BAC Information

Click to search

BAC

Clone NameB6Ng01-256C01
Chromosome1 (Build37)
Map Location 92,685,035 - 92,823,370
singlet/doubletdoublet
Overlap geneCol6a3, Mlph
Upstream geneCentg2, Gbx2, Asb18, Iqca, Cxcr7, Cops8
Downstream genePrlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1, Twist2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256C01.bB6Ng01-256C01.g
ACCGA062166GA062167
length797988
definitionB6Ng01-256C01.b B6Ng01-256C01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,685,035 - 92,685,828)(92,822,666 - 92,823,370)
sequence
gaattcagggaactatactatgtgaaagaagccaaacataaaatccacct
atcaagtgataccatttatatgaaatgtccagaacaggcaaattcacaaa
gacagggagaccagtgtgggccagaggtagggagcatcagggttgagggt
taccggggtggggaggggcagtaaagaggaggggcagtagggattagtgg
cagctggggtggggcaataggaatggagggcaatagggatggagggcact
aggggttaaatgtgacagacgttagggcgacaggtgtggggtctataagg
gtgagggaagatgtggaaatggcagaggtggaggacaatttgaagttgat
gggggccccaaaggtagagagcaatagacagcgactatacattgcttcct
ttggggttaataaaacatttttaaattattacacaatacagtgagtgctc
tgagtgctgtggaatcatcgctagaggcagaatctgtgtctcgtgaccat
caccttaatttaagacaaagccaccaaggatctaggagatactacaaggc
ctgtgtcatgccaggatactgacctgtgagcctctggtaccctgctcgcc
ttcgaagcctggctggccaggaccacctctgttgcccttggaaacaagac
aagcaggtaaaccaaaccagctctctgctctggactggggaaaggggacc
ctcacacaggtcagcagcctgtcttctctgagcctgcacaattgtcactt
tgccctgtttcacggggacagctttgataaacaaggatgttttggac
gaattctaagttcgagcctggtctacagagcaaggtccaggacagtcaga
gcaacacagagaaatctggtctcgaaaaaaaacaaaaataaatcgaccaa
ccaaacaaaaacacaaaacaaaacaaaacaacccccccccaaccaacaca
acaagaaaccaaacccctcccccaagccccaaacaaataaacaaacaaaa
gttctatctcttcctcccctctcatgatcccttttctagttttgtgacct
agaaacacacaaacataaacacacatagatgcataaaaatgtaaactctt
gtctttctcagtctgcctgctttcacttaacaaagatttatggttgcacc
catttttctgcaaacaacatgatttcaattttcttcatggctgcataaaa
ttccattgtgtagataaccacatattccttatggattcatctgttgatgg
tcatctagactggctccattttctgggtatttcaaacacggaagcagtcc
cacggatgtgcaagtgtttctgtggtgctgactgagaatcctttggctat
gtgcccaggcaggtctggcatagctagctgagatctttttaaaggaacct
ccatattggcttccacagtagccacaaccagtctatgtttacgccagcag
caaacaagggcgcctcttctccacagccttgccagagtttgctgccagtt
gtttttctcagtggtagccattctgactgggatgagatgggatctcaaag
cagtttttgtttgcatttccctgacgcccaaggattcgatcacccttttg
cagtatctacggtgtttacagttcttttgagagctctctctataaaaagc
attagcccacttagtgatcgctgatttgggtttttggtatttaattttta
tagttcttgtgatgtatttttataactattctactctatttcatatttag
ctttgctgtatctcttcctgtccctgatctatggactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_92685035_92685828
seq2: B6Ng01-256C01.b_44_840

seq1  GAATTCAGGGAACTATACTATGTGAAAGAAGCCAAACATAAAATCCACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGAACTATACTATGTGAAAGAAGCCAAACATAAAATCCACCT  50

seq1  ATCAAGTGATACCATTTATATGAAATGTCCAGAACAGGCAAATTCACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTGATACCATTTATATGAAATGTCCAGAACAGGCAAATTCACAAA  100

seq1  GACAGGGAGACCAGTGTGGGCCAGAGGTAGGGAGCATCAGGGTTGAGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGAGACCAGTGTGGGCCAGAGGTAGGGAGCATCAGGGTTGAGGGT  150

seq1  TACCGGGGTGGGGAGGGGCAGTAAAGAGGAGGGGCAGTAGGGATTAGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGGGGTGGGGAGGGGCAGTAAAGAGGAGGGGCAGTAGGGATTAGTGG  200

seq1  CAGCTGGGGTGGGGCAATAGGAATGGAGGGCAATAGGGATGGAGGGCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGGGTGGGGCAATAGGAATGGAGGGCAATAGGGATGGAGGGCACT  250

seq1  AGGGGTTAAATGTGACAGACGTTAGGGCGACAGGTGTGGGGTCTATAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTAAATGTGACAGACGTTAGGGCGACAGGTGTGGGGTCTATAAGG  300

seq1  GTGAGGGAAGATGTGGAAATGGCAGAGGTGGAGGACAATTTGAAGTTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGAAGATGTGGAAATGGCAGAGGTGGAGGACAATTTGAAGTTGAT  350

seq1  GGGGGCCCCAAAGGTAGAGAGCAATAGACAGCGACTATACATTGCTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCCCCAAAGGTAGAGAGCAATAGACAGCGACTATACATTGCTTCCT  400

seq1  TTGGGGTTAATAAAACATTTTTAAATTATTACACAATACAGTGAGTGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTTAATAAAACATTTTTAAATTATTACACAATACAGTGAGTGCTC  450

seq1  TGAGTGCTGTGGAATCATCGCTAGAGGCAGAATCTGTGTCTCGTGACCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCTGTGGAATCATCGCTAGAGGCAGAATCTGTGTCTCGTGACCAT  500

seq1  CACCTTAATTTAAGACAAAGCCACCAAGGATCTAGGAGATACTACAAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTAATTTAAGACAAAGCCACCAAGGATCTAGGAGATACTACAAGGC  550

seq1  CTGTGTCATGCCAGGATACTGACCTGTGAGCCTCTGGTACCCTGCTCGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCATGCCAGGATACTGACCTGTGAGCCTCTGGTACCCTGCTCGCC  600

seq1  TTCGAAGCCTGGCTGGCCAGGACCACCTCTGTTGCCCTTGGAAACAAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAAGCCTGGCTGGCCAGGACCACCTCTGTTGCCCTTGGAAACAAGAC  650

seq1  AAGCAGGTAAACCAAACCAGCTCTCTGCTCTGGACTGGGGAAAGGGGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGTAAACCAAACCAGCTCTCTGCTCTGGACTGGGGAAAGGGGACC  700

seq1  CTCACACAGGTCAGCAGCCTGTC-TCTCTGAGCCTGCACAAATTGTCACT  749
      ||||||||||||||||||||||| ||||||||||||||| ||||||||||
seq2  CTCACACAGGTCAGCAGCCTGTCTTCTCTGAGCCTGCAC-AATTGTCACT  749

seq1  T--GCCTGTTTCAC-GGGACAGCTTTGATAAACAAGGATGTTTTGGAC  794
      |   |||||||||| |||||||||||||||||||||||||||||||||
seq2  TTGCCCTGTTTCACGGGGACAGCTTTGATAAACAAGGATGTTTTGGAC  797

seq1: chr1_92822666_92823370
seq2: B6Ng01-256C01.g_65_769 (reverse)

seq1  AAAACAACTGGCAGCAAACTCTGGCAAGGCTGTGGAGAAGAGGCGCCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACTGGCAGCAAACTCTGGCAAGGCTGTGGAGAAGAGGCGCCCTT  50

seq1  GTTTGCTGCTGGCGTAAACATAGACTGGTTGTGGCTACTGTGGAAGCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTGCTGGCGTAAACATAGACTGGTTGTGGCTACTGTGGAAGCCAA  100

seq1  TATGGAGGTTCCTTTAAAAAGATCTCAGCTAGCTATGCCAGACCTGCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGGTTCCTTTAAAAAGATCTCAGCTAGCTATGCCAGACCTGCCTG  150

seq1  GGCACATAGCCAAAGGATTCTCAGTCAGCACCACAGAAACACTTGCACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATAGCCAAAGGATTCTCAGTCAGCACCACAGAAACACTTGCACAT  200

seq1  CCGTGGGACTGCTTCCGTGTTTGAAATACCCAGAAAATGGAGCCAGTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGGGACTGCTTCCGTGTTTGAAATACCCAGAAAATGGAGCCAGTCTA  250

seq1  GATGACCATCAACAGATGAATCCATAAGGAATATGTGGTTATCTACACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACCATCAACAGATGAATCCATAAGGAATATGTGGTTATCTACACAA  300

seq1  TGGAATTTTATGCAGCCATGAAGAAAATTGAAATCATGTTGTTTGCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTTTATGCAGCCATGAAGAAAATTGAAATCATGTTGTTTGCAGAA  350

seq1  AAATGGGTGCAACCATAAATCTTTGTTAAGTGAAAGCAGGCAGACTGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGTGCAACCATAAATCTTTGTTAAGTGAAAGCAGGCAGACTGAGA  400

seq1  AAGACAAGAGTTTACATTTTTATGCATCTATGTGTGTTTATGTTTGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAGAGTTTACATTTTTATGCATCTATGTGTGTTTATGTTTGTGTG  450

seq1  TTTCTAGGTCACAAAACTAGAAAAGGGATCATGAGAGGGGAGGAAGAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGGTCACAAAACTAGAAAAGGGATCATGAGAGGGGAGGAAGAGAT  500

seq1  AGAACTTTTGTTTGTTTATTTGTTTGGGGCTTGGGGGAGGGGTTTGGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTTTGTTTGTTTATTTGTTTGGGGCTTGGGGGAGGGGTTTGGTTT  550

seq1  CTTGTTGTGTTGGTTGGGGGGGGGTTGTTTTGTTTTGTTTTGTGTTTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGTGTTGGTTGGGGGGGGGTTGTTTTGTTTTGTTTTGTGTTTTTG  600

seq1  TTTGGTTGGTCGATTTATTTTTGTTTTTTTTCGAGACCAGATTTCTCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTGGTCGATTTATTTTTGTTTTTTTTCGAGACCAGATTTCTCTGT  650

seq1  GTTGCTCTGACTGTCCTGGACCTTGCTCTGTAGACCAGGCTCGAACTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTCTGACTGTCCTGGACCTTGCTCTGTAGACCAGGCTCGAACTTAG  700

seq1  AATTC  705
      |||||
seq2  AATTC  705