BAC Information

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BAC

Clone NameB6Ng01-253E02
Chromosome1 (Build37)
Map Location 104,960,156 - 104,961,256
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041056, LOC100041067
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253E02.bB6Ng01-253E02.g
ACCGA060040GA060041
length1,1751,097
definitionB6Ng01-253E02.b B6Ng01-253E02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tgcacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgcggggaaagaggaacactactccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactacccgaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaagacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaaccctgat
gcccctcaatagaggaatggatacagaaaatgtggtacatctacataatg
gcgtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggtgggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtattcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatccctctccttagaagtgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgcaggggtctagcaaac
acagaagtgggatgctcacagtcagctaatggatggatcacagggctccc
aatggagagctagagaaagtacccaagagctaaacggtctgcaaccctat
agtggacatatatgactattacctgagctctgactctagctgcatatgta
tcaaagatgcctagtcggcgatcactgaaggaagccattgactgccaact
ttatatggctcagtacaggaacgcaagtccaaaaggcaatggggcgatat
gggtactgctatccctttctctcgt

gaattctcagtcatctctacctggatccaggaccatcactttaagaactc
tgacaaaagtctggctctgtcagacaaacgtctttcttccagtcttagat
acttttgtattactattgaagggacatcacaaccaatacaacttataaaa
taaaccatgtggtgggttttgtttatagtttcagagtgtgaatccatgac
tgtcatggtggggatcatgggtgtaagcagagactgctgaagctgagttc
ttgtacctgatcaacaagttgaggaagggagattgaggagagaaaaaaga
aagagagagaaaagagagaaataacctggtgtggtcttttgcaaccttat
tgcccacccttgatgatatatctccaaacattcctactccaacaaggaca
cacctcataaatccctcagttctaccaaagaggtagcaagctttcaaaca
tatgatcctatagtgccattctcattaaagccatgaatccttgggaaatg
actgtcactgtagttaactgcagaattagattggctactagtctttacct
ctgaagtcaagctctttgaagacacttaaccctgaccctgaaatcattac
catttttttaaataaaagtttccctaaatcccaggaggcccttatcaacc
ttctaatgggaacattgtttgaaaagatctgaaaatataaagttctaaaa
aaaaatactcttaaaagagctattagggtaattgaatttatgaaaactgt
tttctccctcttccaagggctcattaagggaggagtctgtatagaaaagg
tcattgtgaagaaaaagagaggaatcaagctgtaattgtagttatggtta
tggaaaatgatggttctagccagtcaggacctttccttcaggagggatgg
tgagataaaggttattataataggaaattctgactttacctacaccagaa
agttacacatttgttcctcacttgacttgtagccattgcttctcttctct
tctgaccaggaaataagttgctacacagtatatgtttgtaacagaacata
catgatatgtgtgcatgccatacctacatacatctctcttagatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_104960156_104961256
seq2: B6Ng01-253E02.g_62_1158 (reverse)

seq1  AATATCCTAAGAGGAGATGTATGTAGTATTTGCATGCACACATATTCATG  50
      ||||| |||||| |||||||||||||   | ||||||||||||| |||||
seq2  AATAT-CTAAGA-GAGATGTATGTAGGTATGGCATGCACACATA-TCATG  47

seq1  TATG-TCTG-TACAAACATATTACTGTGTACCACTTTATTTCCTGGGTCA  98
      |||| |||| |||||||||| ||||||||| ||  ||||||||| |||||
seq2  TATGTTCTGTTACAAACATA-TACTGTGTAGCAACTTATTTCCT-GGTCA  95

seq1  GAA-AGAAGAGAGAAAGCAATGGCTAC-AGTC-AGTGAGAACAAAATGTG  145
      ||| |||||||   ||||||||||||| |||| |||||| |  |||||||
seq2  GAAGAGAAGAG---AAGCAATGGCTACAAGTCAAGTGAGGAACAAATGTG  142

seq1  GTACTTTCTGGTGTAGGTAAAGTCAGAATTTCCTATTAATAATAACCTTT  195
        ||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TAACTTTCTGGTGTAGGTAAAGTCAGAATTTCCTATT-ATAATAACCTTT  191

seq1  ATCTCACCATCCCTCCTGAAGGAAAGGTCCTGACTGGCTAGAACCATCAT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACCATCCCTCCTGAAGGAAAGGTCCTGACTGGCTAGAACCATCAT  241

seq1  TTTCCATAACCATAACTACAATTACAGCTTGATTCCTCTCTTTTTCTTCA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATAACCATAACTACAATTACAGCTTGATTCCTCTCTTTTTCTTCA  291

seq1  CAATGACCTTTTCTATACAGACTCCTCCCTTAATGAGCCCTTGGAAGAGG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACCTTTTCTATACAGACTCCTCCCTTAATGAGCCCTTGGAAGAGG  341

seq1  GAGAAAACAGTTTTCATAAATTCAATTACCCTAATAGCTCTTTTAAGAGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAACAGTTTTCATAAATTCAATTACCCTAATAGCTCTTTTAAGAGT  391

seq1  ATTTTTTTTTAGAACTTTATATTTTCAGATCTTTTCAAACAATGTTCCCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTTAGAACTTTATATTTTCAGATCTTTTCAAACAATGTTCCCA  441

seq1  TTAGAAGGTTGATAAGGGCCTCCTGGGATTTAGGGAAACTTTTATTTAAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGGTTGATAAGGGCCTCCTGGGATTTAGGGAAACTTTTATTTAAA  491

seq1  AAAATGGTAATGATTTCAGGGTCAGGGTTAAGTGTCTTCAAAGAGCTTGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGTAATGATTTCAGGGTCAGGGTTAAGTGTCTTCAAAGAGCTTGA  541

seq1  CTTCAGAGGTAAAGACTAGTAGCCAATCTAATTCTGCAGTTAACTACAGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAGGTAAAGACTAGTAGCCAATCTAATTCTGCAGTTAACTACAGT  591

seq1  GACAGTCATTTCCCAAGGATTCATGGCTTTAATGAGAATGGCACTATAGG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTCATTTCCCAAGGATTCATGGCTTTAATGAGAATGGCACTATAGG  641

seq1  ATCATATGTTTGAAAGCTTGCTACCTCTTTGGTAGAACTGAGGGATTTAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATGTTTGAAAGCTTGCTACCTCTTTGGTAGAACTGAGGGATTTAT  691

seq1  GAGGTGTGTCCTTGTTGGAGTAGGAATGTTTGGAGATATATCATCAAGGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGTGTCCTTGTTGGAGTAGGAATGTTTGGAGATATATCATCAAGGG  741

seq1  TGGGCAATAAGGTTGCAAAAGACCACACCAGGTTATTTCTCTCTTTTCTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAATAAGGTTGCAAAAGACCACACCAGGTTATTTCTCTCTTTTCTC  791

seq1  TCTCTTTCTTTTTTCTCTCCTCAATCTCCCTTCCTCAACTTGTTGATCAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCTTTTTTCTCTCCTCAATCTCCCTTCCTCAACTTGTTGATCAG  841

seq1  GTACAAGAACTCAGCTTCAGCAGTCTCTGCTTACACCCATGATCCCCACC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAGAACTCAGCTTCAGCAGTCTCTGCTTACACCCATGATCCCCACC  891

seq1  ATGACAGTCATGGATTCACACTCTGAAACTATAAACAAAACCCACCACAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGTCATGGATTCACACTCTGAAACTATAAACAAAACCCACCACAT  941

seq1  GGTTTATTTTATAAGTTGTATTGGTTGTGATGTCCCTTCAATAGTAATAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTATTTTATAAGTTGTATTGGTTGTGATGTCCCTTCAATAGTAATAC  991

seq1  AAAAGTATCTAAGACTGGAAGAAAGACGTTTGTCTGACAGAGCCAGACTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTATCTAAGACTGGAAGAAAGACGTTTGTCTGACAGAGCCAGACTT  1041

seq1  TTGTCAGAGTTCTTAAAGTGATGGTCCTGGATCCAGGTAGAGATGACTGA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGAGTTCTTAAAGTGATGGTCCTGGATCCAGGTAGAGATGACTGA  1091

seq1  GAATTC  1101
      ||||||
seq2  GAATTC  1097


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