BAC Information

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BAC

Clone NameB6Ng01-242L09
Chromosome1 (Build37)
Map Location 71,406,735 - 71,489,618
singlet/doubletdoublet
Overlap geneAbca12
Upstream geneSpag16, A830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809, Bard1, LOC667900
Downstream geneLOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5, March4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242L09.bB6Ng01-242L09.g
ACCGA052283GA052284
length1,1731,093
definitionB6Ng01-242L09.b B6Ng01-242L09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,406,735 - 71,407,921)(71,488,518 - 71,489,618)
sequence
gaattcacaagccttggtcatggaaaagtatgatcaaggataggagtgga
atctgtagagtcagacgaacctctccccagattccccagcaatgctgaat
cacgtcttcaaataatgaccctgtgagctctgagggggtgatctctgccc
ttcactgactgtgtgagcaatggcatgggccagaggttcccactgtgtga
tgtattcttagacatgcatagggaagaagtacaggggtaatctctatgat
gtcagactatccatcgctctagggaacaagaaagctgtatatatataacc
actcctttgctagacagatgctgagttcaacatctttgttgttgttgtca
tggctgcattttctttcttcctttcattgtgaagctaatgcctagaggag
tatgaacttaataacagaagtctagtgtccaaatcaaaattgcatcataa
caccaggccaccggccaggcagcagtaactgcagcgtgattgtatctttc
ataagaacatctattaaagttagcatctcagacctcttttgatgccacca
aaggtgtttctttcctctctctgagagcagaagagggagactgtttggtg
ttttaatgaggctggtgaatcttctttcaccaaagggaagcaatctagga
gtttaccgagtaaccaggtgccagtttcattgcaagactgtataaagcat
aaaagttaatagcatgccgggaaatatcattaataccattttattattgt
acataatttcctaaattaagctccagttagttcagaaaatactgaatgtg
cagcaatatgcaatgaagtagatagataacctggaggttagaaaatcatt
ttaaatagcagacattagcgattgcatttgactctctaccctaggacata
ggaacattcccctttggggaaaaatgtattaacatccatgaggcgcctgt
gacaggtaaaaaaatgccataaagaagaaaagtctaatatgtcggaatgt
acgtggatagatagacgacgacgacgactgacgacgacggatgacaacgg
tagatgaataacattaaatatcccaatgtcttctctaatgctcaggttgc
aaacaaccatcaagccaccatcctccaatgctcatttttatcaatgaaga
taggcaattcttcgttaagtgtg
gaattctgagatcatgggaagacacaaatgtgtctggcacagcgccaatg
ttctgattaaaacttaatgaggctccaaacccaaaccacccagcaaagct
gctcctaaactcctgacccacggaaacttcctgaataataactgtttatt
gttttaagctttgaggtaagttgttatatggcccccttcagccatcactg
ttaacttccattctctgagctcactgtgccctgccgtgatgaattaggtg
cgtctcctactgggttgggcagagttgggcagcatggctggggtatttgt
tacacctatcagggctaaaatgagcaggagcctggatttggttacaggaa
acttagtgctgagcctgcagctgcaactaggaagtaaagtacttagcaca
cgatgaaagcactttagttcctgacagtaactattatcacaaatataaat
atcaacaatctgccgcagttttatggacctatctatcaatctttgtacct
tgctaagaaagtctctgctttgaataagaccctagcttcaaggagctcgt
attcaataaaaggcacatgaaaaactgataaattaaatcactgaggaaaa
acacaggataaaatggagaatcatgcccgtgttagcaaagacaataacag
attcaaggaaaatgctctgtccaagggcaggaaaagcatcttttcagggc
tggaggagactccagcgcctggtcctctccagtggtagggctctcacgca
cattctatttttgctcttgcactgcttcagaaaactattttgaagtcctt
taacatagttcccctgagaggtggggtctcgctcattgcctcctgagaag
tacatttacggttctaaaggaggcgcaagtgttgaaggctaggttttatt
ttcactggaacaggaagcagatgccacccagtagtcctctcgtggccttc
gtcctcagatggtattttagcagttttctgttgccccgaaggaagccagt
gccaaagattcttagaacaaaaagtaaaagtgatcggtgtacccctctgg
aactcaggtacagcctgtagcacagcctcacagctcatgtgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_71406735_71407921
seq2: B6Ng01-242L09.b_48_1220

seq1  GAATTCACAAGCCTTGGTCATGGAAAAGTATGATCAAGGATAGGAGTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAGCCTTGGTCATGGAAAAGTATGATCAAGGATAGGAGTGGA  50

seq1  ATCTGTAGAGTCAGACGAACCTCTCCCCAGATTCCCCAGCAATGCTGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTAGAGTCAGACGAACCTCTCCCCAGATTCCCCAGCAATGCTGAAT  100

seq1  CACGTCTTCAAATAATGACCCTGTGAGCTCTGAGGGGGTGATCTCTGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTCTTCAAATAATGACCCTGTGAGCTCTGAGGGGGTGATCTCTGCCC  150

seq1  TTCACTGACTGTGTGAGCAATGGCATGGGCCAGAGGTTCCCACTGTGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGACTGTGTGAGCAATGGCATGGGCCAGAGGTTCCCACTGTGTGA  200

seq1  TGTATTCTTAGACATGCATAGGGAAGAAGTACAGGGGTAATCTCTATGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCTTAGACATGCATAGGGAAGAAGTACAGGGGTAATCTCTATGAT  250

seq1  GTCAGACTATCCATCGCTCTAGGGAACAAGAAAGCTGTATATATATAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGACTATCCATCGCTCTAGGGAACAAGAAAGCTGTATATATATAACC  300

seq1  ACTCCTTTGCTAGACAGATGCTGAGTTCAACATCTTTGTTGTTGTTGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTTGCTAGACAGATGCTGAGTTCAACATCTTTGTTGTTGTTGTCA  350

seq1  TGGCTGCATTTTCTTTCTTCCTTTCATTGTGAAGCTAATGCCTAGAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCATTTTCTTTCTTCCTTTCATTGTGAAGCTAATGCCTAGAGGAG  400

seq1  TATGAACTTAATAACAGAAGTCTAGTGTCCAAATCAAAATTGCATCATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAACTTAATAACAGAAGTCTAGTGTCCAAATCAAAATTGCATCATAA  450

seq1  CACCAGGCCACCGGCCAGGCAGCAGTAACTGCAGCGTGATTGTATCTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGGCCACCGGCCAGGCAGCAGTAACTGCAGCGTGATTGTATCTTTC  500

seq1  ATAAGAACATCTATTAAAGTTAGCATCTCAGACCTCTTTTGATGCCACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAACATCTATTAAAGTTAGCATCTCAGACCTCTTTTGATGCCACCA  550

seq1  AAGGTGTTTCTTTCCTCTCTCTGAGAGCAGAAGAGGGAGACTGTTTGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTTTCTTTCCTCTCTCTGAGAGCAGAAGAGGGAGACTGTTTGGTG  600

seq1  TTTTAATGAGGCTGGTGAATCTTCTTTCACCAAAGGGAAGCAATCTAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATGAGGCTGGTGAATCTTCTTTCACCAAAGGGAAGCAATCTAGGA  650

seq1  GTTTACCGAGTAACCAGGTGCCAGTTTCATTGCAAGACTGTATAAAGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACCGAGTAACCAGGTGCCAGTTTCATTGCAAGACTGTATAAAGCAT  700

seq1  AAAAGTTAATAGCATGCCGGGAAATATCATTAATACCATTTTATTATTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTAATAGCATGCCGGGAAATATCATTAATACCATTTTATTATTGT  750

seq1  ACATAATTTCCTAAATTAAGCTCCAGTTAGTTCAGAAAATACTGAATGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATTTCCTAAATTAAGCTCCAGTTAGTTCAGAAAATACTGAATGTG  800

seq1  CAGCAATATGCAATGAAGTAGATAGATAACCTGGAGGTTAGAAAATCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATATGCAATGAAGTAGATAGATAACCTGGAGGTTAGAAAATCATT  850

seq1  TTAAATAGCAGACATTAGCGATTGCATTTGACTCTCTACCCTAGGACATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAGCAGACATTAGCGATTGCATTTGACTCTCTACCCTAGGACATA  900

seq1  GGAACATTCCCCTTTGGGGAAAAATGTATT-ACATCCATGAGGCGCCTGT  949
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGAACATTCCCCTTTGGGGAAAAATGTATTAACATCCATGAGGCGCCTGT  950

seq1  GACAGGTAAAAAAATGCCATAAAGAAG-AAAGTCTTAATATGTCGGAATG  998
      ||||||||||||||||||||||||||| |||||| |||||||||||||||
seq2  GACAGGTAAAAAAATGCCATAAAGAAGAAAAGTC-TAATATGTCGGAATG  999

seq1  TACGTAGATAGATAGACAGACAGACAGACAGACAGACAGACAGACAGATA  1048
      ||||| ||||||||||| ||| ||| ||| ||| ||| ||| ||| ||| 
seq2  TACGTGGATAGATAGAC-GAC-GAC-GAC-GACTGAC-GAC-GACGGAT-  1042

seq1  GACAAAACAGGTAGATGAATAAACATTAAATATCCCAAATGTCTTCTCTA  1098
      |||||    ||||||||||| ||||||||||||||| |||||||||||||
seq2  GACAA---CGGTAGATGAAT-AACATTAAATATCCC-AATGTCTTCTCTA  1087

seq1  ATGCTCAGGTTGCAAAACACCCATTTCAAGCAACCATCCTCACATGGCTT  1148
      ||||||||||||| ||||| |||  |||||| |||||||||  |||   |
seq2  ATGCTCAGGTTGC-AAACAACCA--TCAAGCCACCATCCTCCAATG--CT  1132

seq1  CCTTTTTATCAATGAAGATAG--CATTCTTCCTTAAATGTG  1187
      | |||||||||||||||||||   ||||||| |||| ||||
seq2  CATTTTTATCAATGAAGATAGGCAATTCTTCGTTAAGTGTG  1173

seq1: chr1_71488518_71489618
seq2: B6Ng01-242L09.g_68_1160 (reverse)

seq1  GTCACCATGAGCCTGTGAGGCTGTGCTTCCAGCTGTCCCCTTGAGTCCCA  50
      |||| |||||| ||||||||||||||| |  ||||| ||  ||||| |||
seq2  GTCA-CATGAG-CTGTGAGGCTGTGCTACAGGCTGTACC--TGAGTTCCA  46

seq1  GAGGGGTAACACCGATCACTTTTACTTTTTGTTCCTAGAATCCTTTGGGC  100
      ||||||| ||||||||||||||||||||||||||  ||||| ||||||  
seq2  GAGGGGT-ACACCGATCACTTTTACTTTTTGTTCTAAGAAT-CTTTGG--  92

seq1  AACTGGCTTCC-TCGGGGCAACAGAAAACTGCTAAAATACCCATCTGAGG  149
       |||||||||| ||||||||||||||||||||||||||| ||||||||||
seq2  CACTGGCTTCCTTCGGGGCAACAGAAAACTGCTAAAATA-CCATCTGAGG  141

seq1  ACGAAGGCCCACGAGAGGACTACTGGGTGGCATCTGCTTCCTGTTCCAGT  199
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAGG-CCACGAGAGGACTACTGGGTGGCATCTGCTTCCTGTTCCAGT  190

seq1  GAAAATAAAACCTAGCCTTCAACACTTGCGCCTCC-TTAGAACCGTAAAT  248
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAAAATAAAACCTAGCCTTCAACACTTGCGCCTCCTTTAGAACCGTAAAT  240

seq1  GTACTTCTCAGGAGGCAATGAGCGAGACCCCACCTCTCAGGGGAACTATG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTCTCAGGAGGCAATGAGCGAGACCCCACCTCTCAGGGGAACTATG  290

seq1  TTAAAGGACTTCAAAATAGTTTTCTGAAGCAGTGCAAGAGCAAAAATAGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGACTTCAAAATAGTTTTCTGAAGCAGTGCAAGAGCAAAAATAGA  340

seq1  ATGTGCGTGAGAGCCCTACCACTGGAGAGGACCAGGCGCTGGAGTCTCCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCGTGAGAGCCCTACCACTGGAGAGGACCAGGCGCTGGAGTCTCCT  390

seq1  CCAGCCCTGAAAAGATGCTTTTCCTGCCCTTGGACAGAGCATTTTCCTTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCTGAAAAGATGCTTTTCCTGCCCTTGGACAGAGCATTTTCCTTG  440

seq1  AATCTGTTATTGTCTTTGCTAACACGGGCATGATTCTCCATTTTATCCTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTTATTGTCTTTGCTAACACGGGCATGATTCTCCATTTTATCCTG  490

seq1  TGTTTTTCCTCAGTGATTTAATTTATCAGTTTTTCATGTGCCTTTTATTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCCTCAGTGATTTAATTTATCAGTTTTTCATGTGCCTTTTATTG  540

seq1  AATACGAGCTCCTTGAAGCTAGGGTCTTATTCAAAGCAGAGACTTTCTTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACGAGCTCCTTGAAGCTAGGGTCTTATTCAAAGCAGAGACTTTCTTA  590

seq1  GCAAGGTACAAAGATTGATAGATAGGTCCATAAAACTGCGGCAGATTGTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGTACAAAGATTGATAGATAGGTCCATAAAACTGCGGCAGATTGTT  640

seq1  GATATTTATATTTGTGATAATAGTTACTGTCAGGAACTAAAGTGCTTTCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTATATTTGTGATAATAGTTACTGTCAGGAACTAAAGTGCTTTCA  690

seq1  TCGTGTGCTAAGTACTTTACTTCCTAGTTGCAGCTGCAGGCTCAGCACTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGTGCTAAGTACTTTACTTCCTAGTTGCAGCTGCAGGCTCAGCACTA  740

seq1  AGTTTCCTGTAACCAAATCCAGGCTCCTGCTCATTTTAGCCCTGATAGGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCTGTAACCAAATCCAGGCTCCTGCTCATTTTAGCCCTGATAGGT  790

seq1  GTAACAAATACCCCAGCCATGCTGCCCAACTCTGCCCAACCCAGTAGGAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAAATACCCCAGCCATGCTGCCCAACTCTGCCCAACCCAGTAGGAG  840

seq1  ACGCACCTAATTCATCACGGCAGGGCACAGTGAGCTCAGAGAATGGAAGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCACCTAATTCATCACGGCAGGGCACAGTGAGCTCAGAGAATGGAAGT  890

seq1  TAACAGTGATGGCTGAAGGGGGCCATATAACAACTTACCTCAAAGCTTAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTGATGGCTGAAGGGGGCCATATAACAACTTACCTCAAAGCTTAA  940

seq1  AACAATAAACAGTTATTATTCAGGAAGTTTCCGTGGGTCAGGAGTTTAGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAAACAGTTATTATTCAGGAAGTTTCCGTGGGTCAGGAGTTTAGG  990

seq1  AGCAGCTTTGCTGGGTGGTTTGGGTTTGGAGCCTCATTAAGTTTTAATCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTTTGCTGGGTGGTTTGGGTTTGGAGCCTCATTAAGTTTTAATCA  1040

seq1  GAACATTGGCGCTGTGCCAGACACATTTGTGTCTTCCCATGATCTCAGAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTGGCGCTGTGCCAGACACATTTGTGTCTTCCCATGATCTCAGAA  1090

seq1  TTC  1101
      |||
seq2  TTC  1093