BAC Information

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BAC

Clone NameB6Ng01-242F01
Chromosome1 (Build37)
Map Location 117,197,466 - 117,198,610
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC227506
Downstream geneCntnap5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242F01.bB6Ng01-242F01.g
ACCGA051994GA051995
length1,1351,179
definitionB6Ng01-242F01.b B6Ng01-242F01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcatttctctacactatctttgttttgttttgttttatttaatt
ttgctcaaacaaaagcctcatagtaaggaagattctaagaacaatcttgt
ctgccaaggatatattttttttttgtttcttttaactttgggttcacttg
tttgttttgtcatttagtttttagattattaactacacttactataccct
atgcattgtcttagctaaatttgaccaatgttttgaagactataccaaga
ctatacttctgactttattgaaaggtgatagaagtccagtgaaaaaagct
agttcaatgtgattgggtccttagagggaattatctaaactcagccccct
cctctctatttttattcctttctagaaggtgaaggaggttttccagttgc
tctctctagaaatcccagcttctctacaggtgtaaaaatctgaatacaaa
gtaaatatgaagtctgaggtcaactacaggtatctttcctcagaaacatc
ctctctattattttagtaaatatcagtcactcattctggtctgggaccca
cagattctactaaattggttggccataaagccccagaggtacttctctct
gtctcatcaacataggtatcaccctcctattgcttctcatggacttttat
cacttactatagaattcaagccctcaggtctagatagctaacattacact
gactgccctgtgttgctgtcatttacttatattctgattatcccattgat
ataaaataattattaattgtgtgatatcaaattacaaacaaagaaatatt
caacgaattgtcagtttttttcctgtggtttgatccacaataggttggca
gctgtccaggctccaccaaatcacctaggtttattctcataagagaaaca
ctaattagactcagtttgtaaaaacaattaaaaaactagatatgcgtgta
gttgagaggaaggggatcagattaggactgagtaccaggtgaattggaga
ctgtcctactggagtagatataatataaatgcattgttatgcatggaaga
aattacgacattacttttttttagttatcaactttatctggaacatatat
aacatattctacgtggtagaaccttaagttataca

gaattctgacattgacctctggtctccataatcatgtgcttacacatgac
aatgcaacaatgcacacatgcagaaacaaaattaaaatagattgaggcaa
ttaaaataaaatcactgaaataaagtctttaaggaatcagatttggaaag
aatggtgtgtaaaactaatttttatatatttatatatttttaacgagggc
aatgggtcagaataaatgtgtgatgctttcattgccttctctccttaaag
atcgtgattagtgttctgaaggattttccttgaaaatatttcaagaggaa
gaaaaaatgattagcaagaattgggtgatgtccccttttagtggttcttt
catttcttagtgtatattattaaatttactatatttttgtacatggactt
gctgaagttctagcttataatagagacatggtgaagcatgtagtttagtt
tgtaccacttttgagttcccagtgagtcacatgcacacacccatctagaa
gctgcctcagatccatggataaaagacacacatacacacactagctcatc
tttgttttttttttattttgccattttttattaggtatttacctcattta
catttccaatgctataccaaaagtccctcatacccacacacccccactcc
cctaacccacccactccccctttttggccccggcgttcccctgtactggg
gcatataaagtttgcaagtccaatgggcctctctttgcagtgatggccga
cgaggccatcttttgatacatatgcagctagagacaagagctccggggta
ctgcatagttcatattgttgttccacctatagggttgcagttccctttag
ctccttgggtactttctctagctcctccattggggggccctgtggtccat
ttcaatagctgactgtgagcatccacttctgttgttttgctaggccctgg
catagtctcaacaagagacaagctaatatctgggttcttttcagcaaaat
cttgctagtgtatgcatgtgtcagcatttgaaagctgaatcatggatgat
ctctggatatgtaatcactagatggtccatcgtttctgaacactcccaat
ttgtgcctgtacttcgtcacgattttgttccaattctagagggcaaagtg
tcaacacatgtcgactcatcacgtatctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_117197466_117198610
seq2: B6Ng01-242F01.b_45_1179

seq1  GAATTCTCATTTCTCTACACTATCTTTGTTTTGTTTTGTTTTATTTAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTTCTCTACACTATCTTTGTTTTGTTTTGTTTTATTTAATT  50

seq1  TTGCTCAAACAAAAGCCTCATAGTAAGGAAGATTCTAAGAACAATCTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAAACAAAAGCCTCATAGTAAGGAAGATTCTAAGAACAATCTTGT  100

seq1  CTGCCAAGGATATATTTTTTTTTTGTTTCTTTTAACTTTGGGTTCACTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAAGGATATATTTTTTTTTTGTTTCTTTTAACTTTGGGTTCACTTG  150

seq1  TTTGTTTTGTCATTTAGTTTTTAGATTATTAACTACACTTACTATACCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTCATTTAGTTTTTAGATTATTAACTACACTTACTATACCCT  200

seq1  ATGCATTGTCTTAGCTAAATTTGACCAATGTTTTGAAGACTATACCAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTGTCTTAGCTAAATTTGACCAATGTTTTGAAGACTATACCAAGA  250

seq1  CTATACTTCTGACTTTATTGAAAGGTGATAGAAGTCCAGTGAAAAAAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACTTCTGACTTTATTGAAAGGTGATAGAAGTCCAGTGAAAAAAGCT  300

seq1  AGTTCAATGTGATTGGGTCCTTAGAGGGAATTATCTAAACTCAGCCCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAATGTGATTGGGTCCTTAGAGGGAATTATCTAAACTCAGCCCCCT  350

seq1  CCTCTCTATTTTTATTCCTTTCTAGAAGGTGAAGGAGGTTTTCCAGTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTATTTTTATTCCTTTCTAGAAGGTGAAGGAGGTTTTCCAGTTGC  400

seq1  TCTCTCTAGAAATCCCAGCTTCTCTACAGGTGTAAAAATCTGAATACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTAGAAATCCCAGCTTCTCTACAGGTGTAAAAATCTGAATACAAA  450

seq1  GTAAATATGAAGTCTGAGGTCAACTACAGGTATCTTTCCTCAGAAACATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATATGAAGTCTGAGGTCAACTACAGGTATCTTTCCTCAGAAACATC  500

seq1  CTCTCTATTATTTTAGTAAATATCAGTCACTCATTCTGGTCTGGGACCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTATTATTTTAGTAAATATCAGTCACTCATTCTGGTCTGGGACCCA  550

seq1  CAGATTCTACTAAATTGGTTGGCCATAAAGCCCCAGAGGTACTTCTCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCTACTAAATTGGTTGGCCATAAAGCCCCAGAGGTACTTCTCTCT  600

seq1  GTCTCATCAACATAGGTATCACCCTCCTATTGCTTCTCATGGACTTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATCAACATAGGTATCACCCTCCTATTGCTTCTCATGGACTTTTAT  650

seq1  CACTTACTATAGAATTCAAGCCCTCAGGTCTAGATAGCTAACATTACACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTACTATAGAATTCAAGCCCTCAGGTCTAGATAGCTAACATTACACT  700

seq1  GACTGCCCTGTGTTGCTGTCATTTACTTATATTCTGATTATCCCATTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCCCTGTGTTGCTGTCATTTACTTATATTCTGATTATCCCATTGAT  750

seq1  ATAAAATAATTATTAATTGTGTGATATCAAATTACAAACAAAGAAATATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAATTATTAATTGTGTGATATCAAATTACAAACAAAGAAATATT  800

seq1  CAACGAATTGTCAGTTTTTTTCCTGTGGTTTGATCCACAATAGGTTGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGAATTGTCAGTTTTTTTCCTGTGGTTTGATCCACAATAGGTTGGCA  850

seq1  GCTGTCCAGGCTCCACCAAATCACCTAGGTTTATTCTCATAAGAGAAACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCAGGCTCCACCAAATCACCTAGGTTTATTCTCATAAGAGAAACA  900

seq1  CTAATTAGACTCAGTTTGTAAAAACAA-TAAAAAACTAGATATGCGTGTA  949
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTAATTAGACTCAGTTTGTAAAAACAATTAAAAAACTAGATATGCGTGTA  950

seq1  GTTGAGAGGAA-GGGATCAGATTAGGACTGAGTACCCAGGTGGAATTGGA  998
      ||||||||||| |||||||||||||||||||||| |||||| ||||||||
seq2  GTTGAGAGGAAGGGGATCAGATTAGGACTGAGTA-CCAGGT-GAATTGGA  998

seq1  GACTGTCCTACT-GAGTAGATATAATATAAATGCATTG-TATGCATGGAA  1046
      |||||||||||| ||||||||||||||||||||||||| |||||||||||
seq2  GACTGTCCTACTGGAGTAGATATAATATAAATGCATTGTTATGCATGGAA  1048

seq1  GAAATTACCAAACAATACTTTTTTTTAGGTTATCAAATTTATTCTTAAAA  1096
      ||||||||   ||| |||||||||||| |||||||| |||||   |  ||
seq2  GAAATTAC--GACATTACTTTTTTTTA-GTTATCAACTTTAT--CTGGAA  1093

seq1  CATTATATAACCATATCTTACATTGGTAGAAACCTTTATAGTTTATACA  1145
      || ||||||| |||||  |||  |||||| |||||   ||  |||||||
seq2  CA-TATATAA-CATATTCTAC-GTGGTAG-AACCT---TAAGTTATACA  1135


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