BAC Information

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BAC

Clone NameB6Ng01-250K12
Chromosome1 (Build37)
Map Location 115,327,796 - 115,328,960
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666635
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250K12.bB6Ng01-250K12.g
ACCGA058144GA058145
length1,2011,179
definitionB6Ng01-250K12.b B6Ng01-250K12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatgtggttattcgatt
ttctgaagtccaccttcctgagttctttatacatattggatgttagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtgatct
ttttgtcttattgacggtgtcttttgccttgcagaagctttgtagtttca
tgaggtcccatttgtcaatgctcaatcttacagcactagccattgctgtt
ctattcagtaatttttcccctgtgcccatatctttgaggcttttccccac
tttctcctctataagtttctgtgtctctgattttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataggaatggattgattcga
attcttctatatgataacaaccagttgtgccagcaccatttgttgaaaat
gctgtctttcttccactggatggttttagctcccctgtggaagatcaagt
gaccataggtgtgtgggttcatttctgggtctttaattctattccattcg
tctacttgtctgtcagtataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccaccagaggtacttt
tgtccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttacagattgctctttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagagagctattt
ttacaatgatgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagacttgaagtttttatcata
caaatctttcacttccttagttagagtcatgccaagatattttatattat
ttggtggctattgagagggtgttgtttccctaatttcttctcagcctgtt
attctttgtgtaggagacttgttgagtaatttatatccaagctatttcac
cgaagctgtttatcaggtttaggagtctctggtggaatttgagatcatta
taataccatcaatcatctgcagaagggtatatttgacttcccgttcgagt
tggatccattatctcatgtgtgtgccaattgctcgggccgcatgaccttc
a

gaattcctgtaagtggcaagaggataggtaaagtgccattcatgcctaag
gtgagagatgcatgactttataccaacagcattcaacctcttttggtaga
ggatggccaccaagaacccagaaaataggtcacttatccaattcacaaga
atccaccccagaaagagtgctgaagaaactttttgagaaaatgatgcttg
acagacttcatttctgggaagtaagccagaaatagccaggaagagagcca
gggcagatggagagaaacaattcagagtgacagcaacagtgaatggcaac
tggcaactgtaatgggtggtcagggtctaagccagatttttcaaggttct
tggtgtcttacctgagaatgaattaaaactccacacaaatttgtaaaagt
agaactattactttattcaatagctcagcagtaactcaccaaacactttc
catccaaaggctatgcaagattctacccaagattcctgttattgttttcc
attcctttcatgggattcaacagaaggaagtatttggttgataaggagaa
gagtttggatggttctatatattaacttacagttttcaatgtatataaat
atttctttatggaacttgtccattcccataattcttctgattttaatcac
atgtacacccaattgttcaaaggtataatgtggtaaatggtgaattctcc
ttaaaggctacacagttgccctattgtgcatgcacacaaaaccagtccca
ggccagatttgacccatcattcatttgtttcagggtttgacccaggattg
tctgaataatgataagatagtatctaagtttgctacagtagtgattcatt
tccattgtttaaaagcaagtgcagccttatacaagtggaagacaacgctg
aaaagtagctactaagtttcactgttaaaaaaatgcatgcattgtctata
ccaattggaagtcaaaagtttcctgctattccctatgcttgcatacctca
aaagacatcagaggaaaggaagacagaagagaattgtcccttaacactca
atgaaaatggagctgattccccaaactgctggcaatggtacaacatggaa
gaaatcacctaaggaaaaaggtgcaataaggtagaatccctcttaaatgg
cttggaatcattatttggccttctaactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_115327796_115328960
seq2: B6Ng01-250K12.g_70_1248

seq1  GAATTCCTGTAAGTGGCAAGAGGATAGGTAAAGTGCCATTCATGCCTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTAAGTGGCAAGAGGATAGGTAAAGTGCCATTCATGCCTAAG  50

seq1  GTGAGAGATGCATGACTTTATACCAACAGCATTCAACCTCTTTTGGTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGATGCATGACTTTATACCAACAGCATTCAACCTCTTTTGGTAGA  100

seq1  GGATGGCCACCAAGAACCCAGAAAATAGGTCACTTATCCAATTCACAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGCCACCAAGAACCCAGAAAATAGGTCACTTATCCAATTCACAAGA  150

seq1  ATCCACCCCAGAAAGAGTGCTGAAGAAACTTTTTGAGAAAATGATGCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCCCAGAAAGAGTGCTGAAGAAACTTTTTGAGAAAATGATGCTTG  200

seq1  ACAGACTTCATTTCTGGGAAGTAAGCCAGAAATAGCCAGGAAGAGAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTTCATTTCTGGGAAGTAAGCCAGAAATAGCCAGGAAGAGAGCCA  250

seq1  GGGCAGATGGAGAGAAACAATTCAGAGTGACAGCAACAGTGAATGGCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGATGGAGAGAAACAATTCAGAGTGACAGCAACAGTGAATGGCAAC  300

seq1  TGGCAACTGTAATGGGTGGTCAGGGTCTAAGCCAGATTTTTCAAGGTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAACTGTAATGGGTGGTCAGGGTCTAAGCCAGATTTTTCAAGGTTCT  350

seq1  TGGTGTCTTACCTGAGAATGAATTAAAACTCCACACAAATTTGTAAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCTTACCTGAGAATGAATTAAAACTCCACACAAATTTGTAAAAGT  400

seq1  AGAACTATTACTTTATTCAATAGCTCAGCAGTAACTCACCAAACACTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTATTACTTTATTCAATAGCTCAGCAGTAACTCACCAAACACTTTC  450

seq1  CATCCAAAGGCTATGCAAGATTCTACCCAAGATTCCTGTTATTGTTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAAAGGCTATGCAAGATTCTACCCAAGATTCCTGTTATTGTTTTCC  500

seq1  ATTCCTTTCATGGGATTCAACAGAAGGAAGTATTTGGTTGATAAGGAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTTCATGGGATTCAACAGAAGGAAGTATTTGGTTGATAAGGAGAA  550

seq1  GAGTTTGGATGGTTCTATATATTAACTTACAGTTTTCAATGTATATAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGGATGGTTCTATATATTAACTTACAGTTTTCAATGTATATAAAT  600

seq1  ATTTCTTTATGGAACTTGTCCATTCCCATAATTCTTCTGATTTTAATCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTATGGAACTTGTCCATTCCCATAATTCTTCTGATTTTAATCAC  650

seq1  ATGTACACCCAATTGTTCAAAGGTATAATGTGGTAAATGGTGAATTCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACACCCAATTGTTCAAAGGTATAATGTGGTAAATGGTGAATTCTCC  700

seq1  TTAAAGGCTACACAGTTGCCCTATTGTGCATGCACACAAAACCAGT-CCA  749
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTAAAGGCTACACAGTTGCCCTATTGTGCATGCACACAAAACCAGTCCCA  750

seq1  GGCCAGA-TTGACCCATCATTCATTTGTTTCAGGGTTTGACCCAGGATTG  798
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGATTTGACCCATCATTCATTTGTTTCAGGGTTTGACCCAGGATTG  800

seq1  TCTGAATAATGATAAGATAGTATCTAAGTTTGCTACAGTAGTGATTCATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATAATGATAAGATAGTATCTAAGTTTGCTACAGTAGTGATTCATT  850

seq1  TCCATTGTTT-AAAGCAAGTGCAGCCTTATACAAGTGGAAGACAAAGGCT  897
      |||||||||| |||||||||||||||||||||||||||||||| || |||
seq2  TCCATTGTTTAAAAGCAAGTGCAGCCTTATACAAGTGGAAGAC-AACGCT  899

seq1  GAAAAGTAGCTACT-AGGTTCACTGTTAAAAAAATGCATGCATTGTCTAT  946
      |||||||||||||| || ||||||||||||||||||||||||||||||||
seq2  GAAAAGTAGCTACTAAGTTTCACTGTTAAAAAAATGCATGCATTGTCTAT  949

seq1  ACCAATT-GAAGTCAAAAGTTTCTTGCTATTCCCTATGCTTGCATACCTC  995
      ||||||| ||||||||||||||| ||||||||||||||||||||||||||
seq2  ACCAATTGGAAGTCAAAAGTTTCCTGCTATTCCCTATGCTTGCATACCTC  999

seq1  -AAAGACATCAGAGG--AGGGAGACAG-AGAG-ATTGTCCCTT-ACACTC  1039
       ||||||||||||||  ||| |||||| |||| |||||||||| ||||||
seq2  AAAAGACATCAGAGGAAAGGAAGACAGAAGAGAATTGTCCCTTAACACTC  1049

seq1  -ATGAATAT-GAGCTGATCCCCAAAACTGCTGGCAATGGGACAACATGGA  1087
       ||||| || |||||||| ||| |||||||||||||||| ||||||||||
seq2  AATGAAAATGGAGCTGATTCCCCAAACTGCTGGCAATGGTACAACATGGA  1099

seq1  --GAATCCACTAAGG-AAAAGGTGCCATTAAGGAG-ATCCCTC-TAAATG  1132
         ||||  |||||| ||||||||| || | | || ||||||| ||||||
seq2  AGAAATCACCTAAGGAAAAAGGTGCAATAAGGTAGAATCCCTCTTAAATG  1149

seq1  GTTTGATATTCTAATATTTGGCTCTCCTAACTC  1165
      | |||  ||   | |||||||| || |||||||
seq2  GCTTGGAAT--CATTATTTGGC-CTTCTAACTC  1179


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