BAC Information

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BAC

Clone NameB6Ng01-253I20
Chromosome1 (Build37)15 (Build37)
Map Location 147,552,399 - 147,553,02664,788,367 - 64,788,416
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneRgs18, LOC667877, LOC625057, LOC383570
Downstream geneLOC383571, B830045N13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253I20.bB6Ng01-253I20.g
ACCGA060252GA060253
length1,002602
definitionB6Ng01-253I20.b B6Ng01-253I20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(147,552,399 - 147,553,026)(64,788,367 - 64,788,416)
sequence
gaattcatatatccttttgttttcttttgtttttctacaaaatgggtatt
catttcggtacatgaaaagaaatctggtgtaggctacctccaaaaggaga
gaaaatttctgagtatgtttaaacatgccaattttgatcttagccattct
gactggtgtaaggtggaatctcagggttgttttgatttgcatttctctga
tgattaaggatgctgaacatttttcaggtgcttctcagtcattcggtatt
cctcaggtgagaattctttgtttaggtctgagccccatttttaatggggt
tatttgattttctggagtccaccttcttgagttctttatatatattggat
attagtcccctatctgatttaggataggtaaagatcctttcacaatctgt
tggtggcctttctgtcttattgacggtgtctttttccttacagaagcttt
gcaattttatgaggtcacatttgtcgattcttgcttttacagcacaagcc
attgctgtcctattcaggaatttttcccctgtgtccatctctttgaggct
tttccccactttctcctctataagtttcactgtctctggttcttcttgtg
gagaaagtggaacactcctccactgttggtcagattgcaagcttgtacaa
ccactctggaaatcagtctggcagttcctcagaaaattggacatagtact
accgaaggatccagcaatacctctcctgggcatatatccagaagatgttc
caactggtaagaaaggacacatgctccactatgttcatagcagccttatt
tgtaatagccagaagctggaaagaacccagacgcccctcaacagaggaat
ggatacagaaaatgtagtacaatacacaatggagtactattcagctatta
aaaagaatgaatttatgaaattcctaggcaaatggatggacctgaacagc
atcctcctgagtaaggtaacccaatcacaaagactcacatgatatgtact
ca

gaattctctatttagctctttaaactatttttaaatttaggttatgtggg
ttgttgatgtttaacatcttgagttgtttataaattttggatattatctc
tatgttagatgttgagcttcccatgtgtagatagcgaagactttcccaat
ctgtaggttgcccttttgtcctactgatagtgtccttttctttacagaaa
cttttagtttcatgtggtcccatttattaattgttgatcttagggtctta
gtcattgttgttctgttcagaaggttttctcctgtaacaaggagttgaat
ggtagaatggctactccagcttgcttcttagatctatctgctttgaaaat
tagtccagtcctcttctctgaagtaatgtctaactttaatgctgaggtgt
gtttcttgtatgctgcagaatgaaggatcctgttttagcatccatagtgt
tagtctatgtcttcttattggggaattgagtccatttatgttgagattaa
tgatcagttattgttacttccttttattttaatgttggtagtttaaataa
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagcataaaaagta
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_147552399_147553026
seq2: B6Ng01-253I20.b_43_670

seq1  GAATTCATATATCCTTTTGTTTTCTTTTGTTTTTCTACAAAATGGGTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATATCCTTTTGTTTTCTTTTGTTTTTCTACAAAATGGGTATT  50

seq1  CATTTCGGTACATGAAAAGAAATCTGGTGTAGGCTACCTCCAAAAGGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCGGTACATGAAAAGAAATCTGGTGTAGGCTACCTCCAAAAGGAGA  100

seq1  GAAAATTTCTGAGTATGTTTAAACATGCCAATTTTGATCTTAGCCATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTTCTGAGTATGTTTAAACATGCCAATTTTGATCTTAGCCATTCT  150

seq1  GACTGGTGTAAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCTCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGTGTAAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCTCTGA  200

seq1  TGATTAAGGATGCTGAACATTTTTCAGGTGCTTCTCAGTCATTCGGTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAAGGATGCTGAACATTTTTCAGGTGCTTCTCAGTCATTCGGTATT  250

seq1  CCTCAGGTGAGAATTCTTTGTTTAGGTCTGAGCCCCATTTTTAATGGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGTGAGAATTCTTTGTTTAGGTCTGAGCCCCATTTTTAATGGGGT  300

seq1  TATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGAT  350

seq1  ATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCACAATCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCACAATCTGT  400

seq1  TGGTGGCCTTTCTGTCTTATTGACGGTGTCTTTTTCCTTACAGAAGCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCCTTTCTGTCTTATTGACGGTGTCTTTTTCCTTACAGAAGCTTT  450

seq1  GCAATTTTATGAGGTCACATTTGTCGATTCTTGCTTTTACAGCACAAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTTATGAGGTCACATTTGTCGATTCTTGCTTTTACAGCACAAGCC  500

seq1  ATTGCTGTCCTATTCAGGAATTTTTCCCCTGTGTCCATCTCTTTGAGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGTCCTATTCAGGAATTTTTCCCCTGTGTCCATCTCTTTGAGGCT  550

seq1  TTTCCCCACTTTCTCCTCTATAAGTTTCACTGTCTCTGGTTCTTCTTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCACTTTCTCCTCTATAAGTTTCACTGTCTCTGGTTCTTCTTGTG  600

seq1  GAGAAAGTGGAACACTCCTCCACTGTTG  628
      ||||||||||||||||||||||||||||
seq2  GAGAAAGTGGAACACTCCTCCACTGTTG  628


seq1: chr15_64788367_64788416
seq2: B6Ng01-253I20.g_616_667 (reverse)

seq1  TTTAC--TTCACAGTCACACACACACACACACACACACACACACACACAC  48
      |||||  || |   ||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTTTATGCTCACACACACACACACACACACACACACACACACAC  50

seq1  AC  50
      ||
seq2  AC  52


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