BAC Information

Click to search

BAC

Clone NameB6Ng01-252H20
Chromosome1 (Build37)
Map Location 95,052,404 - 95,242,620
singlet/doubletdoublet
Overlap gene2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7
Upstream geneLOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt
Downstream geneTmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252H20.bB6Ng01-252H20.g
ACCGA059472GA059473
length1,1131,052
definitionB6Ng01-252H20.b B6Ng01-252H20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,052,404 - 95,053,503)(95,241,548 - 95,242,620)
sequence
gaattcctccagaggttctagagacctcagcatgacacacatgtccacag
gacagaagcagatgaagccctcagatcctcccgcatgagactcagggaac
cttgaggcgtttccccttctctcggggcccaaaggccctgagtgtcatct
acctccagtgctgggcattagctggtaccaggtccaccccgtggctggca
attcttctcaagatgccctcaggaaatccaagcttcaactgggccccctc
caaggcaggcacccggtgcttcttcctcaccacgggcacaacgttgaagc
ggatcttcctccagccactggacaccagcagagacaggcgcatctgccct
tccttcagattagcagcattcagtgaacctgcaacaaccctccattaatc
tagctccccttttctgggcttaaccctgccttggtctaggatacgttaca
tgctgtcttaatgccctcccctgaatcgtcttcccctctacctaccatct
agacagaggcattccgcaacccaccaactgagccgggtcacagcatcctc
tgtaacaacagcttccctcatgagtcttctctctgctaggcccctccctc
catcttgttgcctgagccggctgcccacacctcctagacctgtgggatct
gccccttgtttgtggtcaggttccaacaaaaaaacagctccacccatgct
ggatagagctaggagagagccctggtcccaaagaaaagcattaggcctgg
atggtgctgacccagtcccagcatgcttaaagcagtatttgaagagctaa
gctggtagagttccctcaagctcacccagacccctaccaccctgggcagc
tcagatcctgcagctcttttgctggaggactgtgataaagacatcccatt
gcttctctctgaccctttttccgtcttcattgaaaggccagtggggtccc
tcttgggcacagcaatgcattcctggggactttgaaccccttagacactg
attgctggtaaggctaggctttcagccattggtgtcatgggagaccacct
ccacctacagtgttctgcagactccacaccccctccttccagcattgtgg
ccaggaaggacaa
gaattcagtttatgaacatttgaatgtcttctacatccaatagtatttaa
gatacagagacagtaactgggaggccacatggagacaattaacatgccat
ccttcccctctgagaacttgtaaagagttgacaagtgtcaactgaaatct
ggatcatctacaatgggaaacactaatgacaccagatacagaagtacctt
ccaagaggctctcacatctgatgtgatgacccttctcacatctcactgtg
acccttctgccacataccttcattgatgtctcactatccatttggccaag
ataaatggttaaattttcaggcccacattccaaaagaaatcaagactagc
taagatgagactgtgggcagagtgaatgaaaacaagaatgtctcaaaaaa
tggcagaagccccaggtaaactgctggtgttaaataaccacaggatagag
ttaatcatgcaaagttttttggagtaaataaaacagattttgagttatga
acaaagcaacaatgaaacatggctctggcaaatgatcttcctttctaaac
ctcaatattcccctctgtagaccagagttagtagagtaccttctcctgtc
aggaccaaataagaaaggacacaagagtagctcatgtgtatgacacggag
aagaatgtatgagttaccaagaggcactttacagtctgtgatctagagtt
aggaaaactaggttctgtgttacagtctctgtatctccccctgtgcctct
atcctcagggcagtagagaggttccagagcctgcgacactgtgcaagaat
gtgactacaaggctctaggtagaataggctagcaaaaggcaatgaaatct
atcaagacgaggaaggttgagttaaggcattagcagtgatagagaaagtg
gcaaaacatgctcagcctggtctacacaggccagccacggaaatggcaag
aacctgtcttaaaagacaaaagaagcattacacgacaaatccaccaaccc
aaccagcacacaaaacgcacaataatagaaataaaaaaaaaagaactcca
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_95052404_95053503
seq2: B6Ng01-252H20.b_51_1163

seq1  GAATTCCTCCAGAGGTTCTAGAGACCTCAGCATGACACACATGTCCACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCAGAGGTTCTAGAGACCTCAGCATGACACACATGTCCACAG  50

seq1  GACAGAAGCAGATGAAGCCCTCAGATCCTCCCGCATGAGACTCAGGGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAGCAGATGAAGCCCTCAGATCCTCCCGCATGAGACTCAGGGAAC  100

seq1  CTTGAGGCGTTTCCCCTTCTCTCGGGGCCCAAAGGCCCTGAGTGTCATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGCGTTTCCCCTTCTCTCGGGGCCCAAAGGCCCTGAGTGTCATCT  150

seq1  ACCTCCAGTGCTGGGCATTAGCTGGTACCAGGTCCACCCCGTGGCTGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCAGTGCTGGGCATTAGCTGGTACCAGGTCCACCCCGTGGCTGGCA  200

seq1  ATTCTTCTCAAGATGCCCTCAGGAAATCCAAGCTTCAACTGGGCCCCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCTCAAGATGCCCTCAGGAAATCCAAGCTTCAACTGGGCCCCCTC  250

seq1  CAAGGCAGGCACCCGGTGCTTCTTCCTCACCACGGGCACAACGTTGAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAGGCACCCGGTGCTTCTTCCTCACCACGGGCACAACGTTGAAGC  300

seq1  GGATCTTCCTCCAGCCACTGGACACCAGCAGAGACAGGCGCATCTGCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTCCTCCAGCCACTGGACACCAGCAGAGACAGGCGCATCTGCCCT  350

seq1  TCCTTCAGATTAGCAGCATTCAGTGAACCTGCAACAACCCTCCATTAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAGATTAGCAGCATTCAGTGAACCTGCAACAACCCTCCATTAATC  400

seq1  TAGCTCCCCTTTTCTGGGCTTAACCCTGCCTTGGTCTAGGATACGTTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCCCCTTTTCTGGGCTTAACCCTGCCTTGGTCTAGGATACGTTACA  450

seq1  TGCTGTCTTAATGCCCTCCCCTGAATCGTCTTCCCCTCTACCTACCATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCTTAATGCCCTCCCCTGAATCGTCTTCCCCTCTACCTACCATCT  500

seq1  AGACAGAGGCATTCCGCAACCCACCAACTGAGCCGGGTCACAGCATCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGGCATTCCGCAACCCACCAACTGAGCCGGGTCACAGCATCCTC  550

seq1  TGTAACAACAGCTTCCCTCATGAGTCTTCTCTCTGCTAGGCCCCTCCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACAACAGCTTCCCTCATGAGTCTTCTCTCTGCTAGGCCCCTCCCTC  600

seq1  CATCTTGTTGCCTGAGCCGGCTGCCCACACCTCCTAGACCTGTGGGATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGTTGCCTGAGCCGGCTGCCCACACCTCCTAGACCTGTGGGATCT  650

seq1  GCCCCTTGTTTGTGGTCAGGTTCCAACAAAAAAACAGCTCCACCCATGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTTGTTTGTGGTCAGGTTCCAACAAAAAAACAGCTCCACCCATGCT  700

seq1  GGATAGAGCTAGGAGAGAGCCCTGGTCCCAAAGAAAAGCATTAGGCCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGAGCTAGGAGAGAGCCCTGGTCCCAAAGAAAAGCATTAGGCCTGG  750

seq1  ATGGTGCTGACCCAGTCCCAGCATGCTTAAAGCAGGTATTTGAAGAGCTA  800
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATGGTGCTGACCCAGTCCCAGCATGCTTAAAGCA-GTATTTGAAGAGCTA  799

seq1  AGCTGGTAGAGTTCCCTCAAGCTCACCCAGACCCCTACCACCCTGGGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGTAGAGTTCCCTCAAGCTCACCCAGACCCCTACCACCCTGGGCAG  849

seq1  CTCAGATCCTGCAGCTC-TTTGCTGGAGGACTGTGATAAAGACATCCCAT  899
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTCAGATCCTGCAGCTCTTTTGCTGGAGGACTGTGATAAAGACATCCCAT  899

seq1  TGCTTCTCTCTGAACC-TTTTCCGTCTTCAATGAAA-GCCAGTGGGGT-C  946
      ||||||||||||| || ||||||||||||| ||||| ||||||||||| |
seq2  TGCTTCTCTCTGACCCTTTTTCCGTCTTCATTGAAAGGCCAGTGGGGTCC  949

seq1  CTCTTGGGCACAGCAATGCATTCC-GGGGACTTTGAACCCC-TAGACACT  994
      |||||||||||||||||||||||| |||||||||||||||| ||||||||
seq2  CTCTTGGGCACAGCAATGCATTCCTGGGGACTTTGAACCCCTTAGACACT  999

seq1  GATTGCTGGTAAGGCTAGGC-TTCAGCCA-TGGTGTCAT-GGAGAC--AC  1039
      |||||||||||||||||||| |||||||| ||||||||| ||||||   |
seq2  GATTGCTGGTAAGGCTAGGCTTTCAGCCATTGGTGTCATGGGAGACCACC  1049

seq1  TTCACCTACAGTG-TCTGCAGACT-CACA-CCCCTCC-TCCAGCCATTGT  1085
      | ||||||||||| |||||||||| |||| ||||||| ||||| ||||||
seq2  TCCACCTACAGTGTTCTGCAGACTCCACACCCCCTCCTTCCAG-CATTGT  1098

seq1  GGCCAGGAAGGACAA  1100
      |||||||||||||||
seq2  GGCCAGGAAGGACAA  1113

seq1: chr1_95241548_95242620
seq2: B6Ng01-252H20.g_67_1118 (reverse)

seq1  TTTGGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGGCGTT  50
      ||||||||| |||||||||| ||| | || || |           ||| |
seq2  TTTGGAGTTCTTTTTTTTTTATTTCTATTATTGT-----------GCG-T  38

seq1  TTTGTGTGGCTTGGTTTGGGTTGGGTTGGATTTGTCGTTGTAATGCCTTT  100
      ||||||| |||  | |||||||||  ||||||||||| ||||||||  ||
seq2  TTTGTGT-GCT--GGTTGGGTTGG--TGGATTTGTCG-TGTAATGC--TT  80

seq1  CTTTTGTCTTTTAAGACAGGTTCTTGCCATTTCCGTGGCTGGCCTGTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTCTTTTAAGACAGGTTCTTGCCATTTCCGTGGCTGGCCTGTGTA  130

seq1  GACCAGGCTGAGCATGTTTTGCCACCTTCTCTATCACTGCTAATGCCTTA  200
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GACCAGGCTGAGCATGTTTTGCCACTTTCTCTATCACTGCTAATGCCTTA  180

seq1  ACTCAAACCTTCCTCGTCTTGATAGATTTCATTGCCTTTTGCTAGCCTAT  250
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTC-AACCTTCCTCGTCTTGATAGATTTCATTGCCTTTTGCTAGCCTAT  229

seq1  TCTACCTAGAGCCTTGTAGTCACATTCTTGCACAGTGTCGCAGGCTCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTAGAGCCTTGTAGTCACATTCTTGCACAGTGTCGCAGGCTCTGG  279

seq1  AACCTCTCTACTGCCCTGAGGATAGAGGCACAGGGGGAGATACAGAGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTCTACTGCCCTGAGGATAGAGGCACAGGGGGAGATACAGAGACT  329

seq1  GTAACACAGAACCTAGTTTTCCTAACTCTAGATCACAGACTGTAAAGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACACAGAACCTAGTTTTCCTAACTCTAGATCACAGACTGTAAAGTGC  379

seq1  CTCTTGGTAACTCATACATTCTTCTCCGTGTCATACACATGAGCTACTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGTAACTCATACATTCTTCTCCGTGTCATACACATGAGCTACTCT  429

seq1  TGTGTCCTTTCTTATTTGGTCCTGACAGGAGAAGGTACTCTACTAACTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCTTTCTTATTTGGTCCTGACAGGAGAAGGTACTCTACTAACTCT  479

seq1  GGTCTACAGAGGGGAATATTGAGGTTTAGAAAGGAAGATCATTTGCCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTACAGAGGGGAATATTGAGGTTTAGAAAGGAAGATCATTTGCCAGA  529

seq1  GCCATGTTTCATTGTTGCTTTGTTCATAACTCAAAATCTGTTTTATTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTTTCATTGTTGCTTTGTTCATAACTCAAAATCTGTTTTATTTAC  579

seq1  TCCAAAAAACTTTGCATGATTAACTCTATCCTGTGGTTATTTAACACCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAAACTTTGCATGATTAACTCTATCCTGTGGTTATTTAACACCAG  629

seq1  CAGTTTACCTGGGGCTTCTGCCATTTTTTGAGACATTCTTGTTTTCATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTACCTGGGGCTTCTGCCATTTTTTGAGACATTCTTGTTTTCATTC  679

seq1  ACTCTGCCCACAGTCTCATCTTAGCTAGTCTTGATTTCTTTTGGAATGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCCCACAGTCTCATCTTAGCTAGTCTTGATTTCTTTTGGAATGTG  729

seq1  GGCCTGAAAATTTAACCATTTATCTTGGCCAAATGGATAGTGAGACATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGAAAATTTAACCATTTATCTTGGCCAAATGGATAGTGAGACATCA  779

seq1  ATGAAGGTATGTGGCAGAAGGGTCACAGTGAGATGTGAGAAGGGTCATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGTATGTGGCAGAAGGGTCACAGTGAGATGTGAGAAGGGTCATCA  829

seq1  CATCAGATGTGAGAGCCTCTTGGAAGGTACTTCTGTATCTGGTGTCATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGATGTGAGAGCCTCTTGGAAGGTACTTCTGTATCTGGTGTCATTA  879

seq1  GTGTTTCCCATTGTAGATGATCCAGATTTCAGTTGACACTTGTCAACTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCCCATTGTAGATGATCCAGATTTCAGTTGACACTTGTCAACTCT  929

seq1  TTACAAGTTCTCAGAGGGGAAGGATGGCATGTTAATTGTCTCCATGTGGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGTTCTCAGAGGGGAAGGATGGCATGTTAATTGTCTCCATGTGGC  979

seq1  CTCCCAGTTACTGTCTCTGTATCTTAAATACTATTGGATGTAGAAGACAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGTTACTGTCTCTGTATCTTAAATACTATTGGATGTAGAAGACAT  1029

seq1  TCAAATGTTCATAAACTGAATTC  1073
      |||||||||||||||||||||||
seq2  TCAAATGTTCATAAACTGAATTC  1052