BAC Information

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BAC

Clone NameB6Ng01-248A17
Chromosome3 (Build37)1 (Build37)
Map Location 123,611,745 - 123,612,90298,305,051 - 98,305,405
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1810037I17Rik, Usp53, Myoz2, Synpo2, Sec24d, G430022H21Rik, Prss12, EG668804, Ndst3
Downstream geneLOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248A17.bB6Ng01-248A17.g
ACCGA056219GA056220
length1,154544
definitionB6Ng01-248A17.b B6Ng01-248A17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(123,611,745 - 123,612,902)(98,305,051 - 98,305,405)
sequence
gaattccagcatcatgttatttccttaatagatgctctaaaattcactgg
taccaatgattagttctgtgtagtaaagacattatgggagtttgtggaaa
ttcatactctatctagagttttattacattgaaagaacttggactcatca
ttttctgaaaaccatgaggaaggcaaagaaaaagaagatggagcaccagt
atccccgtaactgtcgccttatagaatgccagggtcatgatgaaaatgta
gtaaacaagaacacaaatggctgaagaaactcttttaaatccaattgcta
cctggcatcacaaacaaccaaccagccaaacaaaggaacaaaaaaccaaa
tttcttaagttctgggttctcaagttatatgttgatgatgaatttctggc
aacatacatcttttgtttcaaaacaaaagtttggacaaaaaatagacaaa
ttgttgacacgaaccactttatataattttaggcaatggaagcctgtcta
cggctattgatgcatttgctggctttctttgcagtctccacactaatgca
accttagtttagctagatgtgaaatagtttttttttgtccacaaaccgtg
tacatgtatttgagttggttatatgcaaatagcttagaaatttatcattt
taaaaatggatttctttattcttgacaactttatgtatgtttcatacaat
gaaatatgatcacatctatatcaatttacccttccaatctctctcagacc
tgcaagcacatcctgcttccgacttcatctcttctctctcttacccttcc
tccttttctttttcttcttaatatcacacagagtccaaatagtagttccc
acatgtgaatagtcatggtaccatctattggagtctggtaaacctaccaa
tgtctatacatcaaaatgagtgatcatttcctcactcagcaactattaac
tgctaacagctcttcagtaaggcctggggactagagagtagctgcccttg
tttgctggatgttgacatgtttgattcttgcacaggtagtgtgtgtaaat
aacacagctctgtgagttagagcgtgattttgtgttcaagccaggagacc
acatttattggtcaagtcagcctgtagctctacatgccttgccatctcct
cttt

cttcacaggcgatgttgagagaaaggtattgcgaaatggaaaatcatttg
tgcaatagactttcaggttatctgtaactattagtaactttatgtcctta
aaagattatgaaaggatggaccatctagagactgccatacccaggaatcc
atcccataattagcctccaaacactgacaccattgcatacgccagcaaga
ttttgctgaaaggacccagatatagctatctcttgtgaggctatgccggg
gcctagcaaacacagaagtggatgctcacagtcagctattggatggatca
cagggcccccaatggaggagctagagaaagtacccaaggagctaaagggg
tctgcaaccctatagatggaacaacaatatgaactaaccagtacccccca
gagctcgtgtctctagctgcatatgtatcagaagatggcctagttggcca
tcattggaaagagaggcccatcagttttgcaaactttatatgcctcagta
caggggaatgccagggccaagaagtgggagtgggtgagtagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_123611745_123612902
seq2: B6Ng01-248A17.b_44_1197

seq1  GAATTCCAGCATCATGTTATTTCCTTAATAGATGCTCTAAAATTCACTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCATCATGTTATTTCCTTAATAGATGCTCTAAAATTCACTGG  50

seq1  TACCAATGATTAGTTCTGTGTAGTAAAGACATTATGGGAGTTTGTGGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAATGATTAGTTCTGTGTAGTAAAGACATTATGGGAGTTTGTGGAAA  100

seq1  TTCATACTCTATCTAGAGTTTTATTACATTGAAAGAACTTGGACTCATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACTCTATCTAGAGTTTTATTACATTGAAAGAACTTGGACTCATCA  150

seq1  TTTTCTGAAAACCATGAGGAAGGCAAAGAAAAAGAAGATGGAGCACCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGAAAACCATGAGGAAGGCAAAGAAAAAGAAGATGGAGCACCAGT  200

seq1  ATCCCCGTAACTGTCGCCTTATAGAATGCCAGGGTCATGATGAAAATGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCGTAACTGTCGCCTTATAGAATGCCAGGGTCATGATGAAAATGTA  250

seq1  GTAAACAAGAACACAAATGGCTGAAGAAACTCTTTTAAATCCAATTGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACAAGAACACAAATGGCTGAAGAAACTCTTTTAAATCCAATTGCTA  300

seq1  CCTGGCATCACAAACAACCAACCAGCCAAACAAAGGAACAAAAAACCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCATCACAAACAACCAACCAGCCAAACAAAGGAACAAAAAACCAAA  350

seq1  TTTCTTAAGTTCTGGGTTCTCAAGTTATATGTTGATGATGAATTTCTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAAGTTCTGGGTTCTCAAGTTATATGTTGATGATGAATTTCTGGC  400

seq1  AACATACATCTTTTGTTTCAAAACAAAAGTTTGGACAAAAAATAGACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATACATCTTTTGTTTCAAAACAAAAGTTTGGACAAAAAATAGACAAA  450

seq1  TTGTTGACACGAACCACTTTATATAATTTTAGGCAATGGAAGCCTGTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGACACGAACCACTTTATATAATTTTAGGCAATGGAAGCCTGTCTA  500

seq1  CGGCTATTGATGCATTTGCTGGCTTTCTTTGCAGTCTCCACACTAATGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTATTGATGCATTTGCTGGCTTTCTTTGCAGTCTCCACACTAATGCA  550

seq1  ACCTTAGTTTAGCTAGATGTGAAATAGTTTTTTTTTGTCCACAAACCGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAGTTTAGCTAGATGTGAAATAGTTTTTTTTTGTCCACAAACCGTG  600

seq1  TACATGTATTTGAGTTGGTTATATGCAAATAGCTTAGAAATTTATCATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTATTTGAGTTGGTTATATGCAAATAGCTTAGAAATTTATCATTT  650

seq1  TAAAAATGGATTTCTTTATTCTTGACAACTTTATGTATGTTTCATACAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGGATTTCTTTATTCTTGACAACTTTATGTATGTTTCATACAAT  700

seq1  GAAATATGATCACATCTATATCAATTTACCCTTCCAATCTCTCTCAGACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATGATCACATCTATATCAATTTACCCTTCCAATCTCTCTCAGACC  750

seq1  TGCAAGCACATCCTGCTTCCGACTTCATCTCTTCTCTCTCTTACCCTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGCACATCCTGCTTCCGACTTCATCTCTTCTCTCTCTTACCCTTCC  800

seq1  TCCTTTTCTTTTTCTTCTTAATATCACACAGAGTCCAAATAGTAGTTCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTCTTTTTCTTCTTAATATCACACAGAGTCCAAATAGTAGTTCCC  850

seq1  ACATGTGAATAGTCATGGTACCATCTATTGGAGTCTGGTAAACCTACCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGAATAGTCATGGTACCATCTATTGGAGTCTGGTAAACCTACCAA  900

seq1  TGTCTATAACATCAAAATGAGTGATCATTTCCTCACTCAGCAACTATTAA  950
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAT-ACATCAAAATGAGTGATCATTTCCTCACTCAGCAACTATTAA  949

seq1  CTGCTAACAGCTCTTCAGTAAGGCCTGGGGACTAGAGAGTAGCTGCCCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAACAGCTCTTCAGTAAGGCCTGGGGACTAGAGAGTAGCTGCCCTT  999

seq1  GTTTGCTGGAATGTTGACATGTTTGA-TCTTGCACAGGTAGTGTGTGTAA  1049
      ||||||||| |||||||||||||||| |||||||||||||||||||||||
seq2  GTTTGCTGG-ATGTTGACATGTTTGATTCTTGCACAGGTAGTGTGTGTAA  1048

seq1  ATAACCACAGCTCTTGTGAGTTTAAGAGCGTGA-TTTGTG-TCAAGCCCA  1097
      |||| |||||||| ||||||||  ||||||||| |||||| ||||| |||
seq2  ATAA-CACAGCTC-TGTGAGTT--AGAGCGTGATTTTGTGTTCAAG-CCA  1093

seq1  GAAGACAACCATTTATT-GTCCAGTCAGCCTGTGGCTCTTACATG-CTTG  1145
      | |||| | |||||||| ||| ||||||||||| |||| |||||| ||||
seq2  GGAGACCA-CATTTATTGGTCAAGTCAGCCTGTAGCTC-TACATGCCTTG  1141

seq1  CCATCTCCTCTTT  1158
      |||||||||||||
seq2  CCATCTCCTCTTT  1154


seq1: chr1_98305051_98305405
seq2: B6Ng01-248A17.g_264_613

seq1  GCAAGATTTTGCTGAAAGGACCCAGATGTAGCTGTCTCTTGTGAGGCTAT  50
      ||||||||||||||||||||||||||| ||||| ||||||||||||||||
seq2  GCAAGATTTTGCTGAAAGGACCCAGATATAGCTATCTCTTGTGAGGCTAT  50

seq1  TCTTGGGCCTAGCAAACACAGAAGTGGATGCTCACAGCCAGCTATTGGAT  100
       |  ||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTATTGGAT  100

seq1  GAATCACAGAGCCCCCAGTGGAGGAGCTAGAGAAAGTATCCAAGGAGCTA  150
      | ||||||| ||||||| |||||||||||||||||||| |||||||||||
seq2  GGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTA  150

seq1  AAGGGGTCTGCAACCCTATAGGTGGAACAACAATATGAACTAACCAGTAC  200
      ||||||||||||||||||||| ||||||||||||||||||||||||||| 
seq2  AAGGGGTCTGCAACCCTATAGATGGAACAACAATATGAACTAACCAGTA-  199

seq1  CACCTCCCCCCAGAGCTCATGTCTCTAGCTGCATACGTATCAGAAGATGG  250
           ||||||||||||| |||||||||||||||| ||||||||||||||
seq2  -----CCCCCCAGAGCTCGTGTCTCTAGCTGCATATGTATCAGAAGATGG  244

seq1  CCTAGTTGGCCATCAGTGGAAAGAGAGGCCCAT-TGGTTGGCAAACTTTA  299
      ||||||||||||||| |||||||||||||||||  | || ||||||||||
seq2  CCTAGTTGGCCATCATTGGAAAGAGAGGCCCATCAGTTTTGCAAACTTTA  294

seq1  TATGCTTAAGTACAGGGAAACGCCAGGGCTAAGAAGTGCCAGTGGGTGGG  349
      ||||| | ||||||||| || |||||||| ||||||||  |||||||| |
seq2  TATGCCTCAGTACAGGGGAATGCCAGGGCCAAGAAGTGGGAGTGGGTGAG  344

seq1  TAGGGG  355
      ||||||
seq2  TAGGGG  350


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