BAC Information

Click to search

BAC

Clone NameB6Ng01-253B19
Chromosome1 (Build37)
Map Location 67,129,956 - 67,277,850
singlet/doubletdoublet
Overlap geneCps1
Upstream geneMtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1
Downstream geneKif22-ps, Erbb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253B19.bB6Ng01-253B19.g
ACCGA059934GA059935
length1,1581,121
definitionB6Ng01-253B19.b B6Ng01-253B19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,276,685 - 67,277,850)(67,129,956 - 67,130,713)
sequence
gaattcaactgcattttcacttaatagtattttatttaaaagttcacaat
taaagtattgtaataaccaaaacacttaaaagcaacaaatgctatcttga
aagaaagaaaaaaaaatgttgcatgtaaaggaatggaggccctatgtgta
atatgtgtggtatacagaatgcaaggtgagagtcaggctactgccagaat
ccatcctacaaaaggaacaggaacttctacagggtttccaaattggagca
gaaggtgaatcagcctatacatttcacttgacttatattaaaatccaaca
tgaatatcaagaaaataaccacttctgtgtcctctgtcatctgctgacat
cttctaaaacctgaagcaaggatctatcaaagaaatccaatctcactttg
tgaatcatgggaagaaaaaatgctatttctaggttgactatataagtgag
aatcattgccaaaaaaaaataacaatacacaagcatcatgatgccattca
taaattaaatccatattttattttaacaaaatttcatggtaatctgtcct
gtttgtggactttgggtgtgactgaagttactttaaaacaagagtatgtt
tagagtatagaattcaggagatagggcagcagctttttctacttcaatcg
ttataaaccagcaccatgaaatgttaagtcagtctacaaaagataatgtg
tgaatggttgaattccttgtgaagaacaaatgacttgggaagaacctata
gttttgaaacagtgactgacaacaatctagtggttaaagatacagactac
taagaacaaaggaaaccaaaataaagtttggcaacaccatccattcctgg
agataggctgggaccagtccctttggtgcagcatgactcgagctgactcg
aggatgaattcaccagaccagcatactgctttaggcggcctttccagcac
tgtactgcctgtagtggaacagactcttggagtccacagtgcgagatttc
tgcacagcttcagcaaaagtttggtcacctgaaagaaaatgtcagatgtt
agcactacaagaagatgaaagtgatgcaagatggatcaggagtgaaaagg
tcacaggaatctgctcccagtttcaagggaatggaatgagctgtgaatgt
gcttcttt

gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctggagtctaagttcttgagttctctgtatatattggatattagcctt
ctttcagatggagggttgataaagattttttcccaattcgttggttgcca
ttttgtcctattgacagtatcctttgccttacagaagctttgtaatttta
tgaggtcccttacatatccagtctgttattctatgtctttttactgggga
attaagttcatcgatgttaagagatattaaggaatagtgattgttgctcc
ctgttattattgatgtcatttttatgttattaaatgtcttaaatgatgag
ctgcttcttctcatcggaattcattatggggagccctggagatggccttt
gcctatagagccactgtctaatttcccatagaaggcttctctgcactccc
agctatgctgttgctgtcaagccaaggactcctccccctgatcccagcct
cctgtgggatcagctggaacttcccccccaacacacaccctgagccagat
ccagcctgcggggggtgagagaggagggtgcactccattctcagttcttc
cagggcttccaggaacactggaatgtccaagagtctgagaaccagatggc
cccagccttgttgcatgtctggagacccctgaggtagctccagctgtctg
tatctcagagtatgctaacccactcccaagtggtgtcctggggcttcctt
acagcccaacacctgcaaggggatagtttgtggtaagtgctgtcaactcc
cacgtccagcctcccctgggactgtgtcctgtggcagagcagactcagag
acccataaccctacaaaaccccaagaaactgaaaggtttcttacgaaatg
tgcatgcacctgtgatgtgcatggaagagagaagttatgtaatgataaag
attctttgaagtttggaagcagaattgttccaaattcatataaaaatcag
atgttactgattgcagcaaattattaaaaaagaataaatatatagtgtaa
ttattaatgatcttgtccataatcaatcaaatggttgttttactctgtga
aattttctattgggagagacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_67276685_67277850
seq2: B6Ng01-253B19.b_45_1202 (reverse)

seq1  AAAGAAGCCACA-TCACATCTTTCATTCCATACCCCTTTGAAAATTGGGA  49
      ||||||| |||| ||||| |  ||||||||| |||  ||| ||| |||||
seq2  AAAGAAG-CACATTCACAGC--TCATTCCATTCCC--TTG-AAACTGGGA  44

seq1  GCAGA-TCTTGTGA-CTTTTCACTCCTGATTCATCCTGCATTCACTTTCA  97
      ||||| || ||||| ||||||||||||||| |||| |||| |||||||||
seq2  GCAGATTCCTGTGACCTTTTCACTCCTGATCCATCTTGCA-TCACTTTCA  93

seq1  TC-TCTTGTAGGTTGCTAACATTCTTGACATTTTCTTTCAGGTGACCAAA  146
      || ||||||||  |||||||||   |||||||||||||||||||||||||
seq2  TCTTCTTGTAG--TGCTAACAT--CTGACATTTTCTTTCAGGTGACCAAA  139

seq1  CTTTTTGCTGAAGCTGTGCAGAAATCTCGCACTGTGGACTCCAAGAGTCT  196
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-TTTTGCTGAAGCTGTGCAGAAATCTCGCACTGTGGACTCCAAGAGTCT  188

seq1  GTTCCACTACAGGCAGTACAGTGCTGGAAAGGCCGCCTAAAGCAGTATGC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCACTACAGGCAGTACAGTGCTGGAAAGGCCGCCTAAAGCAGTATGC  238

seq1  TGGTCTGGTGAATTCATCCTCGAGTCAGCTCGAGTCATGCTGCACCAAAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGGTGAATTCATCCTCGAGTCAGCTCGAGTCATGCTGCACCAAAG  288

seq1  GGACTGGTCCCAGCCTATCTCCAGGAATGGATGGTGTTGCCAAACTTTAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGGTCCCAGCCTATCTCCAGGAATGGATGGTGTTGCCAAACTTTAT  338

seq1  TTTGGTTTCCTTTGTTCTTAGTAGTCTGTATCTTTAACCACTAGATTGTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTCCTTTGTTCTTAGTAGTCTGTATCTTTAACCACTAGATTGTT  388

seq1  GTCAGTCACTGTTTCAAAACTATAGGTTCTTCCCAAGTCATTTGTTCTTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTCACTGTTTCAAAACTATAGGTTCTTCCCAAGTCATTTGTTCTTC  438

seq1  ACAAGGAATTCAACCATTCACACATTATCTTTTGTAGACTGACTTAACAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGAATTCAACCATTCACACATTATCTTTTGTAGACTGACTTAACAT  488

seq1  TTCATGGTGCTGGTTTATAACGATTGAAGTAGAAAAAGCTGCTGCCCTAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGTGCTGGTTTATAACGATTGAAGTAGAAAAAGCTGCTGCCCTAT  538

seq1  CTCCTGAATTCTATACTCTAAACATACTCTTGTTTTAAAGTAACTTCAGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGAATTCTATACTCTAAACATACTCTTGTTTTAAAGTAACTTCAGT  588

seq1  CACACCCAAAGTCCACAAACAGGACAGATTACCATGAAATTTTGTTAAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCAAAGTCCACAAACAGGACAGATTACCATGAAATTTTGTTAAAA  638

seq1  TAAAATATGGATTTAATTTATGAATGGCATCATGATGCTTGTGTATTGTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATGGATTTAATTTATGAATGGCATCATGATGCTTGTGTATTGTT  688

seq1  ATTTTTTTTTGGCAATGATTCTCACTTATATAGTCAACCTAGAAATAGCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTTGGCAATGATTCTCACTTATATAGTCAACCTAGAAATAGCA  738

seq1  TTTTTTCTTCCCATGATTCACAAAGTGAGATTGGATTTCTTTGATAGATC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTCCCATGATTCACAAAGTGAGATTGGATTTCTTTGATAGATC  788

seq1  CTTGCTTCAGGTTTTAGAAGATGTCAGCAGATGACAGAGGACACAGAAGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTCAGGTTTTAGAAGATGTCAGCAGATGACAGAGGACACAGAAGT  838

seq1  GGTTATTTTCTTGATATTCATGTTGGATTTTAATATAAGTCAAGTGAAAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTTTCTTGATATTCATGTTGGATTTTAATATAAGTCAAGTGAAAT  888

seq1  GTATAGGCTGATTCACCTTCTGCTCCAATTTGGAAACCCTGTAGAAGTTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGGCTGATTCACCTTCTGCTCCAATTTGGAAACCCTGTAGAAGTTC  938

seq1  CTGTTCCTTTTGTAGGATGGATTCTGGCAGTAGCCTGACTCTCACCTTGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCTTTTGTAGGATGGATTCTGGCAGTAGCCTGACTCTCACCTTGC  988

seq1  ATTCTGTATACCACACATATTACACATAGGGCCTCCATTCCTTTACATGC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTATACCACACATATTACACATAGGGCCTCCATTCCTTTACATGC  1038

seq1  AACATTTTTTTTTCTTTCTTTCAAGATAGCATTTGTTGCTTTTAAGTGTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTTTTTTCTTTCTTTCAAGATAGCATTTGTTGCTTTTAAGTGTT  1088

seq1  TTGGTTATTACAATACTTTAATTGTGAACTTTTAAATAAAATACTATTAA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTATTACAATACTTTAATTGTGAACTTTTAAATAAAATACTATTAA  1138

seq1  GTGAAAATGCAGTTGAATTC  1166
      ||||||||||||||||||||
seq2  GTGAAAATGCAGTTGAATTC  1158


seq1: chr1_67129956_67130713
seq2: B6Ng01-253B19.g_433_1186

seq1  AATTCATTATGGGGAGCCCTGGAGATGGCCTTTGCCTATAGAGCCACTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATTATGGGGAGCCCTGGAGATGGCCTTTGCCTATAGAGCCACTGT  50

seq1  CTAATTTCCCATAGAAGGCTTCTCTGCACTCCCAGCTATGCTGTTGCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTCCCATAGAAGGCTTCTCTGCACTCCCAGCTATGCTGTTGCTGT  100

seq1  CAAGCCAAGGACTCCTCCCCCTGATCCCAGCCTCCTGTGGGATCAGCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCAAGGACTCCTCCCCCTGATCCCAGCCTCCTGTGGGATCAGCTGG  150

seq1  AACTTCCCCCCCAACACACACCCTGAGCCAGATCCAGCCTGCGGGGGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCCCCCCAACACACACCCTGAGCCAGATCCAGCCTGCGGGGGGTG  200

seq1  AGAGAGGAGGGTGCACTCCATTCTCAGTTCTTCCAGGGCTTCCAGGAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGAGGGTGCACTCCATTCTCAGTTCTTCCAGGGCTTCCAGGAACA  250

seq1  CTGGAATGTCCAAGAGTCTGAGAACCAGATGGCCCCAGCCTTGTTGCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATGTCCAAGAGTCTGAGAACCAGATGGCCCCAGCCTTGTTGCATG  300

seq1  TCTGGAGACCCCTGAGGTAGCTCCAGCTGTCTGTATCTCAGAGTATGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGACCCCTGAGGTAGCTCCAGCTGTCTGTATCTCAGAGTATGCTA  350

seq1  ACCCACTCCCAAGTGGTGTCCTGGGGCTTCCTTACAGCCCAACACCTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTCCCAAGTGGTGTCCTGGGGCTTCCTTACAGCCCAACACCTGCA  400

seq1  AGGGGATAGTTTGTGGTAAGTGCTGTCAACTCCCACGTCCAGCCTCCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGATAGTTTGTGGTAAGTGCTGTCAACTCCCACGTCCAGCCTCCCCT  450

seq1  GGGACTGTGTCCTGTGGCAGAGCAGACTCAGAGACCCATAACCCTACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGTGTCCTGTGGCAGAGCAGACTCAGAGACCCATAACCCTACAAA  500

seq1  ACCCCAAGAAACTG-AAGGTTTCTTACGAAATGTGCATGCACCTGTGATG  549
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACCCCAAGAAACTGAAAGGTTTCTTACGAAATGTGCATGCACCTGTGATG  550

seq1  TGCATGGAAGAGAGAAGTTATGTAATGATAAAGATTCTTTGAAGTTGGGA  599
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGCATGGAAGAGAGAAGTTATGTAATGATAAAGATTCTTTGAAGTTTGGA  600

seq1  AGCAGAATTGTTTCCAAATTCATATAAAAATCAGATGTTACTGAATTGCA  649
      |||||||||| |||||||||||||||||||||||||||||||| ||||| 
seq2  AGCAGAATTG-TTCCAAATTCATATAAAAATCAGATGTTACTG-ATTGC-  647

seq1  AGCAAATTATTAAAAAAGAATAAATATTAATAGTGTAAATTATT-ATGAT  698
      |||||||||||||||||||||||||||  ||||||| ||||||| |||||
seq2  AGCAAATTATTAAAAAAGAATAAATAT--ATAGTGT-AATTATTAATGAT  694

seq1  CTTGTCACATAATCAATCAAAATTGTTGTTT--ATCTGTGATA-TTTCTA  745
      |||||| ||||||||||| |||| |||||||   ||||||| | ||||||
seq2  CTTGTC-CATAATCAATC-AAATGGTTGTTTTACTCTGTGAAATTTTCTA  742

seq1  TTTGGAGAAGACC  758
      || |||| |||||
seq2  TTGGGAG-AGACC  754


| Home | SequenceCutter | Blast | Download |