MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-243H18
Chromosome	1 (Build37)
Map Location	184,259,397 - 184,398,713
singlet/doublet	doublet
Overlap gene	Fbxo28, LOC435657, ENSMUSG00000073482, Trp53bp2, Capn2
Upstream gene	Cnih3, Ccdc121, A230079K17Rik, Lbr, EG433384, Enah, Srp9, EG625823, Degs1, 1700047M11Rik
Downstream gene	LOC666624, Capn8, 4922505E12Rik, Susd4, Tlr5
Link	Open Mouse BAC browser

Click to get alignment info.

name	Cnih3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72978 MGI:1920228
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccdc121 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:403180 MGI:2685601
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs, 3 Proteins

name	A230079K17Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:240960 MGI:2444525
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lbr (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:98386 MGI:2138281
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG433384 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433384 MGI:3647595
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Enah (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13800 MGI:108360
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 4 mRNAs

name	Srp9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27058 MGI:1350930
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG625823 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:625823 MGI:3647849
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 50 Proteins

name	Degs1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13244 MGI:1097711
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700047M11Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67330 MGI:1914580
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 13 ESTs

name	Fbxo28 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67948 MGI:1261890
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC435657 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:435657
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 18 Proteins pseudo : _no_value

name	ENSMUSG00000073482 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:669853 MGI:3642267
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	Trp53bp2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:209456 MGI:2138319
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Capn2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12334 MGI:88264
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666624 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666624
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 Proteins pseudo : _no_value

name	Capn8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:170725 MGI:2181366
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4922505E12Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433386 MGI:3618292
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Susd4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:96935 MGI:2138351
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tlr5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:53791 MGI:1858171
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cnih3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142364355 GeneID:72978 MGI:1920228
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cornichon homolog 3 (Drosophila) transcript_id : NM_028408.2

name	Ccdc121 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94364589 GeneID:403180 MGI:2685601
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs, 3 Proteins product : coiled-coil domain containing 121 transcript_id : XM_619714.3

name	A230079K17Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142347386 GeneID:240960 MGI:2444525
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA A230079K17 gene transcript_id : NM_172846.2

name	Lbr (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:19527033 GeneID:98386 MGI:2138281
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : lamin B receptor transcript_id : NM_133815.1

name	Enah (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133778996 GeneID:13800 MGI:108360
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : enabled homolog (Drosophila) transcript_id : NM_001083121.1

name	Enah (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133779001 GeneID:13800 MGI:108360
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : enabled homolog (Drosophila) transcript_id : NM_001083120.1

name	Enah (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133778938 GeneID:13800 MGI:108360
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : enabled homolog (Drosophila) transcript_id : NM_008680.2

name	Enah (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133778925 GeneID:13800 MGI:108360
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : enabled homolog (Drosophila) transcript_id : NM_010135.2

name	Srp9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31560508 GeneID:27058 MGI:1350930
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : signal recognition particle 9 transcript_id : NM_012058.2

name	EG625823 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94364596 GeneID:625823 MGI:3647849
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 50 Proteins product : predicted gene, EG625823 transcript_id : XM_890391.2

name	Degs1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802252 GeneID:13244 MGI:1097711
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : degenerative spermatocyte homolog 1 (Drosophila) transcript_id : NM_007853.3

name	1700047M11Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149245469 GeneID:67330 MGI:1914580
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 13 ESTs product : RIKEN cDNA 1700047M11 gene transcript_id : XM_001478812.1

name	Fbxo28 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:65301478 GeneID:67948 MGI:1261890
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : F-box protein 28 transcript_id : NM_175127.2

name	ENSMUSG00000073482 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149245411 GeneID:669853 MGI:3642267
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : predicted gene, ENSMUSG00000073482 transcript_id : XM_001475966.1

name	Trp53bp2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:112799850 GeneID:209456 MGI:2138319
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transformation related protein 53 binding protein 2 transcript_id : NM_173378.2

name	Capn2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142345046 GeneID:12334 MGI:88264
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calpain 2 transcript_id : NM_009794.2

name	Capn8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:18700033 GeneID:170725 MGI:2181366
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calpain 8 transcript_id : NM_130890.1

name	4922505E12Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113680843 GeneID:433386 MGI:3618292
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4922505E12 gene transcript_id : NM_001033547.2

name	Susd4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802284 GeneID:96935 MGI:2138351
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sushi domain containing 4 transcript_id : NM_144796.3

name	Tlr5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124248589 GeneID:53791 MGI:1858171
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : toll-like receptor 5 transcript_id : NM_016928.2

name	Cnih3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13386310 GeneID:72978 MGI:1920228
definition	codon_start : 1 product : cornichon homolog 3 protein_id : NP_082684.1

name	Ccdc121 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:63480792 GeneID:403180 MGI:2685601
definition	codon_start : 1 product : coiled-coil domain containing 121 protein_id : XP_619714.1

name	A230079K17Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370276 GeneID:240960 MGI:2444525
definition	GO_function : GO:0042624 - ATPase activity, uncoupled [Evidence IEA] codon_start : 1 product : hypothetical protein LOC240960 protein_id : NP_766434.1

name	Lbr (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19527034 CCDS:CCDS15584.1 GeneID:98386 MGI:2138281
definition	GO_component : GO:0016021 - integral to membrane [Evidence ISS]; GO:0005637 - nuclear inner membrane [Evidence TAS]; GO:0005652 - nuclear lamina [Evidence TAS]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 exception : mismatches in translation note : ichthyosis product : lamin B receptor protein_id : NP_598576.1

name	Enah (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:133778997 GeneID:13800 MGI:108360
definition	GO_component : GO:0015629 - actin cytoskeleton [Evidence TAS]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0030175 - filopodium [Evidence IDA]; GO:0005925 - focal adhesion [Evidence IDA]; GO:0030027 - lamellipodium [Evidence IDA]; GO:0001725 - stress fiber [Evidence IDA] GO_function : GO:0003779 - actin binding [Evidence IEA]; GO:0005522 - profilin binding [Evidence IDA] [Evidence IMP]; GO:0005515 - protein binding [Evidence IPI]; GO:0017124 - SH3 domain binding [Evidence IDA] GO_process : GO:0030036 - actin cytoskeleton organization and biogenesis [Evidence IGI]; GO:0007015 - actin filament organization [Evidence IDA]; GO:0008154 - actin polymerization and/or depolymerization [Evidence IDA]; GO:0007411 - axon guidance [Evidence IMP] [Evidence IGI]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0006928 - cell motility [Evidence IDA]; GO:0007275 - development [Evidence IEA]; GO:0046907 - intracellular transport [Evidence IEA]; GO:0007399 - nervous system development [Evidence IEA]; GO:0001843 - neural tube closure [Evidence IGI] codon_start : 1 note : isoform 4 is encoded by transcript variant 4; NPC derived proline rich protein 1 product : enabled homolog isoform 4 protein_id : NP_001076590.1

name	Enah (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:133779002 GeneID:13800 MGI:108360
definition	GO_component : GO:0015629 - actin cytoskeleton [Evidence TAS]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0030175 - filopodium [Evidence IDA]; GO:0005925 - focal adhesion [Evidence IDA]; GO:0030027 - lamellipodium [Evidence IDA]; GO:0001725 - stress fiber [Evidence IDA] GO_function : GO:0003779 - actin binding [Evidence IEA]; GO:0005522 - profilin binding [Evidence IDA] [Evidence IMP]; GO:0005515 - protein binding [Evidence IPI]; GO:0017124 - SH3 domain binding [Evidence IDA] GO_process : GO:0030036 - actin cytoskeleton organization and biogenesis [Evidence IGI]; GO:0007015 - actin filament organization [Evidence IDA]; GO:0008154 - actin polymerization and/or depolymerization [Evidence IDA]; GO:0007411 - axon guidance [Evidence IMP] [Evidence IGI]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0006928 - cell motility [Evidence IDA]; GO:0007275 - development [Evidence IEA]; GO:0046907 - intracellular transport [Evidence IEA]; GO:0007399 - nervous system development [Evidence IEA]; GO:0001843 - neural tube closure [Evidence IGI] codon_start : 1 note : isoform 3 is encoded by transcript variant 3; NPC derived proline rich protein 1 product : enabled homolog isoform 3 protein_id : NP_001076589.1

name	Enah (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:133778939 GeneID:13800 MGI:108360
definition	GO_component : GO:0015629 - actin cytoskeleton [Evidence TAS]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0030175 - filopodium [Evidence IDA]; GO:0005925 - focal adhesion [Evidence IDA]; GO:0030027 - lamellipodium [Evidence IDA]; GO:0001725 - stress fiber [Evidence IDA] GO_function : GO:0003779 - actin binding [Evidence IEA]; GO:0005522 - profilin binding [Evidence IDA] [Evidence IMP]; GO:0005515 - protein binding [Evidence IPI]; GO:0017124 - SH3 domain binding [Evidence IDA] GO_process : GO:0030036 - actin cytoskeleton organization and biogenesis [Evidence IGI]; GO:0007015 - actin filament organization [Evidence IDA]; GO:0008154 - actin polymerization and/or depolymerization [Evidence IDA]; GO:0007411 - axon guidance [Evidence IMP] [Evidence IGI]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0006928 - cell motility [Evidence IDA]; GO:0007275 - development [Evidence IEA]; GO:0046907 - intracellular transport [Evidence IEA]; GO:0007399 - nervous system development [Evidence IEA]; GO:0001843 - neural tube closure [Evidence IGI] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; NPC derived proline rich protein 1 product : enabled homolog isoform 2 protein_id : NP_032706.2

name	Enah (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:133778926 GeneID:13800 MGI:108360
definition	GO_component : GO:0015629 - actin cytoskeleton [Evidence TAS]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0030175 - filopodium [Evidence IDA]; GO:0005925 - focal adhesion [Evidence IDA]; GO:0030027 - lamellipodium [Evidence IDA]; GO:0001725 - stress fiber [Evidence IDA] GO_function : GO:0003779 - actin binding [Evidence IEA]; GO:0005522 - profilin binding [Evidence IDA] [Evidence IMP]; GO:0005515 - protein binding [Evidence IPI]; GO:0017124 - SH3 domain binding [Evidence IDA] GO_process : GO:0030036 - actin cytoskeleton organization and biogenesis [Evidence IGI]; GO:0007015 - actin filament organization [Evidence IDA]; GO:0008154 - actin polymerization and/or depolymerization [Evidence IDA]; GO:0007411 - axon guidance [Evidence IMP] [Evidence IGI]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0006928 - cell motility [Evidence IDA]; GO:0007275 - development [Evidence IEA]; GO:0046907 - intracellular transport [Evidence IEA]; GO:0007399 - nervous system development [Evidence IEA]; GO:0001843 - neural tube closure [Evidence IGI] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; NPC derived proline rich protein 1 product : enabled homolog isoform 1 protein_id : NP_034265.2

name	Srp9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755662 GeneID:27058 MGI:1350930
definition	GO_component : GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO:0005786 - signal recognition particle (sensu Eukaryota) [Evidence IEA] GO_function : GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0045900 - negative regulation of translational elongation [Evidence IEA]; GO:0006605 - protein targeting [Evidence IEA] codon_start : 1 note : signal recognition particle 9 kDa product : signal recognition particle 9 protein_id : NP_036188.1

name	EG625823 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82883344 GeneID:625823 MGI:3647849
definition	codon_start : 1 product : similar to vomeronasal V1r-type receptor V1ra16 protein_id : XP_895484.1

name	Degs1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6681175 CCDS:CCDS15587.1 GeneID:13244 MGI:1097711
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016717 - oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water [Evidence IEA] GO_process : GO:0006636 - fatty acid desaturation [Evidence IEA] codon_start : 1 note : dihydroceramide desaturase product : degenerative spermatocyte homolog 1 protein_id : NP_031879.1

name	1700047M11Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149245470 GeneID:67330 MGI:1914580
definition	codon_start : 1 product : hypothetical protein LOC67330 protein_id : XP_001478862.1

name	Fbxo28 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28201989 CCDS:CCDS15588.1 GeneID:67948 MGI:1261890
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : F-box protein 28 protein_id : NP_780336.1

name	ENSMUSG00000073482 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149245412 GeneID:669853 MGI:3642267
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001476016.1

name	Trp53bp2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:112799851 GeneID:209456 MGI:2138319
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence ISS] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0007049 - cell cycle [Evidence IEA]; GO:0007417 - central nervous system development [Evidence IMP]; GO:0009792 - embryonic development (sensu Metazoa) [Evidence IGI]; GO:0007507 - heart development [Evidence IMP]; GO:0006917 - induction of apoptosis [Evidence ISS]; GO:0045786 - negative regulation of progression through cell cycle [Evidence ISS]; GO:0010212 - response to ionizing radiation [Evidence IMP] codon_start : 1 product : tumor protein p53 binding protein, 2 protein_id : NP_775554.2

name	Capn2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753254 GeneID:12334 MGI:88264
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0004198 - calpain activity [Evidence TAS]; GO:0004197 - cysteine-type endopeptidase activity [Evidence IEA]; GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA] GO_process : GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 exception : mismatches in translation note : cysteine proteinase; m-calpain 80 kDa large subunit; m-calpain large subunit product : calpain 2 protein_id : NP_033924.1

name	Capn8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:18700034 GeneID:170725 MGI:2181366
definition	GO_function : GO:0005509 - calcium ion binding [Evidence IEA] codon_start : 1 exception : mismatches in translation function : calcium-dependent cysteine protease note : stomach-specific calpain (nCL-2) product : calpain 8 protein_id : NP_570960.1

name	4922505E12Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85702055 CCDS:CCDS15589.1 GeneID:433386 MGI:3618292
definition	codon_start : 1 product : hypothetical protein LOC433386 protein_id : NP_001028719.1

name	Susd4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30061331 CCDS:CCDS15590.1 GeneID:96935 MGI:2138351
definition	codon_start : 1 product : sushi domain containing 4 protein_id : NP_659045.2

name	Tlr5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124248590 GeneID:53791 MGI:1858171
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004872 - receptor activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0004888 - transmembrane receptor activity [Evidence IEA] GO_process : GO:0006955 - immune response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA]; GO:0045087 - innate immune response [Evidence IEA] codon_start : 1 product : toll-like receptor 5 protein_id : NP_058624.2

name	LOC435657 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:435657
definition	number : 1 pseudo : _no_value

name	LOC666624 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666624
definition	number : 1 pseudo : _no_value

name	LOC666624 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666624
definition	number : 2 pseudo : _no_value

name	LOC666624 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666624
definition	number : 3 pseudo : _no_value

name	(CDS detail)
type	STS
link
xref	UniSTS:125435
definition	standard_name : MHAa88e6.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:234293
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:128622
definition	standard_name : D1Mit273

name	(CDS detail)
type	STS
link
xref	UniSTS:123519
definition	standard_name : 21.MMHAP34FRG9.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:128891
definition	standard_name : D1Mit525

name	(CDS detail)
type	STS
link
xref	UniSTS:128891
definition	standard_name : D1Mit525

name	(CDS detail)
type	STS
link
xref	UniSTS:178546
definition	standard_name : AI505894

name	(CDS detail)
type	STS
link
xref	UniSTS:128729
definition	standard_name : D1Mit37

name	(CDS detail)
type	STS
link
xref	UniSTS:234292
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:165131
definition	standard_name : AW045240

name	(CDS detail)
type	STS
link
xref	UniSTS:265075
definition	standard_name : Enah

name	(CDS detail)
type	STS
link
xref	UniSTS:165130
definition	standard_name : AI464316

name	(CDS detail)
type	STS
link
xref	UniSTS:124725
definition	standard_name : D10727

name	(CDS detail)
type	STS
link
xref	UniSTS:217761
definition	standard_name : RH134481

name	(CDS detail)
type	STS
link
xref	UniSTS:210258
definition	standard_name : RH136265

name	(CDS detail)
type	STS
link
xref	UniSTS:258254
definition	standard_name : Enah

name	(CDS detail)
type	STS
link
xref	UniSTS:125319
definition	standard_name : MHAa78b5.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:128828
definition	standard_name : D1Mit458

name	(CDS detail)
type	STS
link
xref	UniSTS:124371
definition	standard_name : 40.MMHAP61FLF4.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:161109
definition	standard_name : RH124287

name	(CDS detail)
type	STS
link
xref	UniSTS:207262
definition	standard_name : AW822031

name	(CDS detail)
type	STS
link
xref	UniSTS:213389
definition	standard_name : RH130101

name	(CDS detail)
type	STS
link
xref	UniSTS:167281
definition	standard_name : D1Ertd578e

name	(CDS detail)
type	STS
link
xref	UniSTS:128719
definition	standard_name : D1Mit360

name	(CDS detail)
type	STS
link
xref	UniSTS:162131
definition	standard_name : RH125309

name	(CDS detail)
type	STS
link
xref	UniSTS:164142
definition	standard_name : AI746547

name	(CDS detail)
type	STS
link
xref	UniSTS:158900
definition	standard_name : AI326419

name	(CDS detail)
type	STS
link
xref	UniSTS:124546
definition	standard_name : RH118246

name	(CDS detail)
type	STS
link
xref	UniSTS:162985
definition	standard_name : RH126277

name	(CDS detail)
type	STS
link
xref	UniSTS:125499
definition	standard_name : N28096

name	(CDS detail)
type	STS
link
xref	UniSTS:178535
definition	standard_name : AI848994

name	(CDS detail)
type	STS
link
xref	UniSTS:234286
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:479048
definition	standard_name : Tlr5

name	(CDS detail)
type	STS
link
xref	UniSTS:270622
definition	standard_name : PMC133006P2

name	(CDS detail)
type	STS
link
xref	UniSTS:271724
definition	standard_name : PMC187346P1

name	(CDS detail)
type	STS
link
xref	UniSTS:166559
definition	standard_name : Tlr5

name	(CDS detail)
type	STS
link
xref	UniSTS:178538
definition	standard_name : AW050000

name	(CDS detail)
type	STS
link
xref	UniSTS:234296
definition

name	EG433384 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149245410 GeneID:433384 MGI:3647595
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : predicted gene, EG433384 transcript_id : XR_035284.1

clone name	MSMg01-537F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-158J24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-522B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-534K06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-292M22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-062A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-495K16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134E01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-440O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429D19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548L07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-297F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-124K21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-389G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-401H03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-395N05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390F20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-540D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-547H05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-440K10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-049I20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-189C23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-548I10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-061O09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-096C09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543I09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-509J23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-109L02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-362G12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133M06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-338N07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-362A06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-213C12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-472G12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-365E16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-493B23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-400F23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-141B19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389P17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-529J24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-262M05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-458B07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-434O06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-162G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-288O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-093D05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515L13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-323F11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-530C22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-517M22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-320M20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-406B20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-294E18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-438L07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-388F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-497G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-073F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-276O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070G19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-055A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213P09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-031J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134N24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-302O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138L09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-176K04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-292N15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-184C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259H17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-173G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083M19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-132A11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-274B18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-331G02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-192L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277O18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-202N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110K11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-333I16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-042J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232O16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-055K01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-007I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006H18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-154M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249J01
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-243H18.b	B6Ng01-243H18.g
ACC	GA052856	GA052857
length	1,157	1,149
definition	B6Ng01-243H18.b	B6Ng01-243H18.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(184,397,554 - 184,398,713)	(184,259,397 - 184,260,550)
sequence	gaattctctatgtaaaccaggctagcctcaaattcacagtaatctgcctg cctctgcctccctataactcaaggtatgcgtcaccacccccacctccaaa cctctgatgtggtgtattgaggcagaagtgtgtgaaactggttcacatgt tatttgaatgtcacccttcatgtattcaatactacaacaaccaccagttc aaatcacacaaattatcaaacttctaagacgagactccagaaggtaggtt cagccatctccagaataactcaaagccacctataaggtctttcattttaa caacgctccctgaatgagtgttttgtttcttcttctttttttcacagtgg ctgagtttttcagtactctgaagttacatgcctggagaggtctagtggaa gaaaacagccaatgactacacttagacactttgtatctggaccttgaact tacgggaacattgacttcatcggatgattataactgaagaatataaccgt ctgggatagatgaacttttcacatatcagagtaacatatttgcatattat taaaccaaatgcaaatgaattgcataacccttggtaaggtcagaggaagc gttacacctgtaaatagtatatcctttttacttctacacattgtcctggc catagcaatattaaatcaggaaggaatgcagagagctttaaataactggg caaatagtaaaccaatctcagaggctacaaggccttgatgggaatatttg aagaaattttaacttttaaatgcagtggtggcacctgccacagcagccca gagactgccgcttgccctgagcgaactgagaaatacaatgacgaagtagt ctgatggaggcatctaaagaacccagtctgatggaggcatctaaagaatc caggagccaggagtgtctgacacaaggccaacctgggctgcctagcaaga cccgatctcagaaaaataaatgccatttaaaaaaagggcatgcttgcttc catcatttggttctaacagaagatgggtttttatataccttttagcatct aactcaggtccttgaacatatttgggctagacacctagtctgacagtagt aagtaatggagatcactctgaaccaactgatcaggtgttgccgatcgcag aagatcg	gaattccttagagacaatgaggagttgcttttgaatgttagaaatccagc tgaggctggacaagttaagaacaagtgtccttaactgctgagccatctct ccagccctcttttttaaaaacttgagacagggtttctctgtgtagccttg gctgtcctggaacttgctctgtagaccaggctggcctcaaactcaagaat tcgtctggctcagcctccccattatgtgggtcaccactgcccggggaaga ttattcatttctagtgtacttctagctgacctttgtgcattataacctct aacaatatattatcagtgtacctgtatccaagaacacatcatgctggcac tgagggacacttaggtcctctcagtttttgcttcttgccctggctacaac aaccaataaaatgttgaacaaaatggcaataagaacagatgacaagagat agcatttattgtgacgggatgttctttgctataaagagttgaaacgtata tatgaaaaatctgtggggaaaaaaacaacagaacaaaacccaaagcacca aacaagctgcaccccccctcccaagtgtgactcaaggctgatgccacctg gaacatacctcggtagctgtgctttaacttgcttctgacacaggttatgg aacctctccactttcagaaacccctgattcaacattctctgacagaccag gtccattctcttacaaacctgtaagcagaggggagacagaattgaaagat aaagaaaaccaataaccgaatcatcagtgatgaacttgggtgggaaggtt tctgagctggtacctgttcccagaacactgtctaagctgagtccctgcca gtgccatcagtggcatacaattactgtgggagtctcactaagaactgact aatgtttggggccaagcagtaccaccgacttaagtgtatagtgaataccc tgtctgaggatgggaagagcagtaaaatgatgcacctgaagttttaagtt taaaacattcccttttttatcaaagccacccaccaaccttcaggacatca aacctttttatttcaaaatctagcagatggaattttcaatttcttcagtg aattgggctcatgatgtccaaggctcatgagactatctagactttatag
quality values	Open. Hide. 41 22 26 19 52 52 58 46 36 47 47 54 62 52 62 62 62 38 26 62 62 62 54 54 62 62 62 62 47 56 25 26 25 25 22 18 22 19 25 19 27 38 33 34 40 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 54 62 62 62 59 56 46 28 38 48 50 51 56 59 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 50 46 50 56 56 49 34 30 27 25 23 41 62 62 62 62 62 62 54 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 59 54 62 59 62 59 59 62 62 62 62 62 59 62 62 62 62 62 62 19 40 18 23 27 18 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 59 56 59 56 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 59 62 62 59 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 56 62 59 59 62 51 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 56 56 46 46 56 59 62 62 59 62 62 62 62 59 62 62 62 62 59 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 44 43 49 62 62 62 62 62 62 62 62 56 62 56 62 62 62 62 62 56 62 62 62 47 54 62 62 62 62 62 62 62 62 62 62 62 49 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 56 56 56 47 46 62 62 62 62 62 49 47 62 62 54 49 62 62 62 56 62 62 62 62 62 50 62 62 62 62 62 62 62 62 62 43 47 52 47 52 50 54 62 62 62 62 62 62 52 62 62 62 62 62 54 62 62 49 52 52 40 43 52 62 62 58 58 54 54 58 58 58 58 58 45 54 54 52 52 54 49 47 40 28 46 52 52 58 58 54 58 58 52 58 54 54 54 52 58 42 58 58 54 52 54 54 54 54 52 52 52 36 31 52 54 54 52 58 58 54 45 58 58 58 49 54 54 48 44 52 52 58 52 49 52 54 54 51 52 51 50 54 50 58 51 58 58 58 54 58 58 51 58 41 38 54 42 58 50 48 58 58 53 53 58 58 38 38 58 46 46 42 41 50 58 51 47 46 58 58 37 38 58 50 53 39 58 36 51 44 44 58 58 51 42 58 46 47 36 40 39 50 51 58 50 50 50 58 50 53 53 52 50 51 52 52 50 50 50 53 52 49 54 37 39 15 54 27 49 40 50 35 40 31 39 50 54 37 43 50 52 50 28 40 44 49 35 38 25 30 35 39 54 49 37 44 38 32 54 54 41 29 54 54 35 39 17 15 50 52 54 54 49 54 40 49 50 36 40 40 18 51 54 31 51 46 23 28 26 18 31 51 40 10 8 23 7 6 6 26 18 54 44 35 25 11 32 26 28 15 30 52 19 16 25 32 34 17 31 17 24 25 21 28 32 14 33 23 53 42 27 40 32 32 26 53 53 32 25 31 31 13 33 29 41 37 31 10 28 32 19 24 31 29 30 31 31 32 31 29 29 51 42 25 40 29 31 39 28 33 41 47 17 21 36 22 22 17 14 16 18 31 31 22 30 37 33 31 46 20 6 41 16 13 31 27 22 23 46 21 31 41 36 30 21 32 22 22 27 36 17 31 38 26 18 22 18 24 38 36 7 15 17 26 31 8 12 9 5 14 14 26 10 19 9 21 17 17 33 22 47 35 18 19 29 15 13 23 32 19 32 19 30 29 31 18 22 32 31 42 32 16 18 31 31 6 28 29 42 33 18 25 26 31 14 19 32 13 8 9 5 37 10 13 37 37 37 37 33 12 11 31 25 6 17 15 26 23 32 17 23 29 33 21 16 32 25 22 18 10 20 40 13 21 24 17 17 18 28 9 11 22 14 12 26 27 12 13 17 13 34 14 22 34 34 47 13 8 11 14 19 8 27 13 19 47 47 23 26 9 20 6 10 6 13 3 5 6 9 7 15 5 7 21 13 6 12 7 22 8 6 14 5 7 6 8 26 14 7 25 9 9 3 2 3 6 6 7 3 7 23 6 3 2 6 10 8 11 4 18 8 6 11 20 23 14 11 14 18 10 11 6 12 5 11 5 15 15 17 9 7 5 6 7 18 7 5 18 13 5 4 4 8 8 2 1 3 5 6 4 3 5 8 8 4 2 4 2 1 3 4 8 8 12 5 6 12 5 8 8 11 4	Open. 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Alignment Information

BAC End 1

BAC End 2

seq1: chr1_184397554_184398713
seq2: B6Ng01-243H18.b_47_1203 (reverse)

seq1  CGATCTTCTTGCAGACGGC-ACACCTGGCTCAGTTGG-TCAGAGTGATCT  48
      |||||||| |||   |||| |||||| | |||||||| ||||||||||||
seq2  CGATCTTC-TGCGATCGGCAACACCT-GATCAGTTGGTTCAGAGTGATCT  48

seq1  -CATTACTTACTACTTGTCAGACCTAAGTGTCTAAGGCCAAATATGGTCA  97
       ||||||||||||| ||||||| ||| |||||| || ||||||||| |||
seq2  CCATTACTTACTAC-TGTCAGA-CTAGGTGTCT-AGCCCAAATATGTTCA  95

seq1  AGGACTTGAGTTTAAGAATGCT-AAAGGTATATAAAAA-CCATCTTCTGT  145
      ||||| ||||||  || ||||| ||||||||||||||| |||||||||||
seq2  AGGACCTGAGTT--AG-ATGCTAAAAGGTATATAAAAACCCATCTTCTGT  142

seq1  TAGAACCAAATGATGGAAGCAAGCATGCCCTTTTTTTAAATTGGCATTTA  195
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TAGAACCAAATGATGGAAGCAAGCATGCCCTTTTTTTAAA-TGGCATTTA  191

seq1  -TTTTCTGAGATCGGGTCTTGCTAGGCAGCCCAGGTTGGCCTTGTGTCAG  244
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGAGATCGGGTCTTGCTAGGCAGCCCAGGTTGGCCTTGTGTCAG  241

seq1  ACACTCCTGGCTCCTGGATTCTTTAGATGCCTCCATCAGACTGGGTTCTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCTGGCTCCTGGATTCTTTAGATGCCTCCATCAGACTGGGTTCTT  291

seq1  TAGATGCCTCCATCAGACTACTTCGTCATTGTATTTCTCAGTTCGCTCAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGCCTCCATCAGACTACTTCGTCATTGTATTTCTCAGTTCGCTCAG  341

seq1  GGCAAGCGGCAGTCTCTGGGCTGCTGTGGCAGGTGCCACCACTGCATTTA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCGGCAGTCTCTGGGCTGCTGTGGCAGGTGCCACCACTGCATTTA  391

seq1  AAAGTTAAAATTTCTTCAAATATTCCCATCAAGGCCTTGTAGCCTCTGAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTAAAATTTCTTCAAATATTCCCATCAAGGCCTTGTAGCCTCTGAG  441

seq1  ATTGGTTTACTATTTGCCCAGTTATTTAAAGCTCTCTGCATTCCTTCCTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTTACTATTTGCCCAGTTATTTAAAGCTCTCTGCATTCCTTCCTG  491

seq1  ATTTAATATTGCTATGGCCAGGACAATGTGTAGAAGTAAAAAGGATATAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATATTGCTATGGCCAGGACAATGTGTAGAAGTAAAAAGGATATAC  541

seq1  TATTTACAGGTGTAACGCTTCCTCTGACCTTACCAAGGGTTATGCAATTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACAGGTGTAACGCTTCCTCTGACCTTACCAAGGGTTATGCAATTC  591

seq1  ATTTGCATTTGGTTTAATAATATGCAAATATGTTACTCTGATATGTGAAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCATTTGGTTTAATAATATGCAAATATGTTACTCTGATATGTGAAA  641

seq1  AGTTCATCTATCCCAGACGGTTATATTCTTCAGTTATAATCATCCGATGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATCTATCCCAGACGGTTATATTCTTCAGTTATAATCATCCGATGA  691

seq1  AGTCAATGTTCCCGTAAGTTCAAGGTCCAGATACAAAGTGTCTAAGTGTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATGTTCCCGTAAGTTCAAGGTCCAGATACAAAGTGTCTAAGTGTA  741

seq1  GTCATTGGCTGTTTTCTTCCACTAGACCTCTCCAGGCATGTAACTTCAGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTGGCTGTTTTCTTCCACTAGACCTCTCCAGGCATGTAACTTCAGA  791

seq1  GTACTGAAAAACTCAGCCACTGTGAAAAAAAGAAGAAGAAACAAAACACT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGAAAAACTCAGCCACTGTGAAAAAAAGAAGAAGAAACAAAACACT  841

seq1  CATTCAGGGAGCGTTGTTAAAATGAAAGACCTTATAGGTGGCTTTGAGTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGGGAGCGTTGTTAAAATGAAAGACCTTATAGGTGGCTTTGAGTT  891

seq1  ATTCTGGAGATGGCTGAACCTACCTTCTGGAGTCTCGTCTTAGAAGTTTG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGAGATGGCTGAACCTACCTTCTGGAGTCTCGTCTTAGAAGTTTG  941

seq1  ATAATTTGTGTGATTTGAACTGGTGGTTGTTGTAGTATTGAATACATGAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTGTGTGATTTGAACTGGTGGTTGTTGTAGTATTGAATACATGAA  991

seq1  GGGTGACATTCAAATAACATGTGAACCAGTTTCACACACTTCTGCCTCAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGACATTCAAATAACATGTGAACCAGTTTCACACACTTCTGCCTCAA  1041

seq1  TACACCACATCAGAGGTTTGGAGGTGGGGGTGGTGACGCATACCTTGAGT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCACATCAGAGGTTTGGAGGTGGGGGTGGTGACGCATACCTTGAGT  1091

seq1  TATAGGGAGGCAGAGGCAGGCAGATTACTGTGAATTTGAGGCTAGCCTGG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGGAGGCAGAGGCAGGCAGATTACTGTGAATTTGAGGCTAGCCTGG  1141

seq1  TTTACATAGAGAATTC  1160
      ||||||||||||||||
seq2  TTTACATAGAGAATTC  1157

seq1: chr1_184259397_184260550
seq2: B6Ng01-243H18.g_67_1215

seq1  GAATTCCTTAGAGACAATGAGGAGTTGCTTTTGAATGTTAGAAATCCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGAGACAATGAGGAGTTGCTTTTGAATGTTAGAAATCCAGC  50

seq1  TGAGGCTGGACAAGTTAAGAACAAGTGTCCTTAACTGCTGAGCCATCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTGGACAAGTTAAGAACAAGTGTCCTTAACTGCTGAGCCATCTCT  100

seq1  CCAGCCCTCTTTTTTAAAAACTTGAGACAGGGTTTCTCTGTGTAGCCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCTCTTTTTTAAAAACTTGAGACAGGGTTTCTCTGTGTAGCCTTG  150

seq1  GCTGTCCTGGAACTTGCTCTGTAGACCAGGCTGGCCTCAAACTCAAGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCTGGAACTTGCTCTGTAGACCAGGCTGGCCTCAAACTCAAGAAT  200

seq1  TCGTCTGGCTCAGCCTCCCCATTATGTGGGTCACCACTGCCCGGGGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCTGGCTCAGCCTCCCCATTATGTGGGTCACCACTGCCCGGGGAAGA  250

seq1  TTATTCATTTCTAGTGTACTTCTAGCTGACCTTTGTGCATTATAACCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCATTTCTAGTGTACTTCTAGCTGACCTTTGTGCATTATAACCTCT  300

seq1  AACAATATATTATCAGTGTACCTGTATCCAAGAACACATCATGCTGGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATATATTATCAGTGTACCTGTATCCAAGAACACATCATGCTGGCAC  350

seq1  TGAGGGACACTTAGGTCCTCTCAGTTTTTGCTTCTTGCCCTGGCTACAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGACACTTAGGTCCTCTCAGTTTTTGCTTCTTGCCCTGGCTACAAC  400

seq1  AACCAATAAAATGTTGAACAAAATGGCAATAAGAACAGATGACAAGAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATAAAATGTTGAACAAAATGGCAATAAGAACAGATGACAAGAGAT  450

seq1  AGCATTTATTGTGACGGGATGTTCTTTGCTATAAAGAGTTGAAACGTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTATTGTGACGGGATGTTCTTTGCTATAAAGAGTTGAAACGTATA  500

seq1  TATGAAAAATCTGTGGGGAAAAAAACAACAGAACAAAACCCAAAGCACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAAATCTGTGGGGAAAAAAACAACAGAACAAAACCCAAAGCACCA  550

seq1  AACAAGCTGCACCCCCCCTCCCAAGTGTGACTCAAGGCTGATGCCACCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCTGCACCCCCCCTCCCAAGTGTGACTCAAGGCTGATGCCACCTG  600

seq1  GAACATACCTCGGTAGCTGTGCTTTAACTTGCTTCTGACACAGGTTATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATACCTCGGTAGCTGTGCTTTAACTTGCTTCTGACACAGGTTATGG  650

seq1  AACCTCTCCACTTTCAGAAACCCCTGATTCAACATTCTCTGACAGACCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTCCACTTTCAGAAACCCCTGATTCAACATTCTCTGACAGACCAG  700

seq1  GTCCATTCTCTTACAAACCTGTAAGCAGAGGGGAGACAGAATTGAAAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATTCTCTTACAAACCTGTAAGCAGAGGGGAGACAGAATTGAAAGAT  750

seq1  AAAGAAAACCAATAACCGAATCATCAGTGATGAACTTGGGTGGGAAGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAACCAATAACCGAATCATCAGTGATGAACTTGGGTGGGAAGGTT  800

seq1  TCTGAGCTGGTACCTGTTCCCAGAACACTGTCTAAGCTGAGTCCCTGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCTGGTACCTGTTCCCAGAACACTGTCTAAGCTGAGTCCCTGCCA  850

seq1  GTGCCATCAGTGGCATACAATTACTGT-GGAGTCTCACTAAGAACTGACT  899
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTGCCATCAGTGGCATACAATTACTGTGGGAGTCTCACTAAGAACTGACT  900

seq1  AATGTTT-GGGCCAAGCAGTACCACCGACTTAAGTGTATAGTGAATACCC  948
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTGGGGCCAAGCAGTACCACCGACTTAAGTGTATAGTGAATACCC  950

seq1  TGTCTGAGGAT-GGAAGAGCAGTAAAATGATGCACCTGAAAGTTTTAAGT  997
      ||||||||||| |||||||||||||||||||||||||| |||||||||||
seq2  TGTCTGAGGATGGGAAGAGCAGTAAAATGATGCACCTG-AAGTTTTAAGT  999

seq1  TTAAAACATTCC--TTTTTATCAAAAGCCAACCAACCAACC-TCAGGACA  1044
      ||||||||||||  |||||||| |||||| ||| ||||||| ||||||||
seq2  TTAAAACATTCCCTTTTTTATC-AAAGCC-ACCCACCAACCTTCAGGACA  1047

seq1  ATTCAAAC--TTTTATTTCAAAAATCTAAGCAGAATGAAAATTTTCATTT  1092
        ||||||  ||||||||| ||||||| ||||| ||| || |||  ||||
seq2  --TCAAACCTTTTTATTTC-AAAATCT-AGCAG-ATGGAATTTTCAATTT  1092

seq1  CTTCCAGTG-ATTTGGCTCATGATGTCCAAGGCTTTCATTAAAGACTATC  1141
      ||| ||||| ||| |||||||||||||||||||  ||||   ||||||| 
seq2  CTT-CAGTGAATTGGGCTCATGATGTCCAAGGC--TCAT--GAGACTAT-  1136

seq1  CTAAACTTTATAG  1154
      ||| |||||||||
seq2  CTAGACTTTATAG  1149

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information