BAC Information

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BAC

Clone NameB6Ng01-248C04
Chromosome1 (Build37)
Map Location 48,907,812 - 49,042,263
singlet/doubletdoublet
Overlap geneLOC666909
Upstream geneLOC546734, LOC674566, LOC100041936, LOC666903
Downstream gene2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248C04.bB6Ng01-248C04.g
ACCGA056288GA056289
length8851,164
definitionB6Ng01-248C04.b B6Ng01-248C04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,041,379 - 49,042,263)(48,907,812 - 48,908,963)
sequence
gaattcaaaagtatttgcagtcaggattggtatgtacccttgatgccttg
gttacaggctcagtgtgattcctactgcatttcagttctccaaatctttg
ttacatttgcatgtattacttttacacatatacttcatggtggagaatac
aacttgggctcatgcttacactctcatatctcaatgtatttttttccctt
ccaaaataactcaaagagtcatgtgcttacataagttgtcctgcacgttg
catattatcagagcaacagaaatcaaagtagtatggttttgtatttatta
ttcagtatacaaactgagtctaaagaacaattaagtacatacaaaaccaa
tgttacatgaactaggtagattaatttctgcatacatacaggtaacaata
ataataaaaagagaagaattaggggaaatttgaaagggtgagctggaaag
tgggaatgatgtagaggtggtggatcatgcagaggtgttaatcctaaaga
attagaaaatgtgacaatttcaagccacccaattaaaagaggaaacagta
ctatttgaaagcctgagatcttaacaactgtgaggtaattaatgatgact
ggccgactctgacattgaaattctgcattgtttatgtaaattttgtagga
gtttttgttactattacatatctaattatgatgaactggaaagatgctgg
acaaacagaaatgtacacagtaataaggctatttgtgaaaagtcagagat
cataaagatcatacaaaataacttagaacatcacccattaaattttcttt
cttttttttttctttttttttttaattaggtattttcctcgtttacattt
tcaatgctatcccaaaggtcccccatacccacccc

gaattctccactctctgacataacagttgctgagcacaattaggcttgtg
gtgaacatcacaccaaaatgctgcttccacttatttcctaagtaaatatc
aattggtatagtatttatggcatgattctttttctaatctttagagtatg
acttgtcagtatcatctgtaccatcttctctagggaggaattcttctcag
tagagactgaataatgtaaaatgtttgtgataccagaggtttatcataat
gaattccagtggggatttatatagaggcaaatacaaagtgactgggaagt
caattccaacgtgtttgtcatgtgggataaattcattcttttctcctccc
actcagtatgtttatccacccactacatgtttttacaacagtaaactgaa
taacagccttgcaatgtttcatttttaggaagaggctcattttaagaaga
aagaatcttgaaataacatatcaccaattatccaagtaaaatatagtatt
ttcttgatttcaaacttgatcttttattactctgtacaacatatatgtct
ataaatctttttgattcctcaagacctaacaaccaactccataataatcc
cggcacatataagtctaacactgtataatcagttaaccagtactgttaag
ataaaccgatttaatcaccctatctttaagaaaaagagcaacaaaatact
aactcacttccattaaaagttacttatgcccctcaaagttaaaaagacac
tttcaaagctgattatactttttccactatagctttattctttgtcttgt
gtttttccttcttgttttgttatctctctgccacatctcataatttgatg
atgctttctttctaccactgctttacatttttaattacatgctacttttc
tagtaagcttcatacacgggagacaggggatctataaaaactgggtttca
gtattaacagcttatgctttacaattattttgtgtaggattggagtcttc
caggcttttccatagtctcagttctctttatatgtctattgtctctttgc
tcagctctttttagccagtcatgctactgagcttttccttttatcaagtt
ataggcttctaaaggtttctagagaataccatcggcaagaaaacctcctg
atcctttcaatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_49041379_49042263
seq2: B6Ng01-248C04.b_43_927 (reverse)

seq1  GGGGTGGGTATGGGGGACCTTTGGGATAGCATTGAAAATGTAAACGAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGGTATGGGGGACCTTTGGGATAGCATTGAAAATGTAAACGAGGA  50

seq1  AAATACCTAATT-AAAAAAAAAAGAAAAAAAAAAGAAAGAAAAATTTAAT  99
      |||||||||||| |||||||||||||||||||||||||| ||||||||||
seq2  AAATACCTAATTAAAAAAAAAAAGAAAAAAAAAAGAAAG-AAAATTTAAT  99

seq1  GGGTGATGTTCTAAGTTATTTTGTATGATCTTTATGATCTCTGACTTTTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGATGTTCTAAGTTATTTTGTATGATCTTTATGATCTCTGACTTTTC  149

seq1  ACAAATAGCCTTATTACTGTGTACATTTCTGTTTGTCCAGCATCTTTCCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAGCCTTATTACTGTGTACATTTCTGTTTGTCCAGCATCTTTCCA  199

seq1  GTTCATCATAATTAGATATGTAATAGTAACAAAAACTCCTACAAAATTTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATCATAATTAGATATGTAATAGTAACAAAAACTCCTACAAAATTTA  249

seq1  CATAAACAATGCAGAATTTCAATGTCAGAGTCGGCCAGTCATCATTAATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACAATGCAGAATTTCAATGTCAGAGTCGGCCAGTCATCATTAATT  299

seq1  ACCTCACAGTTGTTAAGATCTCAGGCTTTCAAATAGTACTGTTTCCTCTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCACAGTTGTTAAGATCTCAGGCTTTCAAATAGTACTGTTTCCTCTT  349

seq1  TTAATTGGGTGGCTTGAAATTGTCACATTTTCTAATTCTTTAGGATTAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGGGTGGCTTGAAATTGTCACATTTTCTAATTCTTTAGGATTAAC  399

seq1  ACCTCTGCATGATCCACCACCTCTACATCATTCCCACTTTCCAGCTCACC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGCATGATCCACCACCTCTACATCATTCCCACTTTCCAGCTCACC  449

seq1  CTTTCAAATTTCCCCTAATTCTTCTCTTTTTATTATTATTGTTACCTGTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAATTTCCCCTAATTCTTCTCTTTTTATTATTATTGTTACCTGTA  499

seq1  TGTATGCAGAAATTAATCTACCTAGTTCATGTAACATTGGTTTTGTATGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCAGAAATTAATCTACCTAGTTCATGTAACATTGGTTTTGTATGT  549

seq1  ACTTAATTGTTCTTTAGACTCAGTTTGTATACTGAATAATAAATACAAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATTGTTCTTTAGACTCAGTTTGTATACTGAATAATAAATACAAAA  599

seq1  CCATACTACTTTGATTTCTGTTGCTCTGATAATATGCAACGTGCAGGACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACTACTTTGATTTCTGTTGCTCTGATAATATGCAACGTGCAGGACA  649

seq1  ACTTATGTAAGCACATGACTCTTTGAGTTATTTTGGAAGGGAAAAAAATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGTAAGCACATGACTCTTTGAGTTATTTTGGAAGGGAAAAAAATA  699

seq1  CATTGAGATATGAGAGTGTAAGCATGAGCCCAAGTTGTATTCTCCACCAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGATATGAGAGTGTAAGCATGAGCCCAAGTTGTATTCTCCACCAT  749

seq1  GAAGTATATGTGTAAAAGTAATACATGCAAATGTAACAAAGATTTGGAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTATATGTGTAAAAGTAATACATGCAAATGTAACAAAGATTTGGAGA  799

seq1  ACTGAAATGCAGTAGGAATCACACTGAGCCTGTAACCAAGGCATCAAGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAATGCAGTAGGAATCACACTGAGCCTGTAACCAAGGCATCAAGGG  849

seq1  TACATACCAATCCTGACTGCAAATACTTTTGAATTC  885
      ||||||||||||||||||||||||||||||||||||
seq2  TACATACCAATCCTGACTGCAAATACTTTTGAATTC  885


seq1: chr1_48907812_48908963
seq2: B6Ng01-248C04.g_64_1227

seq1  GAATTCTCCACTCTCTGACATAACAGTTGCTGAGCACAATTAGGCTTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCACTCTCTGACATAACAGTTGCTGAGCACAATTAGGCTTGTG  50

seq1  GTGAACATCACACCAAAATGCTGCTTCCACTTATTTCCTAAGTAAATATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACATCACACCAAAATGCTGCTTCCACTTATTTCCTAAGTAAATATC  100

seq1  AATTGGTATAGTATTTATGGCATGATTCTTTTTCTAATCTTTAGAGTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGTATAGTATTTATGGCATGATTCTTTTTCTAATCTTTAGAGTATG  150

seq1  ACTTGTCAGTATCATCTGTACCATCTTCTCTAGGGAGGAATTCTTCTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTCAGTATCATCTGTACCATCTTCTCTAGGGAGGAATTCTTCTCAG  200

seq1  TAGAGACTGAATAATGTAAAATGTTTGTGATACCAGAGGTTTATCATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACTGAATAATGTAAAATGTTTGTGATACCAGAGGTTTATCATAAT  250

seq1  GAATTCCAGTGGGGATTTATATAGAGGCAAATACAAAGTGACTGGGAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGGGGATTTATATAGAGGCAAATACAAAGTGACTGGGAAGT  300

seq1  CAATTCCAACGTGTTTGTCATGTGGGATAAATTCATTCTTTTCTCCTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCCAACGTGTTTGTCATGTGGGATAAATTCATTCTTTTCTCCTCCC  350

seq1  ACTCAGTATGTTTATCCACCCACTACATGTTTTTACAACAGTAAACTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTATGTTTATCCACCCACTACATGTTTTTACAACAGTAAACTGAA  400

seq1  TAACAGCCTTGCAATGTTTCATTTTTAGGAAGAGGCTCATTTTAAGAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCCTTGCAATGTTTCATTTTTAGGAAGAGGCTCATTTTAAGAAGA  450

seq1  AAGAATCTTGAAATAACATATCACCAATTATCCAAGTAAAATATAGTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCTTGAAATAACATATCACCAATTATCCAAGTAAAATATAGTATT  500

seq1  TTCTTGATTTCAAACTTGATCTTTTATTACTCTGTACAACATATATGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGATTTCAAACTTGATCTTTTATTACTCTGTACAACATATATGTCT  550

seq1  ATAAATCTTTTTGATTCCTCAAGACCTAACAACCAACTCCATAATAATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCTTTTTGATTCCTCAAGACCTAACAACCAACTCCATAATAATCC  600

seq1  CGGCACATATAAGTCTAACACTGTATAATCAGTTAACCAGTACTGTTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCACATATAAGTCTAACACTGTATAATCAGTTAACCAGTACTGTTAAG  650

seq1  ATAAACCGATTTAATCACCCTATCTTTAAGAAAAAGAGCAACAAAATACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCGATTTAATCACCCTATCTTTAAGAAAAAGAGCAACAAAATACT  700

seq1  AACTCACTTCCATTAAAAGTTACTTATGCCCCTCAAAGTTAAAAAGACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACTTCCATTAAAAGTTACTTATGCCCCTCAAAGTTAAAAAGACAC  750

seq1  TTTCAAAGCTGATTATACTTTTTCCACTATAGCTTTATTCTTTGTCTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAGCTGATTATACTTTTTCCACTATAGCTTTATTCTTTGTCTTGT  800

seq1  GTTTTTCCTTCTTGTTTTGTTATCTCTCTGCCACATCTCATAATTTGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCCTTCTTGTTTTGTTATCTCTCTGCCACATCTCATAATTTGATG  850

seq1  ATGCTTTCTTTCTACCACTGCTTTACATTTTTAATTACATGCTACTTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTCTTTCTACCACTGCTTTACATTTTTAATTACATGCTACTTTTC  900

seq1  TAGTAAGCTTCATACAC-GGAGACAGGGGATCTAT-AAAACTGG--TTCA  946
      ||||||||||||||||| ||||||||||||||||| ||||||||  ||||
seq2  TAGTAAGCTTCATACACGGGAGACAGGGGATCTATAAAAACTGGGTTTCA  950

seq1  GTATTAACAGCTTATGC-TTACAATTA-TTTGTGTAAGATTGGAGTCTTC  994
      ||||||||||||||||| ||||||||| |||||||| |||||||||||||
seq2  GTATTAACAGCTTATGCTTTACAATTATTTTGTGTAGGATTGGAGTCTTC  1000

seq1  CAGGCTTTTCCATAGTCTCAGTTCTCTTTAATATGTCTATTGTTCTCTTT  1044
      ||||||||||||||||||||||||||||| |||||||||||| |||||||
seq2  CAGGCTTTTCCATAGTCTCAGTTCTCTTT-ATATGTCTATTG-TCTCTTT  1048

seq1  GCTCAGCTCTTTTTAAGCAGTCATGCTACTGAGGCTTTC--TTTATCA--  1090
      |||||||||||||||  ||||||||||||||||  ||||  |||||||  
seq2  GCTCAGCTCTTTTTAGCCAGTCATGCTACTGAGCTTTTCCTTTTATCAAG  1098

seq1  GTATA-GCTTCTAAA-GTTTCTAGGAGATACAATCG--CAGAAAACTCCC  1136
       |||| ||||||||| ||||||||   |||| ||||   |||||||  ||
seq2  TTATAGGCTTCTAAAGGTTTCTAGAGAATACCATCGGCAAGAAAACCTCC  1148

seq1  TGATCCTTTCATTTTT  1152
      ||||||||||| ||||
seq2  TGATCCTTTCAATTTT  1164


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