BAC Information

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BAC

Clone NameB6Ng01-245I05
Chromosome1 (Build37)
Map Location 28,207,824 - 28,302,662
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC677427, LOC100040952, EG433281
Downstream geneEG665903, Gm597, LOC435614, EG623924
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245I05.bB6Ng01-245I05.g
ACCGA054375GA054376
length7501,017
definitionB6Ng01-245I05.b B6Ng01-245I05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,301,913 - 28,302,662)(28,207,824 - 28,208,851)
sequence
gaattcttcacctttatcatgatcgtgtttaacagtttgacagaccaatt
aaagaagcacagtaaatctaggaggattatttcctttgaatgatgaacta
ctatggtttaaatatggaagttttaataacgttttaatatcacttgaggt
gaaagtgtatgtaagagtagaatctcattgtgatataaagatttaaatat
gatttaaacatgtaagttttaataacattttaatattacttgaggagaaa
atgtatgtaaaagtagaatctcattgtgatgtaaagatattttatctata
tgattagctgtgtatatcattaggcacagcttaggtatatttctgttttt
taagacagactcatgaattatgatgaacattagatagcttgtcgttttac
tcaaagtgatgagttatattctattacaatcagataatatatattacaat
cagataatatatatattccttgagttgagcatgagtatgtgtcagagaca
taaggctgaaagaagctgaggaaaagggtgatccttaggaggaccagcag
tctcaatttttctggactcctgaaatctcttaaacactggaccaccaaaa
aggcagtattcactaactgatatgaagcccccaaaccacatacagtagag
gacttccgggtctgtgttcatttagatttgatggacataactctcaagag
actggaggccccagagtttttagaggtaaggtgggttggggtgtggagac


gaattctctaggaaaaatatgaagggaatctgatcacagataatcaatca
tgtagaagaatgtagattaaaatgaatgggttatcataagttatgattct
acttagagaagagcctagtcatatggccaagtttttgtaaatatattttg
agtctgagtcttatctctgggagcatgggcctggaggaagaaccaggaca
ggatctaaaatctaaatatgtatcttaagaagaatatgagtcattctttt
aatccatctttagaacactgattttatagtagttattaaataatgtaact
tctaaatatcagactcctataaagaggagaagctaaggtagagataaatg
ttgaattagagtatgtattctttcccttcttagtagaatatattagtgtt
tcttttttctttgtattaatattaaagtgttttttaatgtgtaatttatt
caagcactcacaaattaagccttatgaaaataaatatgcttttgtttcac
atgttattcttttacagtttatattgctaacccaaacaagtacagttaat
aaaaattaaggccaggtagacagtggtggcaaacacatttagtctcagca
cttggaagccaaaggtaggaagatctctgtgagttaaaacaaaagcttgg
tccatagagtgagctccaagtaagtcagggctccacagaaaatacagaca
agaaatagaagttaaggtcaatatcccatccaatatcctgtttgtttgtg
tttcatggggggatgtagacatgctaaggacagaggtccatatttggact
attctgaaactgttctccatctttactttgacgattgaaccatctcatga
tagcttgcagtttggctaggctgagattctgctgtctaacccagtactag
cattatagttacagacacagttacagacatggctttttgcatagtgctag
ctataatatcaggggtttgttgtgtgtgtgtttgtggctgtttgttgttg
ttatttatttggttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_28301913_28302662
seq2: B6Ng01-245I05.b_49_798 (reverse)

seq1  GTCTCCACACCCCAACCCACCTTACCTCTAAAAACTCTGGGGCCTCCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCACACCCCAACCCACCTTACCTCTAAAAACTCTGGGGCCTCCAGT  50

seq1  CTCTTGAGAGTTATGTCCATCAAATCTAAATGAACACAGACCCGGAAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGAGAGTTATGTCCATCAAATCTAAATGAACACAGACCCGGAAGTC  100

seq1  CTCTACTGTATGTGGTTTGGGGGCTTCATATCAGTTAGTGAATACTGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTGTATGTGGTTTGGGGGCTTCATATCAGTTAGTGAATACTGCCT  150

seq1  TTTTGGTGGTCCAGTGTTTAAGAGATTTCAGGAGTCCAGAAAAATTGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTGGTCCAGTGTTTAAGAGATTTCAGGAGTCCAGAAAAATTGAGA  200

seq1  CTGCTGGTCCTCCTAAGGATCACCCTTTTCCTCAGCTTCTTTCAGCCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGTCCTCCTAAGGATCACCCTTTTCCTCAGCTTCTTTCAGCCTTA  250

seq1  TGTCTCTGACACATACTCATGCTCAACTCAAGGAATATATATATTATCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTGACACATACTCATGCTCAACTCAAGGAATATATATATTATCTG  300

seq1  ATTGTAATATATATTATCTGATTGTAATAGAATATAACTCATCACTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAATATATATTATCTGATTGTAATAGAATATAACTCATCACTTTGA  350

seq1  GTAAAACGACAAGCTATCTAATGTTCATCATAATTCATGAGTCTGTCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACGACAAGCTATCTAATGTTCATCATAATTCATGAGTCTGTCTTA  400

seq1  AAAAACAGAAATATACCTAAGCTGTGCCTAATGATATACACAGCTAATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAGAAATATACCTAAGCTGTGCCTAATGATATACACAGCTAATCA  450

seq1  TATAGATAAAATATCTTTACATCACAATGAGATTCTACTTTTACATACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATAAAATATCTTTACATCACAATGAGATTCTACTTTTACATACAT  500

seq1  TTTCTCCTCAAGTAATATTAAAATGTTATTAAAACTTACATGTTTAAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTCAAGTAATATTAAAATGTTATTAAAACTTACATGTTTAAATC  550

seq1  ATATTTAAATCTTTATATCACAATGAGATTCTACTCTTACATACACTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAAATCTTTATATCACAATGAGATTCTACTCTTACATACACTTTC  600

seq1  ACCTCAAGTGATATTAAAACGTTATTAAAACTTCCATATTTAAACCATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAAGTGATATTAAAACGTTATTAAAACTTCCATATTTAAACCATAG  650

seq1  TAGTTCATCATTCAAAGGAAATAATCCTCCTAGATTTACTGTGCTTCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCATCATTCAAAGGAAATAATCCTCCTAGATTTACTGTGCTTCTTT  700

seq1  AATTGGTCTGTCAAACTGTTAAACACGATCATGATAAAGGTGAAGAATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGTCTGTCAAACTGTTAAACACGATCATGATAAAGGTGAAGAATTC  750


seq1: chr1_28207824_28208851
seq2: B6Ng01-245I05.g_68_1084

seq1  GAATTCTCTAGGAAAAATATGAAGGGAATCTGATCACAGATAATCAATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGGAAAAATATGAAGGGAATCTGATCACAGATAATCAATCA  50

seq1  TGTAGAAGAATGTAGATTAAAATGAATGGGTTATCATAAGTTATGATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAGAATGTAGATTAAAATGAATGGGTTATCATAAGTTATGATTCT  100

seq1  ACTTAGAGAAGAGCCTAGTCATATGGCCAAGTTTTTGTAAATATATTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGAGAAGAGCCTAGTCATATGGCCAAGTTTTTGTAAATATATTTTG  150

seq1  AGTCTGAGTCTTATCTCTGGGAGCATGGGCCTGGAGGAAGAACCAGGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGAGTCTTATCTCTGGGAGCATGGGCCTGGAGGAAGAACCAGGACA  200

seq1  GGATCTAAAATCTAAATATGTATCTTAAGAAGAATATGAGTCATTCTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTAAAATCTAAATATGTATCTTAAGAAGAATATGAGTCATTCTTTT  250

seq1  AATCCATCTTTAGAACACTGATTTTATAGTAGTTATTAAATAATGTAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATCTTTAGAACACTGATTTTATAGTAGTTATTAAATAATGTAACT  300

seq1  TCTAAATATCAGACTCCTATAAAGAGGAGAAGCTAAGGTAGAGATAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATATCAGACTCCTATAAAGAGGAGAAGCTAAGGTAGAGATAAATG  350

seq1  TTGAATTAGAGTATGTATTCTTTCCCTTCTTAGTAGAATATATTAGTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTAGAGTATGTATTCTTTCCCTTCTTAGTAGAATATATTAGTGTT  400

seq1  TCTTTTTTCTTTGTATTAATATTAAAGTGTTTTTTAATGTGTAATTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTCTTTGTATTAATATTAAAGTGTTTTTTAATGTGTAATTTATT  450

seq1  CAAGCACTCACAAATTAAGCCTTATGAAAATAAATATGCTTTTGTTTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACTCACAAATTAAGCCTTATGAAAATAAATATGCTTTTGTTTCAC  500

seq1  ATGTTATTCTTTTACAGTTTATATTGCTAACCCAAACAAGTACAGTTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATTCTTTTACAGTTTATATTGCTAACCCAAACAAGTACAGTTAAT  550

seq1  AAAAATTAAGGCCAGGTAGACAGTGGTGGCAAACACATTTAGTCTCAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTAAGGCCAGGTAGACAGTGGTGGCAAACACATTTAGTCTCAGCA  600

seq1  CTTGGAAGCCAAAGGTAGGAAGATCTCTGTGAGTTAAAACAAAAGCTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAGCCAAAGGTAGGAAGATCTCTGTGAGTTAAAACAAAAGCTTGG  650

seq1  TCCATAGAGTGAGCTCCAAGTAAGTCAGGGCTCCACAGAAAATACAGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAGAGTGAGCTCCAAGTAAGTCAGGGCTCCACAGAAAATACAGACA  700

seq1  AGAAATAGAAGTTAAGGTCAATATCCCATCCAATATCCTGTTTGTTTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAGAAGTTAAGGTCAATATCCCATCCAATATCCTGTTTGTTTGTG  750

seq1  TTTCAT-GGGGGATGTAGACATGCTAAGGACAGAGGTCCATATTTGGACT  799
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGGGGGGATGTAGACATGCTAAGGACAGAGGTCCATATTTGGACT  800

seq1  ATTCTGAAACTGTTCTCCATCTTTACTTTGACGATTGAACCATCTCATGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAAACTGTTCTCCATCTTTACTTTGACGATTGAACCATCTCATGA  850

seq1  TAGCTTGCAGTTTGGCTAGGCTGAGATTCTGCTGTCTAACCCAGTACTAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTGCAGTTTGGCTAGGCTGAGATTCTGCTGTCTAACCCAGTACTAG  900

seq1  CATTATAGTTACAGACACAGTTACAGACATGGCTTTTTGCATAGTGCTAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATAGTTACAGACACAGTTACAGACATGGCTTTTTGCATAGTGCTAG  950

seq1  CTATAATATCAGGGGTTTGTTGTTGTTGTTGTTGTTTGTTGGCTTGTTTG  999
      ||||||||||||||||||||||    |||   |||||| ||||     ||
seq2  CTATAATATCAGGGGTTTGTTG----TGTGTGTGTTTG-TGGC-----TG  990

seq1  TTTGTTTGTTTTATTTTATTTTGGTTTTT  1028
      ||||||  | ||||||   ||||||||||
seq2  TTTGTTGTTGTTATTT--ATTTGGTTTTT  1017


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