BAC Information

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BAC

Clone NameB6Ng01-256P15
Chromosome1 (Build37)
Map Location 123,793,060 - 123,940,790
singlet/doubletdoublet
Overlap genenone
Upstream geneAI848258, Insig2, Ccdc93, LOC100041926, Htr5b, LOC666656, Ddx18
Downstream geneLOC666971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256P15.bB6Ng01-256P15.g
ACCGA062798GA062799
length1,179824
definitionB6Ng01-256P15.b B6Ng01-256P15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,939,629 - 123,940,790)(123,793,060 - 123,793,884)
sequence
gaattctctatgtaaaccagactaatctcatattcacaacactcatctgt
ctctggcctcctaggcgacagattaaagaaatgtgttaccacactcaggc
ttagatgtcttctcttgctgtcaaaagggactccacaatgtgggtaagaa
ggaagggatggcagatggatagagcccacagagaggccagagaaccaatg
tgcttgacaaataggagaacaagctggtccactctggaagttttcaggaa
cactcaggataagcatgttgccttctacagaaagtgaaaatatctctgag
taccagaaccttcataagaatctacctataattggaaatactggacttgg
ctccagtaatattctttagatcttcgctatagaattagcatctcacaggt
atgcaggccaaaccttagactctgctatctcttcttgtcctaaccagtgc
cagcaaataaatgttaaattatagtcctcccagcctagatttcagttctt
tggtgtctcatgtattttatgatcagcatttttcattaagtgttctcaaa
taacttcattaactctctctctcaccttccagaagcttctcgtcaccttc
ttttaccaaactcattttcatatctgtgccctggactctgaaattggaac
caaatgtgtttcatttgtttcttactaaaatgcatgcatttccccgtggc
ttttgtcacctcttaatgtgggcttatctctttccttcatcaccttcctc
ttcctatatgcaccttgctccactttaatttgtctcccacggagctcact
gattagctgatgaggctctgggttccactgctgggtataacttatttcat
tccacagctgcctggtagggaattattctcgatcagagcagtttgtgcac
tcaacgagccacagacagtggaagactctggcaaggcagtcaacagctca
tgcctgctgtcaaattaatggtggcttgacaagtgctgaaagccaagtat
gcctctcttggtgtcgtgttcagaatatggggtggtaatacgctgcatcc
ctggtctttttttgatttttaccctgaaggacaattgtgaagctccacca
ggagagtttctagccactggctttaagttttttctgatagtcttcgatat
ttctcaagctttaacctctttagagactc

gaattcatctccttgctctaaaatttagtcagtacttactacacttaggg
atggtcctcgaataaagttcttatttccttatgcatataccagaaccact
cgtgcccctgttaaatgtcgcttgaatggtggtgctcaaaataatgcttc
ttctatcactttctgtagttttatacattgccccatttgggagtttctga
atatgtgtgcctcacatcccagattcacaggatttgattttttcatcccc
attctgttgaatgtggaggtgatttagtcatggtagtagcttgctcaagg
atggaactcaggccttttaaaaagaggcacaagatatccatcaccacttc
caacctgtaaggattcagaaaggagtgccatgggccagaaaggagatatg
tactaagcatcaagggtaccttgattttgaactttaaatcctttagaacc
gtgagaactgagtttctgttgctggcaagctcagattgtggttaataagc
atttctcctgcatactacagagactaggatgccctatgatggctcctgtc
ttacctatatttacataattttttttgttttgttttgggttttgagacag
gttttgatactcagccctgactgtccttaaactcactagccttcttcctg
cattagccttctattgctaggattttagaagtctgctaccatgaccaggt
ttaagtttcaatgtagttatttatgttctgaaaagagatgttttatttac
tttataatatttgcttattttatctgtttaggtacttttatgtgtgtata
tgtgtgtctgcatgttttgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_123939629_123940790
seq2: B6Ng01-256P15.b_47_1225 (reverse)

seq1  GAGTCT---AAGA-GTTAAAG-TTGAGAAATAATTGGAGAACTATGAG-A  44
      ||||||   |||| ||||||| ||||||||||  | ||  ||||| || |
seq2  GAGTCTCTAAAGAGGTTAAAGCTTGAGAAATA--TCGAAGACTATCAGAA  48

seq1  AAAACTTAA--CCAGTGCTAAGAAATTCT-CTGGT-GAGCTTCACAAATG  90
      |||||||||  ||||||   ||||| ||| ||||| ||||||||||| ||
seq2  AAAACTTAAAGCCAGTGGCTAGAAACTCTCCTGGTGGAGCTTCACAATTG  98

seq1  TCCTTCAGG--TAAAATC--AAAAAGACCA-GGATGCAGCGTATTAC--A  133
      |||||||||   ||||||  |||||||||| ||||||||||||||||   
seq2  TCCTTCAGGGTAAAAATCAAAAAAAGACCAGGGATGCAGCGTATTACCAC  148

seq1  CCCATA-TCTGAACACCGACACCAAGAGAGGCAATACTTGGCTTTCAGCA  182
      |||||| |||||||| |||||||||||||||| |||||||||||||||||
seq2  CCCATATTCTGAACA-CGACACCAAGAGAGGC-ATACTTGGCTTTCAGCA  196

seq1  CTTGTTCAAGCCA-CATTAATTTGACAGCAGGCATGAGCTGTTGACTGCC  231
      |||| |||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTTG-TCAAGCCACCATTAATTTGACAGCAGGCATGAGCTGTTGACTGCC  245

seq1  -TGCCAGAGTCTTCCACTGTCTGTGGCTCGTTGAGTGCAC-AACTGCTCT  279
       ||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTGCCAGAGTCTTCCACTGTCTGTGGCTCGTTGAGTGCACAAACTGCTCT  295

seq1  GATCGAGAATAATTCCCTACCAGGCAGCTGTGGAATG-AATAAGTTATAC  328
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GATCGAGAATAATTCCCTACCAGGCAGCTGTGGAATGAAATAAGTTATAC  345

seq1  CCAGCAGTGGAACCCAGAGCCTCATCAGCTAATCAGTGAGCTCCGTGGGA  378
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGTGGAACCCAGAGCCTCATCAGCTAATCAGTGAGCTCCGTGGGA  395

seq1  GACAAATTAAAGTGGAGCAAGGTGCATATAGGAAGAGGAAGGTGATGAAG  428
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATTAAAGTGGAGCAAGGTGCATATAGGAAGAGGAAGGTGATGAAG  445

seq1  GAAAGAGATAAGCCCACATTAAGAGGTGACAAAAGCCACGGGGAAATGCA  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGATAAGCCCACATTAAGAGGTGACAAAAGCCACGGGGAAATGCA  495

seq1  TGCATTTTAGTAAGAAACAAATGAAACACATTTGGTTCCAATTTCAGAGT  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTTAGTAAGAAACAAATGAAACACATTTGGTTCCAATTTCAGAGT  545

seq1  CCAGGGCACAGATATGAAAATGAGTTTGGTAAAAGAAGGTGACGAGAAGC  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCACAGATATGAAAATGAGTTTGGTAAAAGAAGGTGACGAGAAGC  595

seq1  TTCTGGAAGGTGAGAGAGAGAGTTAATGAAGTTATTTGAGAACACTTAAT  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAAGGTGAGAGAGAGAGTTAATGAAGTTATTTGAGAACACTTAAT  645

seq1  GAAAAATGCTGATCATAAAATACATGAGACACCAAAGAACTGAAATCTAG  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGCTGATCATAAAATACATGAGACACCAAAGAACTGAAATCTAG  695

seq1  GCTGGGAGGACTATAATTTAACATTTATTTGCTGGCACTGGTTAGGACAA  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGAGGACTATAATTTAACATTTATTTGCTGGCACTGGTTAGGACAA  745

seq1  GAAGAGATAGCAGAGTCTAAGGTTTGGCCTGCATACCTGTGAGATGCTAA  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGATAGCAGAGTCTAAGGTTTGGCCTGCATACCTGTGAGATGCTAA  795

seq1  TTCTATAGCGAAGATCTAAAGAATATTACTGGAGCCAAGTCCAGTATTTC  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATAGCGAAGATCTAAAGAATATTACTGGAGCCAAGTCCAGTATTTC  845

seq1  CAATTATAGGTAGATTCTTATGAAGGTTCTGGTACTCAGAGATATTTTCA  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATAGGTAGATTCTTATGAAGGTTCTGGTACTCAGAGATATTTTCA  895

seq1  CTTTCTGTAGAAGGCAACATGCTTATCCTGAGTGTTCCTGAAAACTTCCA  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTAGAAGGCAACATGCTTATCCTGAGTGTTCCTGAAAACTTCCA  945

seq1  GAGTGGACCAGCTTGTTCTCCTATTTGTCAAGCACATTGGTTCTCTGGCC  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGACCAGCTTGTTCTCCTATTTGTCAAGCACATTGGTTCTCTGGCC  995

seq1  TCTCTGTGGGCTCTATCCATCTGCCATCCCTTCCTTCTTACCCACATTGT  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGGGCTCTATCCATCTGCCATCCCTTCCTTCTTACCCACATTGT  1045

seq1  GGAGTCCCTTTTGACAGCAAGAGAAGACATCTAAGCCTGAGTGTGGTAAC  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCCCTTTTGACAGCAAGAGAAGACATCTAAGCCTGAGTGTGGTAAC  1095

seq1  ACATTTCTTTAATCTGTCGCCTAGGAGGCCAGAGACAGATGAGTGTTGTG  1128
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCTTTAATCTGTCGCCTAGGAGGCCAGAGACAGATGAGTGTTGTG  1145

seq1  AATATGAGATTAGTCTGGTTTACATAGAGAATTC  1162
      ||||||||||||||||||||||||||||||||||
seq2  AATATGAGATTAGTCTGGTTTACATAGAGAATTC  1179


seq1: chr1_123793060_123793884
seq2: B6Ng01-256P15.g_66_889

seq1  GAATTCATCTCCTTGCTCTAAAATTTAGTCAGTACTTACTACACTTAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTCCTTGCTCTAAAATTTAGTCAGTACTTACTACACTTAGGG  50

seq1  ATGGTCCTCGAATAAAGTTCTTATTTCCTTATGCATATACCAGAACCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCCTCGAATAAAGTTCTTATTTCCTTATGCATATACCAGAACCACT  100

seq1  CGTGCCCCTGTTAAATGTCGCTTGAATGGTGGTGCTCAAAATAATGCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCCCCTGTTAAATGTCGCTTGAATGGTGGTGCTCAAAATAATGCTTC  150

seq1  TTCTATCACTTTCTGTAGTTTTATACATTGCCCCATTTGGGAGTTTCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCACTTTCTGTAGTTTTATACATTGCCCCATTTGGGAGTTTCTGA  200

seq1  ATATGTGTGCCTCACATCCCAGATTCACAGGATTTGATTTTTTCATCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGTGCCTCACATCCCAGATTCACAGGATTTGATTTTTTCATCCCC  250

seq1  ATTCTGTTGAATGTGGAGGTGATTTAGTCATGGTAGTAGCTTGCTCAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTTGAATGTGGAGGTGATTTAGTCATGGTAGTAGCTTGCTCAAGG  300

seq1  ATGGAACTCAGGCCTTTTAAAAAGAGGCACAAGATATCCATCACCACTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACTCAGGCCTTTTAAAAAGAGGCACAAGATATCCATCACCACTTC  350

seq1  CAACCTGTAAGGATTCAGAAAGGAGTGCCATGGGCCAGAAAGGAGATATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGTAAGGATTCAGAAAGGAGTGCCATGGGCCAGAAAGGAGATATG  400

seq1  TACTAAGCATCAAGGGTACCTTGATTTTGAACTTTAAATCCTTTAGAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAGCATCAAGGGTACCTTGATTTTGAACTTTAAATCCTTTAGAACC  450

seq1  GTGAGAACTGAGTTTCTGTTGCTGGCAAGCTCAGATTGTGGTTAATAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAACTGAGTTTCTGTTGCTGGCAAGCTCAGATTGTGGTTAATAAGC  500

seq1  ATTTCTCCTGCATACTACAGAGACTAGGATGCCCTATGATGGCTCCTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCCTGCATACTACAGAGACTAGGATGCCCTATGATGGCTCCTGTC  550

seq1  TTACCTATATTTACATAATTTTTTTTGTTTTGTTTTGGGTTTTGAGACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTATATTTACATAATTTTTTTTGTTTTGTTTTGGGTTTTGAGACAG  600

seq1  GTTTTGATACTCAGCCCTGACTGTCCTTAAACTCACTAGCCTTCTTCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGATACTCAGCCCTGACTGTCCTTAAACTCACTAGCCTTCTTCCTG  650

seq1  CATTAGCCTTCTATTGCTAGGATTTTAGAAGTCTGCTACCATGACCAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGCCTTCTATTGCTAGGATTTTAGAAGTCTGCTACCATGACCAGGT  700

seq1  TTAAGTTTCAATGTAGTTATTTATGTTCTGAAAAGAGATGTTTTATTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTTCAATGTAGTTATTTATGTTCTGAAAAGAGATGTTTTATTTAC  750

seq1  TTTATAATATTTGCTTATTTTATCTGTTTAGGTACTTTTATGTGTGTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAATATTTGCTTATTTTATCTGTTTAGGTACTTTTATGTGTGTATA  800

seq1  TGTGTGTCTGCATGTTTGTGTGTGT  825
      ||||||||||||||||| |||||||
seq2  TGTGTGTCTGCATGTTT-TGTGTGT  824


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