BAC Information

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BAC

Clone NameB6Ng01-246A02
Chromosome1 (Build37)
Map Location 28,451,226 - 28,625,997
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040952, EG433281
Downstream geneEG665903, Gm597, LOC435614, EG623924, EG433283
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246A02.bB6Ng01-246A02.g
ACCGA054742GA054743
length3921,121
definitionB6Ng01-246A02.b B6Ng01-246A02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,451,226 - 28,451,623)(28,624,878 - 28,625,997)
sequence
tttaggtaatctaaaatagtgtatatttctgttgaggccagccagccctc
acatgtctgggttcgagcctggaaggcatcttggaatctggaagaaaaga
gaaaatctaagcggcaagagaaaggatggagctaagacaagattctgatc
aaagctctattttaatattcggaaacacagttttataaagaagggggagg
ggcccattcccaccaaatcatcttcagagtccagctgcaggtgaccatgt
gtatactctggaacagctaggcgacaagtagcagcagtgggagtggcaga
atgatagggtggtaggctctgcccccagtgatctcctagtgataacaggc
aagcctgttcagcctgatttctggctgtggggggagggggag

gaattcagtgtaatttttttttaatttttgaagggatagagatactttcc
tgggctattttctggaatataaaataaaagaataaaacttccatgttgaa
gtgtttggcaatttccaccatcatcttttaaagacatttaagcacattat
aaaagatgaagggagacataaaagtacaataatcactatgtgtattctta
gctgaaatgaatgtaatagcggcatggctatataattaccttgaaatatt
ctcttctgaatagattttacaagaattactgagagaaatgacttgtatct
tagcataataccatcggcaggctattctctaagatggttttgcgtttgat
tcactcttaggaatggatacttttgggccttccataattatcctcttatc
atgagatgaaacaccacactgcacagaaattcaagctgaatttactctaa
taatatatcaaaatgcagtctaattactaatacaactagaaaaattatat
ttccttcattagtaagagccacaagtaataaataaaaatacagatggcag
tatagaatccatttgtatgtttaagacactctatgtttgaaaatgaagag
taatgttccctcatgagatgtaggggtcattatcatggagacttgactat
cagtttacaaatgaaatatatacatagaactttattcttcttcctttaac
taagaaactataagtgattctttgttcaaacctgacaccccaaaatgacc
cagagcctatgatttcctgtcccttggttctcaaccttcatcatactgtg
atcatttaatagttcctcatgttgtgctaatcaccagccataaaatggat
tttattgctactccataactgtagttttgctgctgttaagaattacaaat
ttaatatctgatattcaggatatctgatatataacctgttttaaaaggtc
atttgaccccctcccccaaagcaccatgacccagagactgagaaccacag
ctctggacctttacttcatcagcaaggttttgtgcatttgtcatgaaaat
aggttacaaagtttatgttattattagcttcacatttgggtccccccacc
tgtctttcatcctacctcctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_28451226_28451623
seq2: B6Ng01-246A02.b_45_442

seq1  GAATTCTTTAGGTAATCTAAAATAGTGTATATTTCTGTTGAGGCCAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGGTAATCTAAAATAGTGTATATTTCTGTTGAGGCCAGCCA  50

seq1  GCCCTCACATGTCTGGGTTCGAGCCTGGAAGGCATCTTGGAATCTGGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCACATGTCTGGGTTCGAGCCTGGAAGGCATCTTGGAATCTGGAAG  100

seq1  AAAAGAGAAAATCTAAGCGGCAAGAGAAAGGATGGAGCTAAGACAAGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGAAAATCTAAGCGGCAAGAGAAAGGATGGAGCTAAGACAAGATT  150

seq1  CTGATCAAAGCTCTATTTTAATATTCGGAAACACAGTTTTATAAAGAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCAAAGCTCTATTTTAATATTCGGAAACACAGTTTTATAAAGAAGG  200

seq1  GGGAGGGGCCCATTCCCACCAAATCATCTTCAGAGTCCAGCTGCAGGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGGCCCATTCCCACCAAATCATCTTCAGAGTCCAGCTGCAGGTGA  250

seq1  CCATGTGTATACTCTGGAACAGCTAGGCGACAAGTAGCAGCAGTGGGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGTATACTCTGGAACAGCTAGGCGACAAGTAGCAGCAGTGGGAGT  300

seq1  GGCAGAATGATAGGGTGGTAGGCTCTGCCCCCAGTGATCTCCTAGTGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAATGATAGGGTGGTAGGCTCTGCCCCCAGTGATCTCCTAGTGATA  350

seq1  ACAGGCAAGCCTGTTCAGCCTGATTTCTGGCTGTGGGGGGAGGGGGAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAAGCCTGTTCAGCCTGATTTCTGGCTGTGGGGGGAGGGGGAG  398


seq1: chr1_28624878_28625997
seq2: B6Ng01-246A02.g_65_1185 (reverse)

seq1  GAGGAGGTAGGATG-AAGACAGGT-GGGGGACAC-ATTGTGAAGCTAATA  47
      |||||||||||||| ||||||||| ||||||| | | |||||||||||||
seq2  GAGGAGGTAGGATGAAAGACAGGTGGGGGGACCCAAATGTGAAGCTAATA  50

seq1  ATAACATAAAACTTGTAACCTATTTTCATGACAAATTGCACAAAACC-TG  96
      ||||||||||  ||||||||||||||||||||||| ||||||||||| ||
seq2  ATAACATAAACTTTGTAACCTATTTTCATGACAAA-TGCACAAAACCTTG  99

seq1  CTGATGGAGTAAAGGTTCAGAGCTGTGGTTCTCAGTCTCTGGGTCATGGT  146
      |||||| ||||||||| |||||||||||||||||||||||||||||||||
seq2  CTGATGAAGTAAAGGTCCAGAGCTGTGGTTCTCAGTCTCTGGGTCATGGT  149

seq1  GCCTTTTGGGGGAGGGGGTCAAATGACCTTTTAAAACAGGTTATATATCA  196
      ||  ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GC--TTTGGGGGAGGGGGTCAAATGACCTTTTAAAACAGGTTATATATCA  197

seq1  GATATCCTGAATATCAGATATTAAATTTGTAATTCTTAACAGCAGCAAAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCCTGAATATCAGATATTAAATTTGTAATTCTTAACAGCAGCAAAA  247

seq1  CTACAGTTATGGAGTAGCAATAAAATCCATTTTATGGCTGGTGATTAGCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTTATGGAGTAGCAATAAAATCCATTTTATGGCTGGTGATTAGCA  297

seq1  CAACATGAGGAACTATTAAATGATCACAGTATGATGAAGGTTGAGAACCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGAGGAACTATTAAATGATCACAGTATGATGAAGGTTGAGAACCA  347

seq1  AGGGACAGGAAATCATAGGCTCTGGGTCATTTTGGGGTGTCAGGTTTGAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACAGGAAATCATAGGCTCTGGGTCATTTTGGGGTGTCAGGTTTGAA  397

seq1  CAAAGAATCACTTATAGTTTCTTAGTTAAAGGAAGAAGAATAAAGTTCTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAATCACTTATAGTTTCTTAGTTAAAGGAAGAAGAATAAAGTTCTA  447

seq1  TGTATATATTTCATTTGTAAACTGATAGTCAAGTCTCCATGATAATGACC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATATTTCATTTGTAAACTGATAGTCAAGTCTCCATGATAATGACC  497

seq1  CCTACATCTCATGAGGGAACATTACTCTTCATTTTCAAACATAGAGTGTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACATCTCATGAGGGAACATTACTCTTCATTTTCAAACATAGAGTGTC  547

seq1  TTAAACATACAAATGGATTCTATACTGCCATCTGTATTTTTATTTATTAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACATACAAATGGATTCTATACTGCCATCTGTATTTTTATTTATTAC  597

seq1  TTGTGGCTCTTACTAATGAAGGAAATATAATTTTTCTAGTTGTATTAGTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGCTCTTACTAATGAAGGAAATATAATTTTTCTAGTTGTATTAGTA  647

seq1  ATTAGACTGCATTTTGATATATTATTAGAGTAAATTCAGCTTGAATTTCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGACTGCATTTTGATATATTATTAGAGTAAATTCAGCTTGAATTTCT  697

seq1  GTGCAGTGTGGTGTTTCATCTCATGATAAGAGGATAATTATGGAAGGCCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGTGTGGTGTTTCATCTCATGATAAGAGGATAATTATGGAAGGCCC  747

seq1  AAAAGTATCCATTCCTAAGAGTGAATCAAACGCAAAACCATCTTAGAGAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTATCCATTCCTAAGAGTGAATCAAACGCAAAACCATCTTAGAGAA  797

seq1  TAGCCTGCCGATGGTATTATGCTAAGATACAAGTCATTTCTCTCAGTAAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTGCCGATGGTATTATGCTAAGATACAAGTCATTTCTCTCAGTAAT  847

seq1  TCTTGTAAAATCTATTCAGAAGAGAATATTTCAAGGTAATTATATAGCCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTAAAATCTATTCAGAAGAGAATATTTCAAGGTAATTATATAGCCA  897

seq1  TGCCGCTATTACATTCATTTCAGCTAAGAATACACATAGTGATTATTGTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGCTATTACATTCATTTCAGCTAAGAATACACATAGTGATTATTGTA  947

seq1  CTTTTATGTCTCCCTTCATCTTTTATAATGTGCTTAAATGTCTTTAAAAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATGTCTCCCTTCATCTTTTATAATGTGCTTAAATGTCTTTAAAAG  997

seq1  ATGATGGTGGAAATTGCCAAACACTTCAACATGGAAGTTTTATTCTTTTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGTGGAAATTGCCAAACACTTCAACATGGAAGTTTTATTCTTTTA  1047

seq1  TTTTATATTCCAGAAAATAGCCCAGGAAAGTATCTCTATCCCTTCAAAAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATTCCAGAAAATAGCCCAGGAAAGTATCTCTATCCCTTCAAAAA  1097

seq1  TTAAAAAAAAATTACACTGAATTC  1120
      ||||||||||||||||||||||||
seq2  TTAAAAAAAAATTACACTGAATTC  1121


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