BAC Information

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BAC

Clone NameB6Ng01-245M09
Chromosome1 (Build37)
Map Location 118,392,227 - 118,393,372
singlet/doubletsinglet
Overlap geneCntnap5a
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245M09.bB6Ng01-245M09.g
ACCGA054570GA054571
length1,1371,001
definitionB6Ng01-245M09.b B6Ng01-245M09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaccaagtgtgtttttgattcataatttttccttaaaacataaac
aaataaaagccattggtttcttcctaatataaactcaccactccagcatt
tcatctgtttgaaagtttcttatcaaggcacagaagtttaaacttgagat
gtatattaagtctttgagagttctgctagggtactgcctgcccagcaaac
tgtgcatactcagttgacagtggttgctaatgagacatctccaggcatcc
atttctgtgttcagtactgtacttgtttcagatccctgtggtgtgaaagg
aacccttaaaagtgatgatattagcagagatgtggtcacaatcattatta
acaatgacaaaagtaatgacacaaaggaacatcatgatgtttgatgacga
tggggatgaagaagacagtgatgattatgatgtaatgatagtgatgaagc
cagtacagtgtttatgctggaatcttcttccattcctgagcatgtagctt
cagagagtgtgaaaaacaataatcaaaatgataactgcaatgcaacttaa
catgccttgatgttgtgttccatgtatacaaagtatttcagttagtttta
tttggcataattttatgaacaatatattaaatgtttcatctagaccataa
tatactaagatgcttatgtgattggccagggccatctagacaatatactg
aggccctgaaatgtgatgcaacctgattatctgaagccagtgctcttctt
gactctcagaaaaagcttgttgataaaagaggtgtgtgggctcaagaaat
gaatcagaacaacattctttggagctctacagtgattctgctattaaaga
agtgtagggtgtcttaggaaagaacatgggtttttgatctcatatattat
agctagactatttgatgatttaggatgaactaacctgaagttgaccttga
agaatgagtttagtgcaatgtcatatgattgaaaatgtagtcacctgtcc
atagcagcttctggttcatggttcttagatagcaattttgttctctcaaa
tctatcgtatatctactctcatatttctttctagtttttttctttttagc
aataatatattgtatgcaaaatatggctgttcctatc

gaattcaataaaaagaatagaaagttaatgaagaagaggacatgaaattg
gtggggtgagggctgtgtgtatccagagcagcttgtgaacataattatgt
atagatatgacttatttcactgtatatatgtatgaaatgatcaaaattaa
aaaggtatatgatctttatgtagggaacaagtaaagttgtagcacatgct
tattgttgaacatagggaaaaaaacccacaggaaccaatgcctcagtcca
acgggagttaaaaagcttttccaggtttggctcagtgggatagcaaagcc
ttcctcaatcctaagagtaaagcttttcttgggtgtgtgtgcatctgttg
gtactatgtgcaaacaagttccagtataggttttcctctccagatgttta
taccctgaagattgttctttgcatttaatctgttttattattttatttat
tgacatatcaaatgctatcccctttcctcgtttcccctccaaaacccccc
tccccctgttcaccaacccactcattcccccttcgtggccctgacatttc
cttcacaatggggcatagagccttcacaggagcaagggcatctcctccca
ttgaagacctactaagtcatcctctgctacatatgcagatggagccttga
gtcccaccatgtatactctttggttggtggtttagtccctgggagctctg
gggatagtggttaattcatattgttgttcctcctatggggctgctaaccc
ttaagctacttgggtcctttctctagccccttcattggggaccctgtgct
cagttcaatggttgactgagagcatcccacctctgtattttgttcaggcc
atggcagagcctctcaagaaacagctatatcaggcagctgtcagcaaaca
attttattagcatctacagtggtgtctgggtttgatggttgtttatggta
tggatcccagtggtgcaaactctggatgggcattcctttagactctgcta
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_118392227_118393372
seq2: B6Ng01-245M09.b_43_1179

seq1  GAATTCACCAAGTGTGTTTTTGATTCATAATTTTTCCTTAAAACATAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAAGTGTGTTTTTGATTCATAATTTTTCCTTAAAACATAAAC  50

seq1  AAATAAAAGCCATTGGTTTCTTCCTAATATAAACTCACCACTCCAGCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAGCCATTGGTTTCTTCCTAATATAAACTCACCACTCCAGCATT  100

seq1  TCATCTGTTTGAAAGTTTCTTATCAAGGCACAGAAGTTTAAACTTGAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGTTTGAAAGTTTCTTATCAAGGCACAGAAGTTTAAACTTGAGAT  150

seq1  GTATATTAAGTCTTTGAGAGTTCTGCTAGGGTACTGCCTGCCCAGCAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTAAGTCTTTGAGAGTTCTGCTAGGGTACTGCCTGCCCAGCAAAC  200

seq1  TGTGCATACTCAGTTGACAGTGGTTGCTAATGAGACATCTCCAGGCATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATACTCAGTTGACAGTGGTTGCTAATGAGACATCTCCAGGCATCC  250

seq1  ATTTCTGTGTTCAGTACTGTACTTGTTTCAGATCCCTGTGGTGTGAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGTGTTCAGTACTGTACTTGTTTCAGATCCCTGTGGTGTGAAAGG  300

seq1  AACCCTTAAAAGTGATGATATTAGCAGAGATGTGGTCACAATCATTATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTAAAAGTGATGATATTAGCAGAGATGTGGTCACAATCATTATTA  350

seq1  ACAATGACAAAAGTAATGACACAAAGGAACATCATGATGTTTGATGACGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGACAAAAGTAATGACACAAAGGAACATCATGATGTTTGATGACGA  400

seq1  TGGGGATGAAGAAGACAGTGATGATTATGATGTAATGATAGTGATGAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGATGAAGAAGACAGTGATGATTATGATGTAATGATAGTGATGAAGC  450

seq1  CAGTACAGTGTTTATGCTGGAATCTTCTTCCATTCCTGAGCATGTAGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACAGTGTTTATGCTGGAATCTTCTTCCATTCCTGAGCATGTAGCTT  500

seq1  CAGAGAGTGTGAAAAACAATAATCAAAATGATAACTGCAATGCAACTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGTGTGAAAAACAATAATCAAAATGATAACTGCAATGCAACTTAA  550

seq1  CATGCCTTGATGTTGTGTTCCATGTATACAAAGTATTTCAGTTAGTTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTTGATGTTGTGTTCCATGTATACAAAGTATTTCAGTTAGTTTTA  600

seq1  TTTGGCATAATTTTATGAACAATATATTAAATGTTTCATCTAGACCATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCATAATTTTATGAACAATATATTAAATGTTTCATCTAGACCATAA  650

seq1  TATACTAAGATGCTTATGTGATTGGCCAGGGCCATCTAGACAATATACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTAAGATGCTTATGTGATTGGCCAGGGCCATCTAGACAATATACTG  700

seq1  AGGCCCTGAAATGTGATGCAACCTGATTATCTGAAGCCAGTGCTCTTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTGAAATGTGATGCAACCTGATTATCTGAAGCCAGTGCTCTTCTT  750

seq1  GACTCTCAGAAAAAGCTTGTTGATAAAAGAGGTGTGTGGGCTCAAGAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTCAGAAAAAGCTTGTTGATAAAAGAGGTGTGTGGGCTCAAGAAAT  800

seq1  GAATCAGAACAACATTCTTTGGAGCTCTACAGTGATTCTGCTATTAAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGAACAACATTCTTTGGAGCTCTACAGTGATTCTGCTATTAAAGA  850

seq1  AGTGTAGGGTGTCTTAGGAAAGAACAT-GGTTTTTGATCTCATATATTAT  899
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGTGTAGGGTGTCTTAGGAAAGAACATGGGTTTTTGATCTCATATATTAT  900

seq1  AGCTAGACTATTTGATGATTTAGGATGAACTAACCTGAAGTTGACCTTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGACTATTTGATGATTTAGGATGAACTAACCTGAAGTTGACCTTGA  950

seq1  AGAATGAGTTTAGTGCAATGTCATATGAATTGAAAATGTAGTCACCTGTC  999
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGAATGAGTTTAGTGCAATGTCATATG-ATTGAAAATGTAGTCACCTGTC  999

seq1  CATAGCAGCTTCTGGTTCATGGTTCTTAGATTAGCAATTTTGTTCTCTCC  1049
      |||||||||||||||||||||||||||||| |||||||||||||||||| 
seq2  CATAGCAGCTTCTGGTTCATGGTTCTTAGA-TAGCAATTTTGTTCTCTC-  1047

seq1  AAAATCCTATCCTATATTCTACTCTCATATTTCTTTCTAG-TTTTTTCTT  1098
       |||| ||||| |||| ||||||||||||||||||||||| |||||||||
seq2  -AAAT-CTATCGTATA-TCTACTCTCATATTTCTTTCTAGTTTTTTTCTT  1094

seq1  TTTAGCAAATAATAATATTGTATGGAAAATATGGTTGTTTTCCCTATC  1146
      |||||| |||||| |||||||||| ||||||||| ||||   ||||||
seq2  TTTAGC-AATAAT-ATATTGTATGCAAAATATGGCTGTT---CCTATC  1137


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