BAC Information

Click to search

BAC

Clone NameB6Ng01-244K01
Chromosome1 (Build37)
Map Location 89,027,559 - 89,217,349
singlet/doubletdoublet
Overlap geneEcel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1
Upstream genePsmd1, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3
Downstream geneTnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244K01.bB6Ng01-244K01.g
ACCGA053714GA053715
length1,121805
definitionB6Ng01-244K01.b B6Ng01-244K01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,216,229 - 89,217,349)(89,027,559 - 89,028,365)
sequence
gaattcattgaggtgttaaggtattttcctggaacacattcaggtggtta
ttatgggattctgattgttcccgtgagagggtgttgtgaaagagcttctc
ctcacattctgacttcctatctcattagaggtactctccttttcacacat
actcccatcgtgatgccattgccattatgtggctcaccatgaagacctta
ctagagcttgtgctatgcttgctggattactaacctctaaaactatgaag
cctctttacttaaaaagttaccaagcttcagtattttattatagtaattg
gaaatgggccaacacagaactctaagagggttggcctagaaaacaaaggg
aaaatacaaggaagattgaagataccaaaccagagagctgaggaaacatg
ctcaggaaaggccatagagatgatagctgtggagataagtccatttttac
actttaccaaaacagacttttactataaaacttcttggacattttcaatt
cttttcaaacctttggatgactaagaaaattaagccataaaaaaaaatct
taaaaacatatgcattctttcacctagtgatccatggcatgtccgaaaac
attatctgttttctcaatctttttcatattcaggttcatatttctgctgc
cctagagagttatctggggcactattgaactgtttctctcattttatttc
tggttctccattccaatatgtgataatttagtgttagctgtcaaatggag
ttacagagaagacagggccttataggagatacccataggggattattaga
ataacattggttgagatggaaagacctgctcactttgggcagcaacctgc
ccactgtgggcagcaccatccagtgaccagaatcctggacatataatgga
cagagggaactaaaggagcagtgtgccttcatcccggtctcctcactgtg
gatgagacatgaccagctgctttaactgctgctgcctgacttcctagcca
tgacagtctattttgacatgggaggtaaaccaagttcccttgcagttgtt
tccttggagatatttggatccagcagagaaaagaaactggaaacaccaat
ctctttcctatctgtggtatt
gaattctgccttcctctgcctcctgggtgctaggcttaaaggtgtgagcc
atcactgcccagcagtaatttaatttctaaaaatacatctttggctacag
aatcaagtctttgtgagaagccttttcctgaaaggaactggactgatggc
tagtggtgagagcattttgatgctcaaacgtgagggccagagttcagatc
tagtactactataacaagccagacaaccccagcactaaggagaacgaagc
ccaaaggatcatcagagcttgatatctatgaattccaggctcagaaacag
gctgtctcagaggaataatgcagagaaactctagaggccatctaatgctc
ttctggccatcgtgagtgctctcacatgcacctgcacacatgcaaagaaa
attctgttcaaatctgttgtcatctctccttctctgccacaagacattac
tcagtattcaaagacaatgtccttattacttttttgttaaagggacatct
ttactaaaggggcgtgatcagggaaagtgcattcattattttcaagcttt
ttaccaagtccctaaccagacaacctttgttgccttaataacgttggcac
acaaaatttaattgagagccaggcatgatggtatagccttggaattgcta
gcacttgggaagctgaggcaagaggatagccacaggttcaaaaccagctt
gggctacataaaccagcctggagtatatagtgagatactatctcaaaaaa
aaaaaaaaaaaaggagggaggaagaggagaggaaggaaagagaaaggcag
aggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_89216229_89217349
seq2: B6Ng01-244K01.b_43_1163 (reverse)

seq1  AATA-CACAGATAAGAAAGAGA-TGGTGTCT-CAGTTTCTTTTTCTCTTG  47
      |||| |||||||| |||||||| |||||| | ||||||| ||||||| ||
seq2  AATACCACAGATAGGAAAGAGATTGGTGTTTCCAGTTTC-TTTTCTC-TG  48

seq1  CTGTGAT-CAAATATCTCAAGGAAAACAACTTCCAGGGGACTTGGTTTA-  95
      ||| ||| |||||||||| | | |||||||| | |||| |||||||||| 
seq2  CTG-GATCCAAATATCTCCAAGGAAACAACTGCAAGGGAACTTGGTTTAC  97

seq1  CTCCCATGTTCAAAATAGACTGTCATGGCTAGGAAGTCAAGGCAGCAGCA  145
      |||||||| ||||||||||||||||||||||||||||| |||||||||||
seq2  CTCCCATG-TCAAAATAGACTGTCATGGCTAGGAAGTC-AGGCAGCAGCA  145

seq1  GTTTAAAGCAGCTGGTCATGTCTCATCCACAGTGAGGAGACCGGGATGAA  195
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-TTAAAGCAGCTGGTCATGTCTCATCCACAGTGAGGAGACCGGGATGAA  194

seq1  GGCACACTGCTCC-TTAGTTCCCTCTGTCCATTATATGTCCAGGATTCTG  244
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGCACACTGCTCCTTTAGTTCCCTCTGTCCATTATATGTCCAGGATTCTG  244

seq1  GTCACTGGATGGTGCTGCCCACAGTGGGCAGGTTGCTGCCCAAAGTGAGC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGGATGGTGCTGCCCACAGTGGGCAGGTTGCTGCCCAAAGTGAGC  294

seq1  AGGTCTTTCCATCTCAACCAATGTTATTCTAATAATCCCCTATGGGTATC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTTCCATCTCAACCAATGTTATTCTAATAATCCCCTATGGGTATC  344

seq1  TCCTATAAGGCCCTGTCTTCTCTGTAACTCCATTTGACAGCTAACACTAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATAAGGCCCTGTCTTCTCTGTAACTCCATTTGACAGCTAACACTAA  394

seq1  ATTATCACATATTGGAATGGAGAACCAGAAATAAAATGAGAGAAACAGTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCACATATTGGAATGGAGAACCAGAAATAAAATGAGAGAAACAGTT  444

seq1  CAATAGTGCCCCAGATAACTCTCTAGGGCAGCAGAAATATGAACCTGAAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGTGCCCCAGATAACTCTCTAGGGCAGCAGAAATATGAACCTGAAT  494

seq1  ATGAAAAAGATTGAGAAAACAGATAATGTTTTCGGACATGCCATGGATCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAAGATTGAGAAAACAGATAATGTTTTCGGACATGCCATGGATCA  544

seq1  CTAGGTGAAAGAATGCATATGTTTTTAAGATTTTTTTTTATGGCTTAATT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTGAAAGAATGCATATGTTTTTAAGATTTTTTTTTATGGCTTAATT  594

seq1  TTCTTAGTCATCCAAAGGTTTGAAAAGAATTGAAAATGTCCAAGAAGTTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGTCATCCAAAGGTTTGAAAAGAATTGAAAATGTCCAAGAAGTTT  644

seq1  TATAGTAAAAGTCTGTTTTGGTAAAGTGTAAAAATGGACTTATCTCCACA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTAAAAGTCTGTTTTGGTAAAGTGTAAAAATGGACTTATCTCCACA  694

seq1  GCTATCATCTCTATGGCCTTTCCTGAGCATGTTTCCTCAGCTCTCTGGTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCATCTCTATGGCCTTTCCTGAGCATGTTTCCTCAGCTCTCTGGTT  744

seq1  TGGTATCTTCAATCTTCCTTGTATTTTCCCTTTGTTTTCTAGGCCAACCC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATCTTCAATCTTCCTTGTATTTTCCCTTTGTTTTCTAGGCCAACCC  794

seq1  TCTTAGAGTTCTGTGTTGGCCCATTTCCAATTACTATAATAAAATACTGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGAGTTCTGTGTTGGCCCATTTCCAATTACTATAATAAAATACTGA  844

seq1  AGCTTGGTAACTTTTTAAGTAAAGAGGCTTCATAGTTTTAGAGGTTAGTA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGTAACTTTTTAAGTAAAGAGGCTTCATAGTTTTAGAGGTTAGTA  894

seq1  ATCCAGCAAGCATAGCACAAGCTCTAGTAAGGTCTTCATGGTGAGCCACA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGCAAGCATAGCACAAGCTCTAGTAAGGTCTTCATGGTGAGCCACA  944

seq1  TAATGGCAATGGCATCACGATGGGAGTATGTGTGAAAAGGAGAGTACCTC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGCAATGGCATCACGATGGGAGTATGTGTGAAAAGGAGAGTACCTC  994

seq1  TAATGAGATAGGAAGTCAGAATGTGAGGAGAAGCTCTTTCACAACACCCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGATAGGAAGTCAGAATGTGAGGAGAAGCTCTTTCACAACACCCT  1044

seq1  CTCACGGGAACAATCAGAATCCCATAATAACCACCTGAATGTGTTCCAGG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGGGAACAATCAGAATCCCATAATAACCACCTGAATGTGTTCCAGG  1094

seq1  AAAATACCTTAACACCTCAATGAATTC  1121
      |||||||||||||||||||||||||||
seq2  AAAATACCTTAACACCTCAATGAATTC  1121

seq1: chr1_89027559_89028365
seq2: B6Ng01-244K01.g_66_870

seq1  GAATTCTGCCTTCCTCTGCCTCCTGGGTGCTAGGCTTAAAGGTGTGAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCTTCCTCTGCCTCCTGGGTGCTAGGCTTAAAGGTGTGAGCC  50

seq1  ATCACTGCCCAGCAGTAATTTAATTTCTAAAAATACATCTTTGGCTACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGCCCAGCAGTAATTTAATTTCTAAAAATACATCTTTGGCTACAG  100

seq1  AATCAAGTCTTTGTGAGAAGCCTTTTCCTGAAAGGAACTGGACTGATGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGTCTTTGTGAGAAGCCTTTTCCTGAAAGGAACTGGACTGATGGC  150

seq1  TAGTGGTGAGAGCATTTTGATGCTCAAACGTGAGGGCCAGAGTTCAGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGTGAGAGCATTTTGATGCTCAAACGTGAGGGCCAGAGTTCAGATC  200

seq1  TAGTACTACTATAACAAGCCAGACAACCCCAGCACTAAGGAGAACGAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACTACTATAACAAGCCAGACAACCCCAGCACTAAGGAGAACGAAGC  250

seq1  CCAAAGGATCATCAGAGCTTGATATCTATGAATTCCAGGCTCAGAAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGATCATCAGAGCTTGATATCTATGAATTCCAGGCTCAGAAACAG  300

seq1  GCTGTCTCAGAGGAATAATGCAGAGAAACTCTAGAGGCCATCTAATGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTCAGAGGAATAATGCAGAGAAACTCTAGAGGCCATCTAATGCTC  350

seq1  TTCTGGCCATCGTGAGTGCTCTCACATGCACCTGCACACATGCAAAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCCATCGTGAGTGCTCTCACATGCACCTGCACACATGCAAAGAAA  400

seq1  ATTCTGTTCAAATCTGTTGTCATCTCTCCTTCTCTGCCACAAGACATTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTTCAAATCTGTTGTCATCTCTCCTTCTCTGCCACAAGACATTAC  450

seq1  TCAGTATTCAAAGACAATGTCCTTATTACTTTTTTGTTAAAGGGACATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATTCAAAGACAATGTCCTTATTACTTTTTTGTTAAAGGGACATCT  500

seq1  TTACTAAAGGGGCGTGATCAGGGAAAGTGCATTCATTATTTTCAAGCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAAAGGGGCGTGATCAGGGAAAGTGCATTCATTATTTTCAAGCTTT  550

seq1  TTACCAAGTCCCTAACCAGACAACCTTTGTTGCCTTAATAACGTTGGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAAGTCCCTAACCAGACAACCTTTGTTGCCTTAATAACGTTGGCAC  600

seq1  ACAAAATTTAATTGAGAGCCAGGCATGATGGTATAGCCTTGGAATTGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATTTAATTGAGAGCCAGGCATGATGGTATAGCCTTGGAATTGCTA  650

seq1  GCACTTGGGAAGCTGAGGCAAGAGGATAGCCACAGGTTCAAAACCAGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGGGAAGCTGAGGCAAGAGGATAGCCACAGGTTCAAAACCAGCTT  700

seq1  GGGCTACATAAACCAGCCTGGAGTATATAGTGAGATACTATCTCAAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||    ||
seq2  GGGCTACATAAACCAGCCTGGAGTATATAGTGAGATACTATCTC----AA  746

seq1  AAAAAAAAAAAAAAAAGGA-GGAGGAAGAGGAGAGGAAGGAAAGAG-AAG  798
      ||||||||||||||||||| |||||||||||||||||||||||||| |||
seq2  AAAAAAAAAAAAAAAAGGAGGGAGGAAGAGGAGAGGAAGGAAAGAGAAAG  796

seq1  GCAGAGGAG  807
      |||||||||
seq2  GCAGAGGAG  805