BAC Information

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BAC

Clone NameB6Ng01-252M03
Chromosome1 (Build37)
Map Location 72,180,378 - 72,330,233
singlet/doubletdoublet
Overlap geneMreg, Pecr
Upstream geneLOC667900, Abca12, LOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937, LOC100043255
Downstream geneTmem169, Xrcc5, March4, Smarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252M03.bB6Ng01-252M03.g
ACCGA059669GA059670
length1,1151,162
definitionB6Ng01-252M03.b B6Ng01-252M03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,329,112 - 72,330,233)(72,180,378 - 72,181,563)
sequence
gaattcactttgtagaccagctggcctcgaactcagaaatccgcctgcct
ctgcctcccgagtgctgggattaaaggcgtgcgccaccatgtccgggttt
tgggtttactcttaacccaaagcaaactgttcccaggtggtggtgacata
tgactttaattccagcactcaagaggcagagacaggtggatctctgtgag
tttcaggctagcctggtctacagatcgaggtccaagtcagtcgaggtttc
acaaagaaaccctgcctcgaagatgtgggtaagaaggaagagtgcaaagt
ttataaaggcatatttgaaaagtatttccaacacgacgcttgtattgtgc
aaagagctttgacaagtagattttttttaaagatttttaaaattttattt
tatgtatatgagtacactgtagctgtcttcagacacaccagaagacagta
tcagatcccattacagatggttgtgagctaccatatggttgctggaaatt
gaactcaggacctctggaagagcagacagatctcttatctgctgagccgt
ctctccagccctgacaagtagatttttaaaaatctgacatcaagtggaac
aaatgagaaatgatttggccttgacattccatgctgaactaacacaagaa
ataaatacatggagaaatgattgactttatcttatcagcagtacactgca
aaaaaaaaaaacaagacagtattgcagtttgcactttaccattacttcca
gcctgtcttccaccaggaaacttcccctgggaggaggaattattaaaaaa
aaaaaaaaatcaaccagtacctgtttagtacaaaggtcaggatcttggcc
tctgtcagcaaatttgcagaaccttgggttcctcttctgtggattgctag
ttgttgaacctcttttgagtaagtttgcattgggcaaacactacaccagt
tctggggtcggccaacagagtatgtggcatgactgtaaatatagccactc
agccttggagatgctgtgagagtcctggggtatgtccctaggaaatactt
ctaacacctaaaagaaaagtgaacattgtactgctgtattatcatggaat
tgcctccatgaagaa
gaattccaagtattcaaacaaaacgcttggatatccacatgaaaatacat
acacaaattgtcttagtttctttccctgaccaaagcaacttaaggaagga
agtttattctgactcacagtctaagcataaacagtccatcattcggggaa
ctgaaagcagagaatttgaagtagctgaccatgtcccattctccacatca
ggacgcagagagtggtggatatatgctgctgcttcctgcctttctccatt
ctttacactccaggattccagccagggaatgacacaccacctcaactgac
aaattcaagacaacactccacaggcacacccagagggccactgttctctt
gctgtgaaaaggcaccaggtccaagccaactcttacaaaagaaagcattt
agttagaggcttgcttacagagagggttaggtccattatcatcatggtgc
tggagaaagagctgagggctttacaccctgatccacaggcagcaagccca
cccccagtgacacacctacctaatccttcccaacagctcattaaccgggg
gccaatcatgtaaatatatgtgcctgtggggggcattctcattcaagcca
ccatacccttctaattctacattttgtcaagtagacaggtagcacaatgc
ccataatagatttgttgataatcatcaaaaatagcaataacatgtttgtg
ggagtggatgtctgggacttgcaaaaactcttaggttaaagctctaaccc
cctgtggtggcttgaatggaaaacgttccctgtagcttcttgtgtctgaa
tacttggtcctaggtttggtggtgctgtgtgaggaggttgtggaaccttg
ctagaggaattgcattactgggtgggagagggcagggcttagtttatagc
cttgcctcactttcagttcacttttagtttcctgttggtggttggtttct
caggttcctgatcagccactggcttgcttccctggctgctcagcttgctt
ttgtataaacccaggactagcagccaggaggcaccacccacataggctac
cacccttggtcacttatgagagaaattgccctacagcctggatctcatca
gcattctcaaggaggctctcctgatactcagctggtcagtttgcccataa
aaccaaccagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_72329112_72330233
seq2: B6Ng01-252M03.b_46_1160 (reverse)

seq1  TTCTCTCATGGAAGGCAATCCAATGATAAATACAGCAGTACAATGTTCAC  50
      |||| |||||| ||||||| | ||||| ||||||||||||||||||||||
seq2  TTCT-TCATGG-AGGCAATTCCATGAT-AATACAGCAGTACAATGTTCAC  47

seq1  TTCTCTTTTAGGTGTAGGAAGTATTTCCCTAGGGACATACCCCAGGACTC  100
      || ||||||||||||  ||||||||| |||||||||||||||||||||||
seq2  TTTTCTTTTAGGTGTTAGAAGTATTT-CCTAGGGACATACCCCAGGACTC  96

seq1  TCACAGCATCTCCAGGGCTGAGTGGCCTTATATTTACAGTCATGCCACAA  150
      |||||||||||||| |||||||||||  |||||||||||||||||||| |
seq2  TCACAGCATCTCCAAGGCTGAGTGGC--TATATTTACAGTCATGCCAC-A  143

seq1  TACTCTGTTGGCCGACCCCAGAACTGGTGTAGTGTTTGCCCAATGCAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGTTGGCCGACCCCAGAACTGGTGTAGTGTTTGCCCAATGCAAAC  193

seq1  TTACTCAAAAAGAGGTTCAACAACTAGCAATCCACAGAAGAGGAA-CCAA  249
      |||||| |||||||||||||||||||||||||||||||||||||| ||||
seq2  TTACTC-AAAAGAGGTTCAACAACTAGCAATCCACAGAAGAGGAACCCAA  242

seq1  GGTTCTGCAAATTTGCTGACAGAGGCCAAGATCCTGACCTTTGTACTAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGCAAATTTGCTGACAGAGGCCAAGATCCTGACCTTTGTACTAAA  292

seq1  CAGGTACTGGTTGATTTTTTTTTTTTTTTAATAATTCCTCCTCCCAGGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTACTGGTTGATTTTTTTTTTTTTTTAATAATTCCTCCTCCCAGGGG  342

seq1  AAGTTTCCTGGTGGAAGACAGGCTGGAAGTAATGGTAAAGTGCAAACTGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCCTGGTGGAAGACAGGCTGGAAGTAATGGTAAAGTGCAAACTGC  392

seq1  AATACTGTCTTGTTTTTTTTTTTTGCAGTGTACTGCTGATAAGATAAAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGTCTTGTTTTTTTTTTTTGCAGTGTACTGCTGATAAGATAAAGT  442

seq1  CAATCATTTCTCCATGTATTTATTTCTTGTGTTAGTTCAGCATGGAATGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCATTTCTCCATGTATTTATTTCTTGTGTTAGTTCAGCATGGAATGT  492

seq1  CAAGGCCAAATCATTTCTCATTTGTTCCACTTGATGTCAGATTTTTAAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCAAATCATTTCTCATTTGTTCCACTTGATGTCAGATTTTTAAAA  542

seq1  ATCTACTTGTCAGGGCTGGAGAGACGGCTCAGCAGATAAGAGATCTGTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTTGTCAGGGCTGGAGAGACGGCTCAGCAGATAAGAGATCTGTCT  592

seq1  GCTCTTCCAGAGGTCCTGAGTTCAATTTCCAGCAACCATATGGTAGCTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCCAGAGGTCCTGAGTTCAATTTCCAGCAACCATATGGTAGCTCA  642

seq1  CAACCATCTGTAATGGGATCTGATACTGTCTTCTGGTGTGTCTGAAGACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATCTGTAATGGGATCTGATACTGTCTTCTGGTGTGTCTGAAGACA  692

seq1  GCTACAGTGTACTCATATACATAAAATAAAATTTTAAAAATCTTTAAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGTGTACTCATATACATAAAATAAAATTTTAAAAATCTTTAAAAA  742

seq1  AAATCTACTTGTCAAAGCTCTTTGCACAATACAAGCGTCGTGTTGGAAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTACTTGTCAAAGCTCTTTGCACAATACAAGCGTCGTGTTGGAAAT  792

seq1  ACTTTTCAAATATGCCTTTATAAACTTTGCACTCTTCCTTCTTACCCACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCAAATATGCCTTTATAAACTTTGCACTCTTCCTTCTTACCCACA  842

seq1  TCTTCGAGGCAGGGTTTCTTTGTGAAACCTCGACTGACTTGGACCTCGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCGAGGCAGGGTTTCTTTGTGAAACCTCGACTGACTTGGACCTCGAT  892

seq1  CTGTAGACCAGGCTAGCCTGAAACTCACAGAGATCCACCTGTCTCTGCCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGACCAGGCTAGCCTGAAACTCACAGAGATCCACCTGTCTCTGCCT  942

seq1  CTTGAGTGCTGGAATTAAAGTCATATGTCACCACCACCTGGGAACAGTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTGCTGGAATTAAAGTCATATGTCACCACCACCTGGGAACAGTTT  992

seq1  GCTTTGGGTTAAGAGTAAACCCAAAACCCGGACATGGTGGCGCACGCCTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGGTTAAGAGTAAACCCAAAACCCGGACATGGTGGCGCACGCCTT  1042

seq1  TAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGC  1092

seq1  CAGCTGGTCTACAAAGTGAATTC  1122
      |||||||||||||||||||||||
seq2  CAGCTGGTCTACAAAGTGAATTC  1115

seq1: chr1_72180378_72181563
seq2: B6Ng01-252M03.g_68_1229

seq1  GAATTCCAAGTATTCAAACAAAACGCTTGGATATCCACATGAAAATACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTATTCAAACAAAACGCTTGGATATCCACATGAAAATACAT  50

seq1  ACACAAATTGTCTTAGTTTCTTTCCCTGACCAAAGCAACTTAAGGAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAATTGTCTTAGTTTCTTTCCCTGACCAAAGCAACTTAAGGAAGGA  100

seq1  AGTTTATTCTGACTCACAGTCTAAGCATAAACAGTCCATCATTCGGGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATTCTGACTCACAGTCTAAGCATAAACAGTCCATCATTCGGGGAA  150

seq1  CTGAAAGCAGAGAATTTGAAGTAGCTGACCATGTCCCATTCTCCACATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGCAGAGAATTTGAAGTAGCTGACCATGTCCCATTCTCCACATCA  200

seq1  GGACGCAGAGAGTGGTGGATATATGCTGCTGCTTCCTGCCTTTCTCCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGCAGAGAGTGGTGGATATATGCTGCTGCTTCCTGCCTTTCTCCATT  250

seq1  CTTTACACTCCAGGATTCCAGCCAGGGAATGACACACCACCTCAACTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACACTCCAGGATTCCAGCCAGGGAATGACACACCACCTCAACTGAC  300

seq1  AAATTCAAGACAACACTCCACAGGCACACCCAGAGGGCCACTGTTCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAAGACAACACTCCACAGGCACACCCAGAGGGCCACTGTTCTCTT  350

seq1  GCTGTGAAAAGGCACCAGGTCCAAGCCAACTCTTACAAAAGAAAGCATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGAAAAGGCACCAGGTCCAAGCCAACTCTTACAAAAGAAAGCATTT  400

seq1  AGTTAGAGGCTTGCTTACAGAGAGGGTTAGGTCCATTATCATCATGGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAGGCTTGCTTACAGAGAGGGTTAGGTCCATTATCATCATGGTGC  450

seq1  TGGAGAAAGAGCTGAGGGCTTTACACCCTGATCCACAGGCAGCAAGCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAAGAGCTGAGGGCTTTACACCCTGATCCACAGGCAGCAAGCCCA  500

seq1  CCCCCAGTGACACACCTACCTAATCCTTCCCAACAGCTCATTAACCGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGTGACACACCTACCTAATCCTTCCCAACAGCTCATTAACCGGGG  550

seq1  GCCAATCATGTAAATATATGTGCCTGTGGGGGGCATTCTCATTCAAGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATCATGTAAATATATGTGCCTGTGGGGGGCATTCTCATTCAAGCCA  600

seq1  CCATACCCTTCTAATTCTACATTTTGTCAAGTAGACAGGTAGCACAATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACCCTTCTAATTCTACATTTTGTCAAGTAGACAGGTAGCACAATGC  650

seq1  CCATAATAGATTTGTTGATAATCATCAAAAATAGCAATAACATGTTTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAATAGATTTGTTGATAATCATCAAAAATAGCAATAACATGTTTGTG  700

seq1  GGAGTGGATGTCTGGGACTTGCAAAAACTCTTAGGTTAAAGCTCTAACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGGATGTCTGGGACTTGCAAAAACTCTTAGGTTAAAGCTCTAACCC  750

seq1  CCTGTGGTGGCTTGAATGGAAAACGTTCCCTGTAGCTTCTTGTGTCTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGTGGCTTGAATGGAAAACGTTCCCTGTAGCTTCTTGTGTCTGAA  800

seq1  TACTTGGTCCTAGGTTTGGTGGTGCTGTGTGAGGAGGTTGTGGAACCTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGGTCCTAGGTTTGGTGGTGCTGTGTGAGGAGGTTGTGGAACCTTG  850

seq1  CTAGAGGAATTGCATTACTGGGTGGGAGAGGGCAGGGCTTAGTTTATAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGGAATTGCATTACTGGGTGGGAGAGGGCAGGGCTTAGTTTATAGC  900

seq1  CTTGCCTCACTTTCAGTTCACTTTTAGTTTCCTGTTGGTGGTTGGTTTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTCACTTTCAGTTCACTTTTAGTTTCCTGTTGGTGGTTGGTTTCT  950

seq1  CAGGTTCCTGATCCAGCCACTGGCTTGCTTCCCCTGGCTTGCTCAGCTTG  1000
      |||||||||||| ||||||||||||||||| ||||||| |||||||||||
seq2  CAGGTTCCTGAT-CAGCCACTGGCTTGCTT-CCCTGGC-TGCTCAGCTTG  997

seq1  CTTTTGTATAAAACCCAGGACTAGCAGCCCAGGGAAGGCACCACCCACCA  1050
      ||||||||| ||||||||||||||||| |||||  |||||||||||| ||
seq2  CTTTTGTAT-AAACCCAGGACTAGCAG-CCAGG--AGGCACCACCCA-CA  1042

seq1  TAGGCCCACCCACCCTTGGTCACTAATTGAGAGAA--TGCCTTACAG-CT  1097
      ||||  |  ||||||||||||||| | ||||||||  |||| ||||| ||
seq2  TAGG--CTACCACCCTTGGTCACTTA-TGAGAGAAATTGCCCTACAGCCT  1089

seq1  GGGTCTCATGCAGGCATTTCCTCAAGGGAGGCTCCTTTCTCTGTGATAAC  1147
      || |||||| || |||||  ||||| ||||||     ||||  |||| ||
seq2  GGATCTCAT-CA-GCATT--CTCAA-GGAGGC-----TCTC-CTGAT-AC  1127

seq1  TCCAGCTTGTGTCAAGTTGGCACATAAAACCAGCCAGTA  1186
      | ||||| ||    |||| || |||||||||| ||||||
seq2  T-CAGCTGGT---CAGTTTGCCCATAAAACCAACCAGTA  1162