctgcatcaaaaattcaca
ccaactacaaacgtttgccttgattccacaagatggaggtgttacaaaga
gtatcctgcttgctgtgggaaggcagtattccacaatgtgtttctgagac
ttcatcccaatggattgaactcagatatccatttttctgagactcaaggg
atggaaagacacagtgggacctgaccagaatattgagttgcagagtttgt
ggtccaggagaccatttcatctgctgactctcactgccaccttgcactag
tcagaccatgaagcagtgactcttcttcatccatctggtcactctttcat
ctcttctaggtctttctattcgatatcctgaattttctcccctctctgac
acatgggggattaaggtaagtgtacaactcttgaaaacggaaggccaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_68229074_68230224
seq2: B6Ng01-239M17.g_66_1215 (reverse)

seq1  GGTTG--CTTCTGTTTTCAAGATGTTGTACACCTTACTTTAA-ACCCCAT  47
      |||||  |||| |||||||||| |||||||| ||||| ||||  ||||||
seq2  GGTTGGCCTTCCGTTTTCAAGA-GTTGTACA-CTTACCTTAATCCCCCAT  48

seq1  GTGTCAGAGAGGGGAGAAAATTCAGGATATCG-ATAGAAAGACTTAGAAG  96
      |||||||||||||||||||||||||||||||| |||||||||| ||||||
seq2  GTGTCAGAGAGGGGAGAAAATTCAGGATATCGAATAGAAAGACCTAGAAG  98

seq1  AGATGGAAAGAAGTGACCAGATGGAATGAAGAAGAGTCACTGCTTTCATG  146
      |||| ||||| ||||||||||||| |||||||||||||||||| ||||||
seq2  AGAT-GAAAG-AGTGACCAGATGG-ATGAAGAAGAGTCACTGC-TTCATG  144

seq1  GTCTGACTAGTGCAAGGTGGCAGTGAGAGTCAGCAGATGAAATGGTCTCC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGACTAGTGCAAGGTGGCAGTGAGAGTCAGCAGATGAAATGGTCTCC  194

seq1  TGGACCACAAACTCTGCAACTCAATATTCTGGTCAGGTCCCACTGTGTCT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCACAAACTCTGCAACTCAATATTCTGGTCAGGTCCCACTGTGTCT  244

seq1  TTCCATCCC-TGAGTCTCAGAAAAATGGATATCTGAGTTCAATCCATTGG  295
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCCCTTGAGTCTCAGAAAAATGGATATCTGAGTTCAATCCATTGG  294

seq1  GATGAAGTCTCAGAAACACATTGTGGAATACTGCCTTCCCACAGCAAGCA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGTCTCAGAAACACATTGTGGAATACTGCCTTCCCACAGCAAGCA  344

seq1  GGATACTCTTTGTAACACCTCCATCTTGTGGAATCAAGGCAAACGTTTGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACTCTTTGTAACACCTCCATCTTGTGGAATCAAGGCAAACGTTTGT  394

seq1  AGTTGGTGTGAATTTTTGATGCAGGTTTTGCCTTTCTTTCTATTCTCTAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTGTGAATTTTTGATGCAGGTTTTGCCTTTCTTTCTATTCTCTAC  444

seq1  CAGTTTGTTCATTTTCATCAACGATCCCAGTCTGGAGCTCATGAATGAAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGTTCATTTTCATCAACGATCCCAGTCTGGAGCTCATGAATGAAT  494

seq1  TTCTCACTATGTAAAGGCATCAATAAACACCCACTTTGCACTCATTAACT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACTATGTAAAGGCATCAATAAACACCCACTTTGCACTCATTAACT  544

seq1  AACACATGTATATTAACGTCTACAACTGTACCTTTAATAAGTAGCAGAAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATGTATATTAACGTCTACAACTGTACCTTTAATAAGTAGCAGAAT  594

seq1  TACATTGTTACAGGTGAAGAACCTGAGATTTACAATGTGCAACTATAAAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGTTACAGGTGAAGAACCTGAGATTTACAATGTGCAACTATAAAA  644

seq1  TAACCCCAAACATAACGCTTTCTAGAAGCAGAAACCACATTTTTAGAAAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCCAAACATAACGCTTTCTAGAAGCAGAAACCACATTTTTAGAAAC  694

seq1  TGGTGATCGATTCTCTTAGATTCTTTTGATTTTTCTTGGATTCTGCTTAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATCGATTCTCTTAGATTCTTTTGATTTTTCTTGGATTCTGCTTAA  744

seq1  AATATTGCTTTCATTCCACACAGAATTCTTCATTCTCTTTAATAAACAGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGCTTTCATTCCACACAGAATTCTTCATTCTCTTTAATAAACAGG  794

seq1  AGCGTAGGAAAGCATCGCTCACGTCTTTGACTTTTGCCTATGGAAGGGAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTAGGAAAGCATCGCTCACGTCTTTGACTTTTGCCTATGGAAGGGAG  844

seq1  ATCTGCGTACATTTATAGCACACATAATTGGCAAATGCCTTAGGCAAAAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCGTACATTTATAGCACACATAATTGGCAAATGCCTTAGGCAAAAA  894

seq1  GACAAACATAGCACATGGCCTGCAGGTTGCTGGAATAGCTTCCTCGGTGC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAACATAGCACATGGCCTGCAGGTTGCTGGAATAGCTTCCTCGGTGC  944

seq1  CAACTGCTGGAGCATTTGAGGGAGTCTCTGCTGGGTGGCTTCTCTGGACA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCTGGAGCATTTGAGGGAGTCTCTGCTGGGTGGCTTCTCTGGACA  994

seq1  TTCTTTATCTAAAACAATCCAGAGAAACTACTGATTTTTTTTCCCCTTCT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATCTAAAACAATCCAGAGAAACTACTGATTTTTTTTCCCCTTCT  1044

seq1  GGTCTTTAGTGAAAGCTGTAGAGTCACAGAGTAAGGGTGCTTTTCTTGGT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTAGTGAAAGCTGTAGAGTCACAGAGTAAGGGTGCTTTTCTTGGT  1094

seq1  TTCTGATATGAATGCAAACAATCCCATCCCCCCTTTTCTGTGCATCTACT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATATGAATGCAAACAATCCCATCCCCCCTTTTCTGTGCATCTACT  1144

seq1  GAATTC  1151
      ||||||
seq2  GAATTC  1150


| Home | SequenceCutter | Blast | Download |