BAC Information

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BAC

Clone NameB6Ng01-256C20
Chromosome1 (Build37)
Map Location 87,547,460 - 87,668,089
singlet/doubletdoublet
Overlap geneSp100, A630001G21Rik
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110, Sp140
Downstream geneCab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256C20.bB6Ng01-256C20.g
ACCGA062204GA062205
length1,166667
definitionB6Ng01-256C20.b B6Ng01-256C20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,666,919 - 87,668,089)(87,547,460 - 87,548,126)
sequence
gaattcaagccacagatcttgatgagccacagtgtgtatgcatgttcgat
gttaagtgtctctttacttgtattatttctggtcctaaaacaagagaaaa
gctgggtttaatggaacccagactcgccaggttggggaaagggggattgg
gcgcatgtgcgcacgcacgcacgcacgcacgcacgcacgcacgcacgcac
gcacgcacgcacgatgaaaacaaaaacaagacaacaactctgaaactcat
ggactgcttctctggcttccccgcaaacattgtgtcactggcagaccacc
aagttcctcaagatgatgtgtgcccctcagggctggatcctgccctgtcc
gcatgttcattgccagtttggtcactcaggacctgaagcctcaccccgct
gagttcttctaaagcagtggaatctccctcctactcctctgcctggttct
cagtcgcgctcagttcccacctcaggtgctgcctcagagaggacgcttac
ctcaagggcatctttgagaacgttcttgaagataagaactgtgggaccct
atctggatatcttatatccccagcacaatgcctgaagcagagggaacagg
ctctgtggatgtgttgtcacggtggcacaatgactctcttgggtctagcc
atttataggatactttctgttgttcaccagaatgttctaactggtccatt
aaatgtgtgtgcttgaaccaaacagagctagtcattataagatgatttcg
gttcggggttctcactttctccgtgttggcatcctctgcttctctgtccc
cagcctaaacattttttttttccaactgaataaatgaatgttggtcaggt
tgtattggatctgtagatctcaggagaggctcagaatctcaacaaagttc
cctaggttggtgattcatcccagtggctcgtgatctgttcctagtggagt
tctgggaaccttctgcggcagcaagtggttgctttgtgaaagtccagttt
cctgggcatcttcatgtcagacccctgagatccagaccacactgcatttt
cataaagcagcccctgggagactctcaatgacactcaagccaaggaacta
ctggggaggaagtgagaccaagtccatgtgctctgactcactggtgctcc
aggccgtgcgcctgaa
gaattctgtttgctccagtaactcagatgcgctactatgcataaataatg
ttgggcagtgtttttgttagtacgaaggacgtaatacattttttttttca
gtactgcagatgaacctcggactttgaatatgcctgattatatatctcta
tttattttttagaactttgactcaaggttttgctaagttactcacaccag
tgtggaactcattgtataggttaggctgaccttgaacttgtgagcctctg
agtgactgaggttacaggcctagaccaccaggaccatttcataataaaat
gtggtttataagctttcaaacttgtggaaatatagaaaggataagacccc
tcagctgcccccatatacttagcccactccttgggctcaatcttccttat
attatttattttttattttaaggcacggtctcttgatcttttttattatg
ttgtccaggctgacctgaaacttgctatgtaaacctgcctggacttggac
ttacaatagagatccatctgcctctgcctcccaagtacagggattaaagg
tgtacaataccatacctgggtctttcttattgtctacaaaatatttattg
ggtctcgcgcgtgcgtgcatgcgtgcgtgcgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_87666919_87668089
seq2: B6Ng01-256C20.b_45_1210 (reverse)

seq1  TTCA-GCGCA-GGCCTGGGAGGCCACAGTGAGTCAGAGGCACATGAACTT  48
      |||| ||||| |||||||   ||  |||||||||||| ||||||| ||||
seq2  TTCAGGCGCACGGCCTGG--AGCACCAGTGAGTCAGA-GCACATGGACTT  47

seq1  GGTCTTCACTTCCTTCCCCAAGTGGTCCTGGCTTTAAGTGTTCATGAGAG  98
      |||| |||||||| ||||||   | |||| |  || |||||   ||||||
seq2  GGTC-TCACTTCC-TCCCCAGTAGTTCCTTGGCTTGAGTGTCATTGAGAG  95

seq1  TCTCCCA-GGGCTGCTTTATGAAAATGCAGTGTTGGGTCTGGATCTCAGG  147
      ||||||| |||||||||||||||||||||||||  |||||||||||||||
seq2  TCTCCCAGGGGCTGCTTTATGAAAATGCAGTGT--GGTCTGGATCTCAGG  143

seq1  GGTTCTGACATGAAGATGCCCAGGAAACTGGACTTTCACAAAGC-ACCAC  196
      || ||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GG-TCTGACATGAAGATGCCCAGGAAACTGGACTTTCACAAAGCAACCAC  192

seq1  TTGCTGCCGCAGAAGGTTCCCAGAACTCCACTAGGAACAGATCACGAGCC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGCCGCAGAAGGTTCCCAGAACTCCACTAGGAACAGATCACGAGCC  242

seq1  ACTGGGATGAATCACCAACCTAGGGAACTTTGTTGAGATTCCTGAGCCTC  296
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACTGGGATGAATCACCAACCTAGGGAACTTTGTTGAGATT-CTGAGCCTC  291

seq1  TCCTGAGATCTACAGATCCAATACAACCTGACCAACATTCATTTATTCAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGATCTACAGATCCAATACAACCTGACCAACATTCATTTATTCAG  341

seq1  TTGG-AAAAAAAAATGTTTAGGCTGGGGACAGAGAAGCAGAGGATGCCAA  395
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAAAAAAAATGTTTAGGCTGGGGACAGAGAAGCAGAGGATGCCAA  391

seq1  CACGGAGAAAGTGAGAACCCCGAACCGAAATCATCTTATAATGACTAGCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGAGAAAGTGAGAACCCCGAACCGAAATCATCTTATAATGACTAGCT  441

seq1  CTGTTTGGTTCAAGCACACACATTTAATGGACCAGTTAGAACATTTCTGG  495
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTGTTTGGTTCAAGCACACACATTTAATGGACCAGTTAGAACA-TTCTGG  490

seq1  TGAACAACAGAAAGTATCCTATAAATGGCTAGACCCAAGAGAGTCATTGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAACAGAAAGTATCCTATAAATGGCTAGACCCAAGAGAGTCATTGT  540

seq1  GCCACCGTGACAACACATCCACAGAGCCTGTTCCCTCTGCTTCAGGCATT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCGTGACAACACATCCACAGAGCCTGTTCCCTCTGCTTCAGGCATT  590

seq1  GTGCTGGGGATATAAGATATCCAGATAGGGTCCCACAGTTCTTATCTTCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGGATATAAGATATCCAGATAGGGTCCCACAGTTCTTATCTTCA  640

seq1  AGAACGTTCTCAAAGATGCCCTTGAGGTAAGCGTCCTCTCTGAGGCAGCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACGTTCTCAAAGATGCCCTTGAGGTAAGCGTCCTCTCTGAGGCAGCA  690

seq1  CCTGAGGTGGGAACTGAGCGCGACTGAGAACCAGGCAGAGGAGTAGGAGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGTGGGAACTGAGCGCGACTGAGAACCAGGCAGAGGAGTAGGAGG  740

seq1  GAGATTCCACTGCTTTAGAAGAACTCAGCGGGGTGAGGCTTCAGGTCCTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCCACTGCTTTAGAAGAACTCAGCGGGGTGAGGCTTCAGGTCCTG  790

seq1  AGTGACCAAACTGGCAATGAACATGCGGACAGGGCAGGATCCAGCCCTGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACCAAACTGGCAATGAACATGCGGACAGGGCAGGATCCAGCCCTGA  840

seq1  GGGGCACACATCATCTTGAGGAACTTGGTGGTCTGCCAGTGACACAATGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCACACATCATCTTGAGGAACTTGGTGGTCTGCCAGTGACACAATGT  890

seq1  TTGCGGGGAAGCCAGAGAAGCAGTCCATGAGTTTCAGAGTTGTTGTCTTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGGGGAAGCCAGAGAAGCAGTCCATGAGTTTCAGAGTTGTTGTCTTG  940

seq1  TTTTTGTTTTCATCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTCATCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGC  990

seq1  GTGCGTGCGTGCGTGCGCACATGCGCCCAATCCCCCTTTCCCCAACCTGG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGTGCGTGCGTGCGCACATGCGCCCAATCCCCCTTTCCCCAACCTGG  1040

seq1  CGAGTCTGGGTTCCATTAAACCCAGCTTTTCTCTTGTTTTAGGACCAGAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTCTGGGTTCCATTAAACCCAGCTTTTCTCTTGTTTTAGGACCAGAA  1090

seq1  ATAATACAAGTAAAGAGACACTTAACATCGAACATGCATACACACTGTGG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACAAGTAAAGAGACACTTAACATCGAACATGCATACACACTGTGG  1140

seq1  CTCATCAAGATCTGTGGCTTGAATTC  1171
      ||||||||||||||||||||||||||
seq2  CTCATCAAGATCTGTGGCTTGAATTC  1166

seq1: chr1_87547460_87548126
seq2: B6Ng01-256C20.g_67_733

seq1  GAATTCTGTTTGCTCCAGTAACTCAGATGCGCTACTATGCATAAATAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTGCTCCAGTAACTCAGATGCGCTACTATGCATAAATAATG  50

seq1  TTGGGCAGTGTTTTTGTTAGTACGAAGGACGTAATACATTTTTTTTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCAGTGTTTTTGTTAGTACGAAGGACGTAATACATTTTTTTTTTCA  100

seq1  GTACTGCAGATGAACCTCGGACTTTGAATATGCCTGATTATATATCTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGCAGATGAACCTCGGACTTTGAATATGCCTGATTATATATCTCTA  150

seq1  TTTATTTTTTAGAACTTTGACTCAAGGTTTTGCTAAGTTACTCACACCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTTAGAACTTTGACTCAAGGTTTTGCTAAGTTACTCACACCAG  200

seq1  TGTGGAACTCATTGTATAGGTTAGGCTGACCTTGAACTTGTGAGCCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAACTCATTGTATAGGTTAGGCTGACCTTGAACTTGTGAGCCTCTG  250

seq1  AGTGACTGAGGTTACAGGCCTAGACCACCAGGACCATTTCATAATAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTGAGGTTACAGGCCTAGACCACCAGGACCATTTCATAATAAAAT  300

seq1  GTGGTTTATAAGCTTTCAAACTTGTGGAAATATAGAAAGGATAAGACCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTATAAGCTTTCAAACTTGTGGAAATATAGAAAGGATAAGACCCC  350

seq1  TCAGCTGCCCCCATATACTTAGCCCACTCCTTGGGCTCAATCTTCCTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGCCCCCATATACTTAGCCCACTCCTTGGGCTCAATCTTCCTTAT  400

seq1  ATTATTTATTTTTTATTTTAAGGCACGGTCTCTTGATCTTTTTTATTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTATTTTTTATTTTAAGGCACGGTCTCTTGATCTTTTTTATTATG  450

seq1  TTGTCCAGGCTGACCTGAAACTTGCTATGTAAACCTGCCTGGACTTGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCAGGCTGACCTGAAACTTGCTATGTAAACCTGCCTGGACTTGGAC  500

seq1  TTACAATAGAGATCCATCTGCCTCTGCCTCCCAAGTACAGGGATTAAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATAGAGATCCATCTGCCTCTGCCTCCCAAGTACAGGGATTAAAGG  550

seq1  TGTACAATACCATACCTGGGTCTTTCTTATTGTCTACAAAATATTTATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAATACCATACCTGGGTCTTTCTTATTGTCTACAAAATATTTATTG  600

seq1  GGTCTCGCGCGTGCGTGCATGCGTGCGTGCGTGTGTGTGTGTGTGTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCGCGCGTGCGTGCATGCGTGCGTGCGTGTGTGTGTGTGTGTGTGT  650

seq1  GTGTGTGTGTGTGTGTG  667
      |||||||||||||||||
seq2  GTGTGTGTGTGTGTGTG  667