BAC Information

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BAC

Clone NameB6Ng01-256L05
Chromosome1 (Build37)
Map Location 85,229,463 - 85,338,975
singlet/doubletdoublet
Overlap geneC130026I21Rik, LOC100040135, LOC639868
Upstream gene5033414K04Rik, LOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742, LOC100040158, LOC621835, EG665378
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256L05.bB6Ng01-256L05.g
ACCGA062592GA062593
length1,145946
definitionB6Ng01-256L05.b B6Ng01-256L05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,337,828 - 85,338,975)(85,229,463 - 85,230,351)
sequence
gaattcctccaacaaagtcatgctggtttcaacaaggccacaactcctaa
tagcaccactccctatgggggccatttttattcaaaccagcaccctaaga
ttgggggtcaggatctttggtttcacagggaagatggggtctggttcatg
cctcccttctcccagacttcactgaagaccaggaagccttgttttgcaaa
ttgtgttccatgtttttcctaaatctaccaggcagaagcatcaatttcct
tatagattcgtgcaaaggccaccttgtggaggattgccaatggtgaagat
gttctattttctagattcagaactcagatgaatgtgaggtgtgccgggat
ggaggaacactcttctgctgtgatacttgtttcagagccttccatgagga
ctgtcatatcccaacagtggaagctgagatgtgagtgggatgggatccct
tctctgtctcctagtacccccgccttgtcatatgcatcatccttatggag
tggtagtgtgggtcttgaggtgggaaacacaagggctcttaacagatacc
aaacaggaagacccagagagctgtctcaagatgctgtcagcaaaaggtta
gtgttctctctgttagggagccatctctcctgatataaaggctgggtcct
ttgcctacacaccactactgccttttctcaaagttgtatactaaagcctc
ttgtccaaaagattgggggtagaatacactacttttgctttctatgtact
tatgaaagaaaaataagcatgactgactacttcccacatttcaccacctt
gcaatggactcttggaagttcaagattcccagaatttttttgaagaccat
tttactgtgcctagtctcccttgtgctcccagcaacctctgtcaggaaat
ggggacctaccactcatttacaaaggccactttccaagggctgcctcctg
ccatgacattgacaggggctggcaacctaagattctagtgggggtccttc
agtgtctgagaacccttgcccagatagactgtcagccaattcacgaaggc
ataatagcagcatagtacagtggctgtttcacttatcatgtcctctgctc
acttcctgtcaccttcagaaacacaatgggagttgcatcttctgt
gaattctggccatttagatgtttcagaaattcaaaccacagttagaaacc
tgaattattcttttcctctgagaaggtcaaagattatggctgggaatgtc
tgctgggtagctaagtaatgacatgtacttacactggtggagagaaatta
ttttaaaaattatttttattatttagtgtgtgattttgctgcatgcatat
atgcatcatgtgtgtgcagtaacccaggagaccaggagaggacattggat
cccataggactgcagttatatatggttgtactgtagatgctgggaattga
acctgggttctctgtaagaatagccagtgctcttaatcactgaggtatct
ctcctgtaccaccagagtattcgtaagggataagaggaccatgtgatgac
gggtctggccttgaggacattggaaaagactgagccataaggcttcctgc
ctccaagtgaggagctctctgataaaaggttggaggatactatagagggc
gctgctgaaggagagggttgaggtggagtaagaaccatctaccagaggca
agcatccagagaggtgaactctgattgagttctgtaagaaagaatcagta
agcaccaattttcctacccaacacacaaacgtgtagctcagactttattt
tttcaaaaccttatttttaaaatgggttcttaaatactttaactccccct
tctagccctccacccaccagaggtagtggaaaagaaaggttatgagaata
caggggagttggacctgtttagaaatagttctttggagcaaatcccatct
gcgttgtcaggaactcagcagttcagttcacaggaatcagcagaggctgc
tccatccacttgaaaacacttcacgaatatactagcagtccagctcagtg
gtgtcagatagcaaccacagtcctcacacagatgagactccaccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_85337828_85338975
seq2: B6Ng01-256L05.b_46_1190 (reverse)

seq1  ACAGAAGATGCAACT-CCATGGTG-TTCTGAAAGGTTGGACAGGAAGTGA  48
      ||||||||||||||| |||| ||| ||||| |||||  ||||||||||||
seq2  ACAGAAGATGCAACTCCCATTGTGTTTCTG-AAGGT--GACAGGAAGTGA  47

seq1  GCAGAGGACATGACCAGTGAAAACAGCCACTGTTCCTATGCCTGCTATTA  98
      |||||||||||||  |||| |||||||||||| | ||||| |||||||||
seq2  GCAGAGGACATGATAAGTG-AAACAGCCACTG-TACTATG-CTGCTATTA  94

seq1  TGCTTTCGTGAA-TGGCTGACAGTCTATCTGGGGCAAGGGTTCTCAGACA  147
      ||| |||||||| ||||||||||||||||| |||||||||||||||||||
seq2  TGCCTTCGTGAATTGGCTGACAGTCTATCT-GGGCAAGGGTTCTCAGACA  143

seq1  CTGAAGGACCCCACTTAGAATCTTAGGTTGTCAGCCCCCTGTCAATGTCA  197
      ||||||||||||   ||||||||||||||| ||| |||||||||||||||
seq2  CTGAAGGACCCCCACTAGAATCTTAGGTTGCCAG-CCCCTGTCAATGTCA  192

seq1  TGGCAGGAGGCAGCCCTTGGAAAGTGGGCTTTGT-AATGAGTGGTAGGTC  246
      ||||||||||||||||||||||||||| |||||| |||||||||||||||
seq2  TGGCAGGAGGCAGCCCTTGGAAAGTGGCCTTTGTAAATGAGTGGTAGGTC  242

seq1  CCCATTTCCTGACAGAGATTGCTGGGAGCACAA-GGAGACTAGGCACAGT  295
      ||||||||||||||||| ||||||||||||||| ||||||||||||||||
seq2  CCCATTTCCTGACAGAGGTTGCTGGGAGCACAAGGGAGACTAGGCACAGT  292

seq1  AAAATGGTCTTCAAAAAAATTCTGGGAATCTTGAACTTCTAAGAGTCCAT  345
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAAATGGTCTTCAAAAAAATTCTGGGAATCTTGAACTTCCAAGAGTCCAT  342

seq1  TGCAAGGTGGTGAAATGTGGGAAGTAGTCAGTCATGCTTATTTTTCTTTC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGTGGTGAAATGTGGGAAGTAGTCAGTCATGCTTATTTTTCTTTC  392

seq1  ATAAGTACATAGAAAGCAAAAGTAGTGTATTCTACCCCCAATCTTTTGGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTACATAGAAAGCAAAAGTAGTGTATTCTACCCCCAATCTTTTGGA  442

seq1  CAAGAGGCTTTAGTATACAACTTTGAGAAAAGGCAGTAGTGGTGTGTAGG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGGCTTTAGTATACAACTTTGAGAAAAGGCAGTAGTGGTGTGTAGG  492

seq1  CAAAGGACCCAGCCTTTATATCAGGAGAGATGGCTCCCTAACAGAGAGAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGACCCAGCCTTTATATCAGGAGAGATGGCTCCCTAACAGAGAGAA  542

seq1  CATTAACCTTTTGCTGAGAGCATCTTGAGACAGCTCTCTGGGTCTTCCTG  595
      || |||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CACTAACCTTTTGCTGACAGCATCTTGAGACAGCTCTCTGGGTCTTCCTG  592

seq1  TTTGGTATCTGTTAAGAGCCCTTGTGTTTCCCACCTCAAGACCCACACTA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTATCTGTTAAGAGCCCTTGTGTTTCCCACCTCAAGACCCACACTA  642

seq1  CCACTCCATAAGGATGATGCATATGACAAGGCGGGGGTACTAGGAGACAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCCATAAGGATGATGCATATGACAAGGCGGGGGTACTAGGAGACAG  692

seq1  AGAAGGGATCCCATCCCACTCACATCTCAGCTTCCACTGTTGGGATATGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGATCCCATCCCACTCACATCTCAGCTTCCACTGTTGGGATATGA  742

seq1  CAGTCCTCATGGAAGGCTGTGAAACAAGTATCACAGCAGAAGAGTGTTCC  795
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CAGTCCTCATGGAAGGCTCTGAAACAAGTATCACAGCAGAAGAGTGTTCC  792

seq1  TCCATCCCGGCACACCTCACATTCATCTGAGTTCTGAATCTAGAAAATAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCCGGCACACCTCACATTCATCTGAGTTCTGAATCTAGAAAATAG  842

seq1  AACATCTTCACCATTGGCAATCCTCCACAAGGTGGCCTTTGCACGAATCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTTCACCATTGGCAATCCTCCACAAGGTGGCCTTTGCACGAATCT  892

seq1  ATAAGGAAATTGATGCTTCTGCCTGGTAGATTTAGGAAAAACATGGAACA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGAAATTGATGCTTCTGCCTGGTAGATTTAGGAAAAACATGGAACA  942

seq1  CAATTTGCAAAACAAGGCTTCCTGGTCTTCAGTGAAGTCTGGGAGAAGGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTGCAAAACAAGGCTTCCTGGTCTTCAGTGAAGTCTGGGAGAAGGG  992

seq1  AGGCATGAACCAGACCCCATCTTCCCTGTGAAACCAAAGATCCTGACCCC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGAACCAGACCCCATCTTCCCTGTGAAACCAAAGATCCTGACCCC  1042

seq1  CAATCTTAGGGTGCTGGTTTGAATAAAAATGGCCCCCATAGGGAGTGGTG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTAGGGTGCTGGTTTGAATAAAAATGGCCCCCATAGGGAGTGGTG  1092

seq1  CTATTAGGAGTTGTGGCCTTGTTGAAACCAGCATGACTTTGTTGGAGGAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAGGAGTTGTGGCCTTGTTGAAACCAGCATGACTTTGTTGGAGGAA  1142

seq1  TTC  1148
      |||
seq2  TTC  1145

seq1: chr1_85229463_85230351
seq2: B6Ng01-256L05.g_65_953

seq1  GAATTCTGGCCATTTAGATGTTTCAGAAATTCAAACCACAGTTAGAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCCATTTAGATGTTTCAGAAATTCAAACCACAGTTAGAAACC  50

seq1  TGAATTATTCTTTTCCTCTGAGAAGGTCAAAGATTATGGCTGGGAATGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTATTCTTTTCCTCTGAGAAGGTCAAAGATTATGGCTGGGAATGTC  100

seq1  TGCTGGGTAGCTAAGTAATGACATGTACTTACACTGGTGGAGAGAAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGTAGCTAAGTAATGACATGTACTTACACTGGTGGAGAGAAATTA  150

seq1  TTTAAAAAATTATTTTTATTATTTAGTGTGTGATTTTGCTGCATGCATAT  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAATTATTTTTATTATTTAGTGTGTGATTTTGCTGCATGCATAT  200

seq1  ATGCATCATGTGTGTGCAGTAACCCAGGAGACCAGGAGAGGACATTGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATCATGTGTGTGCAGTAACCCAGGAGACCAGGAGAGGACATTGGAT  250

seq1  CCCATAGGACTGCAGCTATATATGGTTGTACTGTAGATGCTGGGAATTGA  300
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCCATAGGACTGCAGTTATATATGGTTGTACTGTAGATGCTGGGAATTGA  300

seq1  ACCTGGGTTCTCTGTAAGAATAGCCAGTGCTCTTAATCACTGAGGTATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGTTCTCTGTAAGAATAGCCAGTGCTCTTAATCACTGAGGTATCT  350

seq1  CTCCTGTACCACCAGAGTATTCGTAAGGGATAAGAGGACCATGTGATGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTACCACCAGAGTATTCGTAAGGGATAAGAGGACCATGTGATGAC  400

seq1  GGGTCTGGCCTTGAGGACATTGGAAAAGACTGAGCCATAAGGCTTCCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGGCCTTGAGGACATTGGAAAAGACTGAGCCATAAGGCTTCCTGC  450

seq1  CTCCAAGTGAGGAGCTCTCTGATAAAAGGTTGGAGGATACTATAGAGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGTGAGGAGCTCTCTGATAAAAGGTTGGAGGATACTATAGAGGGC  500

seq1  GCTGCTGAAGGAGAGGGTTGAGGTGGAGTAAGAACCATCTACCAGAGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGAAGGAGAGGGTTGAGGTGGAGTAAGAACCATCTACCAGAGGCA  550

seq1  AGCATCCAGAGAGGTGAACTCTGATTGAGTTCTGTAAGAAAGAATCAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCAGAGAGGTGAACTCTGATTGAGTTCTGTAAGAAAGAATCAGTA  600

seq1  AGCACCAATTTTCCTACCCAACACACAAACGTGTAGCTCAGACTTTATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCAATTTTCCTACCCAACACACAAACGTGTAGCTCAGACTTTATTT  650

seq1  TTTCAAAACCTTACTTTTAAAATGGGTTCTTAAATACTTTAACTCCCCCT  700
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAACCTTATTTTTAAAATGGGTTCTTAAATACTTTAACTCCCCCT  700

seq1  TCTAGCCCTCCACCCACCAGAGGTAGTGGAAAAGAAAGGTTATGAGGATA  750
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCTAGCCCTCCACCCACCAGAGGTAGTGGAAAAGAAAGGTTATGAGAATA  750

seq1  CAGGGGAGTTGGACCTGTTTAGAAATAGTTCTTTGGAGCAAATCCCATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGAGTTGGACCTGTTTAGAAATAGTTCTTTGGAGCAAATCCCATCT  800

seq1  GCGTTGTCAGGAACTCAGCAGTTCAGTTCACAGGAATCAGCAGAGGCTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTGTCAGGAACTCAGCAGTTCAGTTCACAGGAATCAGCAGAGGCTGC  850

seq1  TCCATCCACTTGAAAACATTTCACGAATATACTAGCAGT  889
      |||||||||||||||||| ||||||||||||||||||||
seq2  TCCATCCACTTGAAAACACTTCACGAATATACTAGCAGT  889