BAC Information

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BAC

Clone NameB6Ng01-257L09
Chromosome1 (Build37)
Map Location 166,182,196 - 166,326,481
singlet/doubletdoublet
Overlap geneSlc19a2, 4930455F23Rik, Blzf1, Nme7
Upstream genePrrx1, LOC100039597, Scyl1bp1, LOC665237, Gm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5
Downstream geneAtp1b1, LOC100040065, Dpt, Xcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl, Gpr161, Iqwd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-257L09.bB6Ng01-257L09.g
ACCGA063339GA063340
length7781,176
definitionB6Ng01-257L09.b B6Ng01-257L09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(166,182,196 - 166,182,970)(166,325,287 - 166,326,481)
sequence
gaattctttatctctgaaaagtgttttaacttttcttggtagcattcggt
tttgatgtttactgcttttctttgacttgtaaaaccatttcacatattct
gcttgacactctgagccttggagattccttttgcccttttagtccatcca
ggcttcattcatatgacaattctaaatctagtatattcaccaactcacct
atgtatggtccagtactcaaaagtatgatctctgcttgagataatctttc
tctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtctgtgtctgtctgtctgtctgtctgtctgtgggttcttttcctat
cttccttatctttctggacccaccatgttttcagtttccattttaaattc
tgtgtgtgtacatgtttcttacttggctcagaactcctggaactaaaggt
tcattcattcattcttttaaaatctcaatacagattaagtagtgctatgt
aaatatgtattcatcaagtagggtcacagagctctttacctggttttctt
cagtcaacgtgggaattggtttaaaaccgaacaatttactttcccgtagc
atatctcccagaagaaaatgcacacaaacaagttctgcccaaggttgtga
aaggcacttttgactagaacagatcgattgattccctttgatctcgtggt
gggtgttgcctggggatgagagctagccaacataaaggaaataaggggat
gtgtgcccttttgtttgtttttgtctgt
gaattccatatcatgtctgcaggttttcataatctattcatctgctgacg
ggcatgggggctgactccttccttgctactatggagagaaccatggtaaa
catgaacgtgcgggtacttccataggccatagagttctctgatcacctgc
aaggagccgtagggctgggccatgagggagatcaacctgcatgctttcgg
tggtaccacactgctttccacaggggctgtctcgctttacacccccagca
acagggaaggaggcttccttccccctgatgtcttctccagactttgtcct
catttgtttttgggtgattggtaagctatgctatagaaattcctattttt
aactcagtacaatgtaaccatttaaacatataactgtttctatattggat
tctgctttccagtgtaattaagaaagcgatttgacatacaacaattcaat
aaattctcaaaatgaattattcccagcacttgtgtgaatagactgctggt
tagctagcttcctttccttatatcctttttggttggtttgactcagagtg
cagagcacagaaaacaatatgtttagcaaacaaaactccctgtgtagggg
caaaaacttagacgataaacttctgtttggtgaacagacattcattctta
atagaaattcctgtgtgagctgcttcatgcaggctctgcagagcctaatg
tgttagatgtgacaagaagaggacagagctgtgcactgcataagagcaaa
tgctgcacactgcggctcccctgcttcccatcgccccaggttaatgagga
ctctgaataccaagtcactcttttgtatattaatgtccactgggagtggg
catccatcttgttacacagagaaaaggcaaaggaaagcatgaaatagttt
aagccactctccctccttaacacttgtcacagtttaagaaagagcaaatt
aaaatgcatcttaatgggtgtttttatgtcgattcagcatcttcaccccc
agaaatagatcaaagcagtatagaacattgttcccaagctcagacgagct
cagtctcattggcttacacagatgattagataagccatagtgagatgctg
actagcctatgctgacaccaacagctctgcttgttgttttcgaaacagtt
tcctgtgtagccctggtcatatcctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_166182196_166182970
seq2: B6Ng01-257L09.b_45_822

seq1  GAATTCTTTATCTCTGAAAAGTGTTTTAACTTTTCTTGGTAGCATTCGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATCTCTGAAAAGTGTTTTAACTTTTCTTGGTAGCATTCGGT  50

seq1  TTTGATGTTTACTGCTTTTCTTTGACTTGTAAAACCATTTCACATATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGTTTACTGCTTTTCTTTGACTTGTAAAACCATTTCACATATTCT  100

seq1  GCTTGACACTCTGAGCCTTGGAGATTCCTTTTGCCCTTTTAGTCCATCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGACACTCTGAGCCTTGGAGATTCCTTTTGCCCTTTTAGTCCATCCA  150

seq1  GGCTTCATTCATATGACAATTCTAAATCTAGTATATTCACCAACTCACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCATTCATATGACAATTCTAAATCTAGTATATTCACCAACTCACCT  200

seq1  ATGTATGGTCCAGTACTCAAAAGTATGATCTCTGCTTGAGATAATCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGGTCCAGTACTCAAAAGTATGATCTCTGCTTGAGATAATCTTTC  250

seq1  TCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  300

seq1  TGTGTCTGTGTCTGTCTGTCTGTCTGTCTGTCTGTGGGTTCTTTTCCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTGTGTCTGTCTGTCTGTCTGTCTGTCTGTGGGTTCTTTTCCTAT  350

seq1  CTTCCTTATCTTTCTGGACCCACCATGTTTTCAGTTTCCATTTTAAATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTATCTTTCTGGACCCACCATGTTTTCAGTTTCCATTTTAAATTC  400

seq1  TGTGTGTGTACATGTTTCTTACTTGGCTCAGAACTCCTGGAACTAAAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTACATGTTTCTTACTTGGCTCAGAACTCCTGGAACTAAAGGT  450

seq1  TCATTCATTCATTCTTTTAAAATCTCAATACAGATTAAGTAGTGCTATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCATTCATTCTTTTAAAATCTCAATACAGATTAAGTAGTGCTATGT  500

seq1  AAATATGTATTCATCAAGTAGGGTCACAGAGCTCTTTACCTGGTTTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGTATTCATCAAGTAGGGTCACAGAGCTCTTTACCTGGTTTTCTT  550

seq1  CAGTCAACGTGGGAATTGGTTTAAAACCGAACAATTTACTTTCCCGTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAACGTGGGAATTGGTTTAAAACCGAACAATTTACTTTCCCGTAGC  600

seq1  ATATCTCCCAGAAGAAAATGCACACAAACAAGTTCTGCCCAAGGTTGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCCCAGAAGAAAATGCACACAAACAAGTTCTGCCCAAGGTTGTGA  650

seq1  AAGGCAC-TTTGACTAGAACAGATCGATTGATTCCCTTTGATCTCGTGGT  699
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACTTTTGACTAGAACAGATCGATTGATTCCCTTTGATCTCGTGGT  700

seq1  GGGTGTTGCCT-GGGATGAGAGCTAGCCAACAGAAAGGTAATAAGGGGAT  748
      ||||||||||| |||||||||||||||||||| ||||| |||||||||||
seq2  GGGTGTTGCCTGGGGATGAGAGCTAGCCAACATAAAGGAAATAAGGGGAT  750

seq1  GTGTGCCC-TTTGTTTGTTTTTGCCTGT  775
      |||||||| |||||||||||||| ||||
seq2  GTGTGCCCTTTTGTTTGTTTTTGTCTGT  778

seq1: chr1_166325287_166326481
seq2: B6Ng01-257L09.g_69_1243 (reverse)

seq1  AGGATA--GCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACAAAACA  48
      ||||||   |||||||||||||| ||||  |||| ||| |||||||    
seq2  AGGATATGACCAGGGCTACACAG-GAAA--CTGTTTCG-AAAACAA---C  43

seq1  AAGCAAGAGGCTGTGTGGGTGTTCAGCATAGGGCTTAGCTCAGCATCTCA  98
      |||| ||||    ||| |||| ||||||||||   ||| |||||||||||
seq2  AAGC-AGAG---CTGTTGGTG-TCAGCATAGG--CTAG-TCAGCATCTCA  85

seq1  CTATTGCTAATTTCCTTATTCATCTGTGT-AGCCATGGAGACTGAGCTTC  147
      |||| ||| ||     || |||||||||| |||||  |||||||||||  
seq2  CTATGGCTTAT----CTAATCATCTGTGTAAGCCAATGAGACTGAGCT--  129

seq1  CGTCTGAGCTTTGGAAC-ATGTTCTTATTACTGCTTTGAATCTATTTCTG  196
      ||||||||||| ||||| |||||||   |||||||||| |||||||||||
seq2  CGTCTGAGCTTGGGAACAATGTTCT--ATACTGCTTTG-ATCTATTTCTG  176

seq1  GGGGTGAAGATGCTGAAATCGACATAAAACACCCCATTTAAGATGCATTT  246
      ||||||||||||||| ||||||||||||| || ||  |||||||||||||
seq2  GGGGTGAAGATGCTG-AATCGACATAAAA-ACACCCATTAAGATGCATTT  224

seq1  TATTTTGCTCTTTCTAAAACTGTGAC-AGTGTT-AGGAGGGAGAGTGGCT  294
      || |||||||||||| |||||||||| |||||| ||||||||||||||||
seq2  TAATTTGCTCTTTCTTAAACTGTGACAAGTGTTAAGGAGGGAGAGTGGCT  274

seq1  TAAACTATTTCATGCTTTCCTTTGCCTTTTCTCTGTGTAACAAGATGGAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTATTTCATGCTTTCCTTTGCCTTTTCTCTGTGTAACAAGATGGAT  324

seq1  GCCCACTCCCAGTGGACATTAATATACAAAAGAGTGACTTGGTATTCAGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACTCCCAGTGGACATTAATATACAAAAGAGTGACTTGGTATTCAGA  374

seq1  GTCCTCATTAACCTGGGGCGATGGGAAGCAGGGGAGCCGCAGTGTGCAGC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCATTAACCTGGGGCGATGGGAAGCAGGGGAGCCGCAGTGTGCAGC  424

seq1  ATTTGCTCTTATGCAGTGCACAGCTCTGTCCTCTTCTTGTCACATCTAAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTCTTATGCAGTGCACAGCTCTGTCCTCTTCTTGTCACATCTAAC  474

seq1  ACATTAGGCTCTGCAGAGCCTGCATGAAGCAGCTCACACAGGAATTTCTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAGGCTCTGCAGAGCCTGCATGAAGCAGCTCACACAGGAATTTCTA  524

seq1  TTAAGAATGAATGTCTGTTCACCAAACAGAAGTTTATCGTCTAAGTTTTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAATGAATGTCTGTTCACCAAACAGAAGTTTATCGTCTAAGTTTTT  574

seq1  GCCCCTACACAGGGAGTTTTGTTTGCTAAACATATTGTTTTCTGTGCTCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTACACAGGGAGTTTTGTTTGCTAAACATATTGTTTTCTGTGCTCT  624

seq1  GCACTCTGAGTCAAACCAACCAAAAAGGATATAAGGAAAGGAAGCTAGCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCTGAGTCAAACCAACCAAAAAGGATATAAGGAAAGGAAGCTAGCT  674

seq1  AACCAGCAGTCTATTCACACAAGTGCTGGGAATAATTCATTTTGAGAATT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGCAGTCTATTCACACAAGTGCTGGGAATAATTCATTTTGAGAATT  724

seq1  TATTGAATTGTTGTATGTCAAATCGCTTTCTTAATTACACTGGAAAGCAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAATTGTTGTATGTCAAATCGCTTTCTTAATTACACTGGAAAGCAG  774

seq1  AATCCAATATAGAAACAGTTATATGTTTAAATGGTTACATTGTACTGAGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAATATAGAAACAGTTATATGTTTAAATGGTTACATTGTACTGAGT  824

seq1  TAAAAATAGGAATTTCTATAGCATAGCTTACCAATCACCCAAAAACAAAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAGGAATTTCTATAGCATAGCTTACCAATCACCCAAAAACAAAT  874

seq1  GAGGACAAAGTCTGGAGAAGACATCAGGGGGAAGGAAGCCTCCTTCCCTG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAAAGTCTGGAGAAGACATCAGGGGGAAGGAAGCCTCCTTCCCTG  924

seq1  TTGCTGGGGGTGTAAAGCGAGACAGCCCCTGTGGAAAGCAGTGTGGTACC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGGGGTGTAAAGCGAGACAGCCCCTGTGGAAAGCAGTGTGGTACC  974

seq1  ACCGAAAGCATGCAGGTTGATCTCCCTCATGGCCCAGCCCTACGGCTCCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAAAGCATGCAGGTTGATCTCCCTCATGGCCCAGCCCTACGGCTCCT  1024

seq1  TGCAGGTGATCAGAGAACTCTATGGCCTATGGAAGTACCCGCACGTTCAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTGATCAGAGAACTCTATGGCCTATGGAAGTACCCGCACGTTCAT  1074

seq1  GTTTACCATGGTTCTCTCCATAGTAGCAAGGAAGGAGTCAGCCCCCATGC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACCATGGTTCTCTCCATAGTAGCAAGGAAGGAGTCAGCCCCCATGC  1124

seq1  CCGTCAGCAGATGAATAGATTATGAAAACCTGCAGACATGATATGGAATT  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCAGCAGATGAATAGATTATGAAAACCTGCAGACATGATATGGAATT  1174

seq1  C  1195
      |
seq2  C  1175