BAC Information

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BAC

Clone NameB6Ng01-242M04
Chromosome1 (Build37)
Map Location 91,042,655 - 91,043,735
singlet/doubletsinglet
Overlap geneSh3bp4
Upstream geneUgt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347
Downstream geneLOC383542, EG665688, Centg2, Gbx2, Asb18, Iqca
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242M04.bB6Ng01-242M04.g
ACCGA052319GA052320
length1,2451,085
definitionB6Ng01-242M04.b B6Ng01-242M04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgtactaaaaccatctggccctgttttgtttgtttgtttgtttg
tttataagacttttattaccaccaatttcactaaaggttataggtctgtt
tcaattgcttctctgatcttgatttaactttggtaagtgtatgtattgac
tgaattatccacttcttttacactttccagtttggtggagtaaaagcttc
ctaggtatgtccttatggctctctagatttcttcagtgtctcttgttatt
cccgcttcatttctgattcagttactttggatactctctttgccttttag
ttcatttgaatgagggtttgccaatttcattcattttctcaaagaactaa
ctctttgtttcattgattctttggacagggttgttttgttttgtttctat
tttattgatttcaaccctgcaattgattactttttgttttctactccttc
taggtgagtgtttttcttttcattctaaagctttcaggtctgctgttaag
cttctagtatgagatctttgcattttttctttaaaatacaggcacttagt
gctatgaacttacctcttagaaccatctttattgtgtcccataagttgtg
gcatgttgtgtattcactgtcattcaattttaggaagtctttaaattctt
tcttttgtcctgacccatttttcattcagtagtgcattgttcggtttcca
tgagtttgtaagctttctgttgtctttgttgttgatatccatctttaatc
tgtgtggtcagatgggattcaaggagttattccttttttcttgtacctac
tgaaacttgatttatgtccagctatgtggcccaattttggagaaagttcc
acagagaagaatgtatattttgtgtgtatgtgtttgtgggaaatattctg
taatatctgatagggccacttggtttatgtcagttagctccagcgtttag
ttttgtttgggatggccaggtctattgatgaaggcctcacactattggtg
aatatcagtttaatttaagctgtcataaatgcttcctttttgtgatattg
ggttagcttatgtgttttgctgcatagattgattatatttacaaacccct
ctcttgaatgaattttttttttccttttgatgaagtggtaatagtgtttc
cttcctatttctctctcggaattagacgtcacttcggcttaggcataaat
ttttttcacatctctttgtacacgcctcgtaagagacatgctatg
gaattcactggttagtttttgacaacttgacacaaactagagagtctctg
taaactgggaacctacattaagaaattgcccccatcagattggcttaagg
gcaagtctgtggagcattttcttggttaatgaatgatgtgggagggccct
gcccagcccactgtggggtgtgctgtccctgtctgctcatcctggcttgt
atagaaaagcagactgagagagccctgggcagtgagttcataagctccgt
ggttcatcctctgctcctgcttgagttcccgccctggcttcctttggaga
ccgactgagatcagtatgtgtcagccacatacatcctttcttccccctgg
gttccttttggtcacagtgattatcacagcaatagaaagcaaagtcggac
accatgggaaaagggcatgatccagaggcttctacctgggtctttgaagg
gtatctcttgtgtcattaggtccccagcagactgtgacatagtggttaaa
gcctttttgccccaacgtctggcctcgcttcaatgtgagttctggcctta
tgttgcctggtgcctataacatctgtctctactgggatgccttcttgctc
atttgagtccatggaggacagactcttggctggtataaaacagattggca
ttctaaggaatgctttagaaaggagagattctgactctgagacacactga
cctcaggctggctagggatgttgtcagagacctttccaggtcttgcagca
gcctgggctttggagcataaagtagtggaacagtcctgttttttcccaca
ggctgcccaccctgttgtatggttctgacagtcaccattgacagtagaaa
cactcggtgagctcctcttgatccttcctgcttccactgtccccagcgtt
tggccgctctcctactccatgtcttttccccacttgcccctctgtatgaa
catcatcaagcctcttctgcatcaatactgacgaccctcagagggtagaa
gcgggccatgtgaccctttgaatatggcccatggtaacatggacaaacaa
gcctgattccccaggaagcaagtgtgaattgtggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_91042655_91043735
seq2: B6Ng01-242M04.g_68_1152

seq1  GAATTCACTGGTTAGTTTTTGACAACTTGACACAAACTAGAGAGTCTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGTTAGTTTTTGACAACTTGACACAAACTAGAGAGTCTCTG  50

seq1  TAAACTGGGAACCTACATTAAGAAATTGCCCCCATCAGATTGGCTTAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGGGAACCTACATTAAGAAATTGCCCCCATCAGATTGGCTTAAGG  100

seq1  GCAAGTCTGTGGAGCATTTTCTTGGTTAATGAATGATGTGGGAGGGCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTCTGTGGAGCATTTTCTTGGTTAATGAATGATGTGGGAGGGCCCT  150

seq1  GCCCAGCCCACTGTGGGGTGTGCTGTCCCTGTCTGCTCATCCTGGCTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCCCACTGTGGGGTGTGCTGTCCCTGTCTGCTCATCCTGGCTTGT  200

seq1  ATAGAAAAGCAGACTGAGAGAGCCCTGGGCAGTGAGTTCATAAGCTCCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAAGCAGACTGAGAGAGCCCTGGGCAGTGAGTTCATAAGCTCCGT  250

seq1  GGTTCATCCTCTGCTCCTGCTTGAGTTCCCGCCCTGGCTTCCTTTGGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATCCTCTGCTCCTGCTTGAGTTCCCGCCCTGGCTTCCTTTGGAGA  300

seq1  CCGACTGAGATCAGTATGTGTCAGCCACATACATCCTTTCTTCCCCCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACTGAGATCAGTATGTGTCAGCCACATACATCCTTTCTTCCCCCTGG  350

seq1  GTTCCTTTTGGTCACAGTGATTATCACAGCAATAGAAAGCAAAGTCGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTTTGGTCACAGTGATTATCACAGCAATAGAAAGCAAAGTCGGAC  400

seq1  ACCATGGGAAAAGGGCATGATCCAGAGGCTTCTACCTGGGTCTTTGAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGGAAAAGGGCATGATCCAGAGGCTTCTACCTGGGTCTTTGAAGG  450

seq1  GTATCTCTTGTGTCATTAGGTCCCCAGCAGACTGTGACATAGTGGTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTCTTGTGTCATTAGGTCCCCAGCAGACTGTGACATAGTGGTTAAA  500

seq1  GCCTTTTTGCCCCAACGTCTGGCCTCGCTTCAATGTGAGTTCTGGCCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTTGCCCCAACGTCTGGCCTCGCTTCAATGTGAGTTCTGGCCTTA  550

seq1  TGTTGCCTGGTGCCTATAACATCTGTCTCTACTGGGATGCCTTCTTGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCTGGTGCCTATAACATCTGTCTCTACTGGGATGCCTTCTTGCTC  600

seq1  ATTTGAGTCCATGGAGGACAGACTCTTGGCTGGTATAAAACAGATTGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGTCCATGGAGGACAGACTCTTGGCTGGTATAAAACAGATTGGCA  650

seq1  TTCTAAGGAATGCTTTAGAAAGGAGAGATTCTGACTCTGAGACACACTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGGAATGCTTTAGAAAGGAGAGATTCTGACTCTGAGACACACTGA  700

seq1  CCTCAGGCTGGCTAGGGATGTTGTCAGAGACCTTTCCAGGTCTTGCAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGCTGGCTAGGGATGTTGTCAGAGACCTTTCCAGGTCTTGCAGCA  750

seq1  GCCTGGGCTTTGGAGCATAAGGTAGTGGAACAGTCCTGTTTTTTCCCACA  800
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GCCTGGGCTTTGGAGCATAAAGTAGTGGAACAGTCCTGTTTTTTCCCACA  800

seq1  GGCTGCCCACCCTGTTGTATGGTTCTGACAGTCACCATTGACAGTAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCCCACCCTGTTGTATGGTTCTGACAGTCACCATTGACAGTAGAAA  850

seq1  CACTCGGTGAGCTCCTCTTGATCCTTCCTGCTTCCACTGTCCCCAGCGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCGGTGAGCTCCTCTTGATCCTTCCTGCTTCCACTGTCCCCAGCGTT  900

seq1  TGGCCGCTCTCCTACTCCATGTCTTTTCCCCACTTGCCCCTCTGTATG-A  949
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGGCCGCTCTCCTACTCCATGTCTTTTCCCCACTTGCCCCTCTGTATGAA  950

seq1  CATCATCAAGCCTC-TCTGCATCAATACTGACGACCCTCAGA-GGTAG-A  996
      |||||||||||||| ||||||||||||||||||||||||||| ||||| |
seq2  CATCATCAAGCCTCTTCTGCATCAATACTGACGACCCTCAGAGGGTAGAA  1000

seq1  GCGGGGCATGTGACCCTTTGAATATGGCCCATGGTAACATGGGACAAACA  1046
      ||||| |||||||||||||||||||||||||||||||||| |||||||||
seq2  GCGGGCCATGTGACCCTTTGAATATGGCCCATGGTAACAT-GGACAAACA  1049

seq1  AGCCTGA-TCCCCAGGAAGGCAGTGTGGATTGTGGT  1081
      ||||||| |||||||||||  |||||| ||||||||
seq2  AGCCTGATTCCCCAGGAAGCAAGTGTGAATTGTGGT  1085