BAC Information

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BAC

Clone NameB6Ng01-256F11
Chromosome1 (Build37)
Map Location 104,403,879 - 104,505,325
singlet/doubletdoublet
Overlap geneLOC100041056
Upstream genenone
Downstream geneLOC100041067
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256F11.bB6Ng01-256F11.g
ACCGA062324GA062325
length8671,109
definitionB6Ng01-256F11.b B6Ng01-256F11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,504,710 - 104,505,325)(104,403,879 - 104,404,990)
sequence
gaattcatccatgttcccaatcatgactgtgtgaggggaagtgacatagt
tcctaaccctggagcttatgactgcataagtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgactgttcttgccccggagcaccttta
ggccattgaaaccatgagcctcacgtgtgctgataattgctgttgcctaa
aagttgatctgttgtctttactacacattcctacttactagagagtatac
atcctccattaccaagagctagtcatgacatagtaaataaaacagatgca
gttttcaggagtgaggaatggagatggtcatgaggctgtggaggatgatg
aacaggagttcagggtcatggtgaaggatttagataggcaatataatcat
aggagccataaaaacttacgtggtcctttttgtaaacggttcattgctag
acttggccttgaatttggaatcatgaagaagcacatgtaccttaaggtcc
aaagactgctccattgattagctaggatgaattaagagatattaaggata
gaggggaaagggtatgggtagaaaaataggtatttatatacaatctatgg
ataaatagtactagatggagagtacatgaggatatagaattgctaggata
aggaaatgaagaatagagaattaaatatgctgtagaagcgtataacaggt
tagtgttctgttttttctcgctgattgaagaaattaagataacattgcct
gaaaagatattagagagagctgttttattgtttataatttcaaacattgt
aaggaatcattttaattttaatagtttgtatttttttttctatttttata
tttgaatgcagttacta
gaattcttctcattggccaaagagtcatacacaggcttaatactgctgta
tatctaataaaaatggttagtcccaggttcagaaagagagatactgtacc
aaaaacataaggcaaagaataattgagaaggatcttggacactgacctct
gccatgcaaaatcaagcaacacatacaagtgagcaaatacacacacacac
acacacacacacacacacacacacacacacacacatgcacacatgcatgc
tcacatctcacatgcatataatttcttatctccctctaatagaaaattgt
aactagtcattgagaatacatacagattctccactttttcttgccagcag
cagtttgtatgcaggtttaaataaacaaattatacccttgtaagagtcct
actcccatctgtgacatctctgaggtcatgaagtcaaatgaatgctaatg
aatatggatgggaagactttttactgtgagacctttcatgtcagcatgct
aagaaaaatacattcaagtaccaaaaggaaaacaaaatacaacaatgttt
aattaacttttatgaaaatggaaaagcaatgtattagactgtcttagtaa
ttataactttaagtctgtacatagattgtatttctgcaaagttcttagtg
atttaactaaagtttattttctgtacttgctcatgttcaaattagactac
aaattgcattagcttttctattacgctgagattatgatatttttattcat
tttcaataaaattgtttctttgtaaaaaaaaaactcaaagacattcaaaa
ggtttgggaagattttttttcaatataaggacaagtttcaaaaggcaaac
aggtttttgggttttgtttgtttgtttgagacagggtttctctgtgtagc
cctggctgtcctggaactcactctgtagaccaggttgggccttgaactca
gaaatctgtctgcctctgcctcccaagtgctgggattaaaagccgtgtgc
caccacgcctggcccacaattttattttttttagcttagttttgttttat
tgttttgatgaattatttttcttatttaacacttaatgttaatccccttt
caagtatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_104504710_104505325
seq2: B6Ng01-256F11.b_293_912 (reverse)

seq1  TAGTAACTGCAT--CAATATAAAAATAG-AAAAAAAATACAAACTATTAA  47
      ||||||||||||   ||||||||||||| |||||||||||||||||||||
seq2  TAGTAACTGCATTCAAATATAAAAATAGAAAAAAAAATACAAACTATTAA  50

seq1  AATTAAAATGATTCCTTACAATGTTTTGAATTTAT-AACAATAAAACAGC  96
      ||||||||||||||||||||||| |||||| |||| ||||||||||||||
seq2  AATTAAAATGATTCCTTACAATG-TTTGAAATTATAAACAATAAAACAGC  99

seq1  TCTCTCTAATATCTTTTCAGGCATTGTTATCTTAATTTCTTCAATCAGCG  146
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCTCTCTAATATCTTTTCAGGCAATGTTATCTTAATTTCTTCAATCAGCG  149

seq1  AG-AAAAACAGAACACTAACCTGTTATACGCTTCTACAGCATATTTAATT  195
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAACAGAACACTAACCTGTTATACGCTTCTACAGCATATTTAATT  199

seq1  CTCTATTCTTCATTTCCTTATCCTAGCAATTCTATATCCTCATGTACTCT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTCTTCATTTCCTTATCCTAGCAATTCTATATCCTCATGTACTCT  249

seq1  CCATCTAGTACTATTTATCCATAGATTGTATATAAATACCTATTTTTCTA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTAGTACTATTTATCCATAGATTGTATATAAATACCTATTTTTCTA  299

seq1  CCCATACCCTTTCCCCTCTATCCTTAATATCTCTTAATTCATCCTAGCTA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATACCCTTTCCCCTCTATCCTTAATATCTCTTAATTCATCCTAGCTA  349

seq1  ATCAATGGAGCAGTCTTTGGACCTTAAGGTACATGTGCTTCTTCATGATT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGGAGCAGTCTTTGGACCTTAAGGTACATGTGCTTCTTCATGATT  399

seq1  CCAAATTCAAGGCCAAGTCTAGCAATGAACCGTTTACAAAAAGGACCACG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTCAAGGCCAAGTCTAGCAATGAACCGTTTACAAAAAGGACCACG  449

seq1  TAAGTTTTTATGGCTCCTATGATTATATTGCCTATCTAAATCCTTCACCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTTTATGGCTCCTATGATTATATTGCCTATCTAAATCCTTCACCA  499

seq1  TGACCCTGAACTCCTGTTCATCATCCTCCACAGCCTCATGACCATCTCCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTGAACTCCTGTTCATCATCCTCCACAGCCTCATGACCATCTCCA  549

seq1  TTCCTCACTCCTGAAAACTGCATCTGTTTTATTTACTATGTCATGACTAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCACTCCTGAAAACTGCATCTGTTTTATTTACTATGTCATGACTAG  599

seq1  CTCTTGGTAATGGAGGATGTA  616
      |||||||||||||||||||||
seq2  CTCTTGGTAATGGAGGATGTA  620

seq1: chr1_104403879_104404990
seq2: B6Ng01-256F11.g_64_1172

seq1  GAATTCTTCTCATTGGCCAAAGAGTCATACACAGGCTTAATACTGCTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTCATTGGCCAAAGAGTCATACACAGGCTTAATACTGCTGTA  50

seq1  TATCTAATAAAAATGGTTAGTCCCAGGTTCAGAAAGAGAGATACTGTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAATAAAAATGGTTAGTCCCAGGTTCAGAAAGAGAGATACTGTACC  100

seq1  AAAAACATAAGGCAAAGAATAATTGAGAAGGATCTTGGACACTGACCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACATAAGGCAAAGAATAATTGAGAAGGATCTTGGACACTGACCTCT  150

seq1  GCCATGCAAAATCAAGCAACACATACAAGTGAGCAAATACACACACACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGCAAAATCAAGCAACACATACAAGTGAGCAAATACACACACACAC  200

seq1  ACACACACACACACACACACACACACACACACACATGCACACATGCATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACATGCACACATGCATGC  250

seq1  TCACATCTCACATGCATATAATTTCTTATCTCCCTCTAATAGAAAATTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCTCACATGCATATAATTTCTTATCTCCCTCTAATAGAAAATTGT  300

seq1  AACTAGTCATTGAGAATACATACAGATTCTCCACTTTTTCTTGCCAGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGTCATTGAGAATACATACAGATTCTCCACTTTTTCTTGCCAGCAG  350

seq1  CAGTTTGTATGCAGGTTTAAATAAACAAATTATACCCTTGTAAGAGTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGTATGCAGGTTTAAATAAACAAATTATACCCTTGTAAGAGTCCT  400

seq1  ACTCCCATCTGTGACATCTCTGAGGTCATGAAGTCAAATGAATGCTAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCATCTGTGACATCTCTGAGGTCATGAAGTCAAATGAATGCTAATG  450

seq1  AATATGGATGGGAAGACTTTTTACTGTGAGACCTTTCATGTCAGCATGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGATGGGAAGACTTTTTACTGTGAGACCTTTCATGTCAGCATGCT  500

seq1  AAGAAAAATACATTCAAGTACCAAAAGGAAAACAAAATACAACAATGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAATACATTCAAGTACCAAAAGGAAAACAAAATACAACAATGTTT  550

seq1  AATTAACTTTTATGAAAATGGAAAAGCAATGTATTAGACTGTCTTAGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACTTTTATGAAAATGGAAAAGCAATGTATTAGACTGTCTTAGTAA  600

seq1  TTATAACTTTAAGTCTGTACATAGATTGTATTTCTGCAAAGTTCTTAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAACTTTAAGTCTGTACATAGATTGTATTTCTGCAAAGTTCTTAGTG  650

seq1  ATTTAACTAAAGTTTATTTTCTGTACTTGCTCATGTTCAAATTAGACTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACTAAAGTTTATTTTCTGTACTTGCTCATGTTCAAATTAGACTAC  700

seq1  AAATTGCATTAGCTTTTCTATTACGCTGAGATTATGATATTTTTATTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGCATTAGCTTTTCTATTACGCTGAGATTATGATATTTTTATTCAT  750

seq1  TTTCAATAAAATTGTTTCTTTGTAAAAAAAAAACTCAAAGACATTCAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATAAAATTGTTTCTTTGTAAAAAAAAAACTCAAAGACATTCAAAA  800

seq1  GGTTTGGGAAGATTTTTTTTCAATATAAGGACAAGTTTCAAAAGGCAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGGGAAGATTTTTTTTCAATATAAGGACAAGTTTCAAAAGGCAAAC  850

seq1  AGGTTTTT-GGTTTTGTTTGTTTGTTTTGAGACAGGGTTTCTCTGTGTAG  899
      |||||||| ||||||||||||||| |||||||||||||||||||||||||
seq2  AGGTTTTTGGGTTTTGTTTGTTTG-TTTGAGACAGGGTTTCTCTGTGTAG  899

seq1  CCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGTT-GGCCTTGAACTC  948
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGTTGGGCCTTGAACTC  949

seq1  AGAAATCTGTCTGCCTCTGCCTCCCAAGTGCTGGGATT-AAAGGCGTGTG  997
      |||||||||||||||||||||||||||||||||||||| |||| ||||||
seq2  AGAAATCTGTCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAAGCCGTGTG  999

seq1  CCACCACGCCTGGCCCACAATTTTATTTTTTTAAGCTTAGTTTTGTTTTT  1047
      |||||||||||||||||||||||||||||||| |||||||||||| ||||
seq2  CCACCACGCCTGGCCCACAATTTTATTTTTTTTAGCTTAGTTTTG-TTTT  1048

seq1  ATTGTTTTTTAATTGAATTATTTTCCTTATTT-ACACTTTAAATGTT-AT  1095
      ||||||||     ||||||||||| ||||||| ||||||  |||||| ||
seq2  ATTGTTTT---GATGAATTATTTTTCTTATTTAACACTT--AATGTTAAT  1093

seq1  CCCCTTTCCAAGTATCC  1112
      ||||||| |||||||||
seq2  CCCCTTT-CAAGTATCC  1109