BAC Information

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BAC

Clone NameB6Ng01-240G15
Chromosome1 (Build37)
Map Location 88,127,728 - 88,128,313
singlet/doubletsinglet
Overlap geneArmc9
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110, Sp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b
Downstream geneB3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240G15.bB6Ng01-240G15.g
ACCGA050592GA050593
length5801,184
definitionB6Ng01-240G15.b B6Ng01-240G15.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
aacctagatttatacaccatgacttgctgtggtagcccatccatatctgc
aatgtggttttctgttgggagaaaggagcacgggggtctggggaggtcgc
tcagaaggaaaagtgctatttcgtgagcatgagggcctgagtttgatccc
aagaatccatgtgaaaaagctgaaggcagactatacacctaaccctgccc
cagggggatggctggaggatgacaggaagactcctggactccctgcccag
ccagtgtagactacttggcaagctgtaggccagtgagaaggtgaccctgt
ctcagaactcaaggcagacaatgcctgagggagcacacctgaagtttacc
tgtagctcaaatgcacaccattacacgtgaatctatgcagacactcacac
acatgcatcaaaaacaacggtccatcagcttctctttctgtttccaggtt
ttgctgtgtgtgtgtgtgtttgtttctgtgtgtacctgtgtggtttgtgt
gatgtgtgttatgtgtgtatgtgtctgtatctctgtatatatatgtctgt
taatgtgtgtgtgtgtgtgtgtgtgagtat
gaattcactttgtagaccaggctggcctcgaactcagaagtccgcctccc
tctgcctcccgagtgctgggattaaccatgcccagctaggttccagcact
atttcacacagcccacaattgtgtgcaatccaggctctaagggatccaaa
tgccatcctggcctcttcaggcacctgcgcacatgagcgtgagctcgcac
gcgcacacacccgttgggggatggtttgtgcactatgcattcagatgctg
attgctgtgcccagagatctgcagtctggaagctggcactgccaaccatc
tcctgtcttaatgttgtgtaaaaattgttttctatcaccccggattagtt
aataaggaggtgatcagccaatatctgggtagaagacaaaaaggtgggac
ttccgagggtcctaggtatcgagcaggagagcgagtcaccaagagaggac
acatggaccagggaaaaagatcaagatgccaagtagtggggcatgtggct
gggtagtagggagcctaatcaggttagattagggttagcatagctcagga
tcttcccagtatagtgcaagaagctgattaataaaattgtcatggctccg
agttattattttagagcaagtgcgggcatagaaaagccctgtacatttgc
aaatatttttaatagaaagtttcaaaatgacaaaagactagggtagatcc
aaggttcacttcaggtaggctccagtggaggaacttgagagggtccgtgg
ttaggagggttcctcaatgacgttctgatgttaacggctgtatccgctca
gaggaggaagtaccctgatggcaggcaacatacacttaggtactttaggt
agcctgggcttcaggccagccgcttgccctcagatggtctgggacagaat
tgtgtttgtactttctttacaagtgtttatgtaatgtgtttctcattaaa
gggaccatgtgttcctcagtgtctgtgggaataaagtgcctttcacacag
agctgagctgaactaagaatgcctttccctactttatgcctgacaggaat
cgagctcccaagggaaattcttgttgctccacatagtccaagtgacactg
aggtaccttggagagttgagttcagacgcatttcgctatccaatctctaa
gctacttacgtatttaggggccctgtgctgatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_88127728_88128313
seq2: B6Ng01-240G15.b_43_628

seq1  GAATTCAACCTAGATTTATACACCATGACTTGCTGTGGTAGCCCATCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCTAGATTTATACACCATGACTTGCTGTGGTAGCCCATCCAT  50

seq1  ATCTGCAATGTGGTTTTCTGTTGGGAGAAAGGAGCACGGGGGTCTGGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCAATGTGGTTTTCTGTTGGGAGAAAGGAGCACGGGGGTCTGGGGA  100

seq1  GGTCGCTCAGAAGGAAAAGTGCTATTTCGTGAGCATGAGGGCCTGAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGCTCAGAAGGAAAAGTGCTATTTCGTGAGCATGAGGGCCTGAGTTT  150

seq1  GATCCCAAGAATCCATGTGAAAAAGCTGAAGGCAGACTATACACCTAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCAAGAATCCATGTGAAAAAGCTGAAGGCAGACTATACACCTAACC  200

seq1  CTGCCCCAGGGGGATGGCTGGAGGATGACAGGAAGACTCCTGGACTCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCAGGGGGATGGCTGGAGGATGACAGGAAGACTCCTGGACTCCCT  250

seq1  GCCCAGCCAGTGTAGACTACTTGGCAAGCTGTAGGCCAGTGAGAAGGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCCAGTGTAGACTACTTGGCAAGCTGTAGGCCAGTGAGAAGGTGA  300

seq1  CCCTGTCTCAGAACTCAAGGCAGACAATGCCTGAGGGAGCACACCTGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCTCAGAACTCAAGGCAGACAATGCCTGAGGGAGCACACCTGAAG  350

seq1  TTTACCTGTAGCTCAAATGCACACCATTACACGTGAATCTATGCAGACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTGTAGCTCAAATGCACACCATTACACGTGAATCTATGCAGACAC  400

seq1  TCACACACATGCATCAAAAACAACGGTCCATCAGCTTCTCTTTCTGTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACACATGCATCAAAAACAACGGTCCATCAGCTTCTCTTTCTGTTTC  450

seq1  CAGGTTTTGCTGTGTGTGTGTGTGTTTGTTTCTGTGTGTACCTGTGTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTTGCTGTGTGTGTGTGTGTTTGTTTCTGTGTGTACCTGTGTGGT  500

seq1  TTGTGTGATGTGTGTTATGTGTGTATGTGTCTGTATCTCTGTATATATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGATGTGTGTTATGTGTGTATGTGTCTGTATCTCTGTATATATAT  550

seq1  GTCTGTTAATGTGTGTGTGTGTGTGTGTGTGAGTAT  586
      ||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTAATGTGTGTGTGTGTGTGTGTGTGAGTAT  586