BAC Information

Click to search

BAC

Clone NameB6Ng01-258D15
Chromosome1 (Build37)
Map Location 15,027,359 - 15,161,281
singlet/doubletdoublet
Overlap geneEG269105, LOC100039949
Upstream geneEya1, LOC665391, Msc, Smt3h2-ps4, EG665407, Trpa1
Downstream geneLOC100039959, Kcnb2, Ppia-ps1_109.1, Terf1, Gm106, LOC665434, 4930444P10Rik, Rpl7, Rdh10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258D15.bB6Ng01-258D15.g
ACCGA063719GA063720
length1,1161,149
definitionB6Ng01-258D15.b B6Ng01-258D15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,027,359 - 15,028,475)(15,160,118 - 15,161,281)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ctttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagcaccctct
cttctttctgttcctctaaagtttatggtctctttttctatcacattaat
ctacatatgaaaatatatgacatctgctgggcccatttagcaatgttcat
atatacataaacattttggttttgggatgaccacttggaattggacaacc
tgtcaagaactccttcctggagaagtctgatactcgccctctgtagacat
tgattgcctatagctagtcatctcggggtggggcctggcgaatgtgtact
atttcttttttatgttcaccagtgttgaattctctgcaatatggttactg
aataagaatcttactgttcctcacaagaattttgcagtttgaattctcat
ggtatgatcttcaatctacctagaatttatttttctcaggagcagttttc
tcattttgttctgatcctgtttaaataaccagttgccctttgaccatttc
ctgaagtctgtcctttgtctattcgtttataatggtgtctgctacaatga
caactttccatgtgtctgactcaaggttatttattgaattacattgatct
gtttgttgcttttcatatcagtgatatttgtcttcgggtttgtgctgcat
tacagctgatatctgcttttgctacgctcctttcctttcaagctttcttt
ggctttatttgttcttacacagagcatgagctttgtcacttgcatcaata
aaaaaaaaaactgttgatttcatgaaaaagtaacctcttgttatacagaa
catactaaataatcct
gaattccaggctgaaataattattacctagaactttgaagatgttgactt
gaaagtctaaagtttcttttttcatttttcttgaacactcctaggaatac
gttgacatgctttccaaaggtaagtcatacttcccgaagatccaaaagaa
ttaaagatggcattatatattcacagccaaagatgaagcttcagtttcat
agataatagatctgttaagaaatctgcagaataacaatttattcccatga
atgttagacctctacaagtaattggacattcatgttgaatcaaggacctg
actctgatatggagatttatttttatagcaagaaataatttaaaaacatc
aaggttctgcctcctaatcaagcaccatacatcctaatattaaatatggc
agagaaaaatcattaaattaattattaactgtaaagacaaaaaagtactg
ttgggactggttttgtcaaaaagagactgttcaatatcttctgatattag
aattttaattaaaagtgatgggtgtttcgatttttcatttccttcattta
aacaagacttccaagcctgaaggcttaaatacaagccagaaataattaaa
atatataatgagagttatactttgagtaaacttttttatgtagtcccttt
cactatgttcacttcagtagttgatgatattaacctattcgaattgtcta
aatattggatgtggtcagtagactttaaaacccagacatctattacttac
tacttcttacaatgctgccttttgtgatatttattctaaccaaagaaata
taatcgtttctgcaattagaaactccatgatgagtgtgcctagatgatat
caagaaatactaacaatatttgattactctcatttgtagttctgtgagat
gtctcagttctaataatgtgtctctgtctttcaagtcaggcaagacttcc
agcctaatgacccctatgtgtagcatcacagcaaccagacagtagggtat
cactttccactattctcctatctgatcaccgagatatgagttcactggaa
cttcacccacaccaattccttgtggtcttagatgcaagcaaaatacgtat
ttcttttgcaacacttaatggaattactgcctacctggatttaacttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_15027359_15028475
seq2: B6Ng01-258D15.b_44_1159

seq1  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50

seq1  TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC  100

seq1  CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT  150

seq1  CTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA  200

seq1  TTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTT  250

seq1  CTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCAC  300

seq1  TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGCACCCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGCACCCTCT  350

seq1  CTTCTTTCTGTTCCTCTAAAGTTTATGGTCTCTTTTTCTATCACATTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTCTGTTCCTCTAAAGTTTATGGTCTCTTTTTCTATCACATTAAT  400

seq1  CTACATATGAAAATATATGACATCTGCTGGGCCCATTTAGCAATGTTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATATGAAAATATATGACATCTGCTGGGCCCATTTAGCAATGTTCAT  450

seq1  ATATACATAAACATTTTGGTTTTGGGATGACCACTTGGAATTGGACAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACATAAACATTTTGGTTTTGGGATGACCACTTGGAATTGGACAACC  500

seq1  TGTCAAGAACTCCTTCCTGGAGAAGTCTGATACTCGCCCTCTGTAGACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAGAACTCCTTCCTGGAGAAGTCTGATACTCGCCCTCTGTAGACAT  550

seq1  TGATTGCCTATAGCTAGTCATCTCGGGGTGGGGCCTGGCGAATGTGTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGCCTATAGCTAGTCATCTCGGGGTGGGGCCTGGCGAATGTGTACT  600

seq1  ATTTCTTTTTTATGTTCACCAGTGTTGAATTCTCTGCAATATGGTTACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTTTTATGTTCACCAGTGTTGAATTCTCTGCAATATGGTTACTG  650

seq1  AATAAGAATCTTACTGTTCCTCACAAGAATTTTGCAGTTTGAATTCTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAATCTTACTGTTCCTCACAAGAATTTTGCAGTTTGAATTCTCAT  700

seq1  GGTATGATCTTCAATCTACCTAGAATTTATTTTTCTCAGGAGCAGTTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGATCTTCAATCTACCTAGAATTTATTTTTCTCAGGAGCAGTTTTC  750

seq1  TCATTTTGTTCTGATCCTGTTTAAATAACCAGTTGCCCTTTGACCATTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTGTTCTGATCCTGTTTAAATAACCAGTTGCCCTTTGACCATTTC  800

seq1  CTGAAGTCTGTCCTTTGTCTATTCGTTTATAATGGTGTCTGCTACAATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTCTGTCCTTTGTCTATTCGTTTATAATGGTGTCTGCTACAATGA  850

seq1  CAACTTTCCATGTGTCTGACTCAAGGTTATTTATTGAATTACATTGATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTCCATGTGTCTGACTCAAGGTTATTTATTGAATTACATTGATCT  900

seq1  GTTTGTTGCTTTTCATATCAGTGATATTTGTCTTCGGGTTTGTGCTGCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTGCTTTTCATATCAGTGATATTTGTCTTCGGGTTTGTGCTGCAT  950

seq1  TACAGCTGATATCTGCTTTTGCTACGCTCCTTTCC-TTCAAGCTTTCTTT  999
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TACAGCTGATATCTGCTTTTGCTACGCTCCTTTCCTTTCAAGCTTTCTTT  1000

seq1  GGGCTTTATTTGTTCTTACACAGAGCATGAGCTTTGTCACTTGCATTCAA  1049
       |||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  -GGCTTTATTTGTTCTTACACAGAGCATGAGCTTTGTCACTTGCA-TCAA  1048

seq1  T--AAAAAAACACTGTTGGAATTTTAATGAAAACAGTAA-CTCT--GTAT  1094
      |  ||||||| |||||||    ||| ||||||| ||||| ||||   |||
seq2  TAAAAAAAAAAACTGTTG---ATTTCATGAAAA-AGTAACCTCTTGTTAT  1094

seq1  ACCAGAACATACTTAAATATCCT  1117
      | ||||||||||| ||  |||||
seq2  A-CAGAACATACTAAATAATCCT  1116

seq1: chr1_15160118_15161281
seq2: B6Ng01-258D15.g_67_1215 (reverse)

seq1  TCAAGTTAAATTAAATCCA-GTAGGCAGAAAATTCAATATAGTGTTGCAA  49
      |||||     ||||||||| ||||||||  ||||| ||  ||||||||||
seq2  TCAAG-----TTAAATCCAGGTAGGCAG-TAATTCCATTAAGTGTTGCAA  44

seq1  AAGAAAATAACGTATTTTGCTTTGCATCCTAAGGACCAACAAGGGAATGG  99
      ||||||   ||||||||||| |||||| |||| |||| |||||| | |||
seq2  AAGAAA--TACGTATTTTGC-TTGCAT-CTAA-GACC-ACAAGGAATTGG  88

seq1  TGTGGGTGAAGTTTCCAGTGAAACTTCATATCTCGGTGATCAGATAGGAG  149
      ||||||||||| ||||||||||   |||||||||||||||||||||||||
seq2  TGTGGGTGAAG-TTCCAGTGAA--CTCATATCTCGGTGATCAGATAGGAG  135

seq1  AATAGTGGAAAGTGATACCCTACTGTCTGGTTGCTGTGATGCTACACATA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTGGAAAGTGATACCCTACTGTCTGGTTGCTGTGATGCTACACATA  185

seq1  GGGGTCATTAGGCTGGAAGTCTTGCCTGACTTGAAAGACAGAGACACATT  249
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGGGTCATTAGGCTGGAAGTCTTGCCTGACTTGAAAGACAGAGACACA-T  234

seq1  TATTAGAACTGAGACATCTCACAGAACTACAAATGAGAGTAATCAAATAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGAACTGAGACATCTCACAGAACTACAAATGAGAGTAATCAAATAT  284

seq1  TGTTAGTATTTCTTGATATCATCTAGGCACACTCATCATGGAGTTTCTAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTATTTCTTGATATCATCTAGGCACACTCATCATGGAGTTTCTAA  334

seq1  TTGCAGAAACGATTATATTTCTTTGGTTAGAATAAATATCACAAAAGGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGAAACGATTATATTTCTTTGGTTAGAATAAATATCACAAAAGGCA  384

seq1  GCATTGTAAGAAGTAGTAAGTAATAGATGTCTGGGTTTTAAAGTCTACTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTAAGAAGTAGTAAGTAATAGATGTCTGGGTTTTAAAGTCTACTG  434

seq1  ACCACATCCAATATTTAGACAATTCGAATAGGTTAATATCATCAACTACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATCCAATATTTAGACAATTCGAATAGGTTAATATCATCAACTACT  484

seq1  GAAGTGAACATAGTGAAAGGGACTACATAAAAAAGTTTACTCAAAGTATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGAACATAGTGAAAGGGACTACATAAAAAAGTTTACTCAAAGTATA  534

seq1  ACTCTCATTATATATTTTAATTATTTCTGGCTTGTATTTAAGCCTTCAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCATTATATATTTTAATTATTTCTGGCTTGTATTTAAGCCTTCAGG  584

seq1  CTTGGAAGTCTTGTTTAAATGAAGGAAATGAAAAATCGAAACACCCATCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAGTCTTGTTTAAATGAAGGAAATGAAAAATCGAAACACCCATCA  634

seq1  CTTTTAATTAAAATTCTAATATCAGAAGATATTGAACAGTCTCTTTTTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAATTAAAATTCTAATATCAGAAGATATTGAACAGTCTCTTTTTGA  684

seq1  CAAAACCAGTCCCAACAGTACTTTTTTGTCTTTACAGTTAATAATTAATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCAGTCCCAACAGTACTTTTTTGTCTTTACAGTTAATAATTAATT  734

seq1  TAATGATTTTTCTCTGCCATATTTAATATTAGGATGTATGGTGCTTGATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATTTTTCTCTGCCATATTTAATATTAGGATGTATGGTGCTTGATT  784

seq1  AGGAGGCAGAACCTTGATGTTTTTAAATTATTTCTTGCTATAAAAATAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCAGAACCTTGATGTTTTTAAATTATTTCTTGCTATAAAAATAAA  834

seq1  TCTCCATATCAGAGTCAGGTCCTTGATTCAACATGAATGTCCAATTACTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATATCAGAGTCAGGTCCTTGATTCAACATGAATGTCCAATTACTT  884

seq1  GTAGAGGTCTAACATTCATGGGAATAAATTGTTATTCTGCAGATTTCTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGGTCTAACATTCATGGGAATAAATTGTTATTCTGCAGATTTCTTA  934

seq1  ACAGATCTATTATCTATGAAACTGAAGCTTCATCTTTGGCTGTGAATATA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATCTATTATCTATGAAACTGAAGCTTCATCTTTGGCTGTGAATATA  984

seq1  TAATGCCATCTTTAATTCTTTTGGATCTTCGGGAAGTATGACTTACCTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCCATCTTTAATTCTTTTGGATCTTCGGGAAGTATGACTTACCTTT  1034

seq1  GGAAAGCATGTCAACGTATTCCTAGGAGTGTTCAAGAAAAATGAAAAAAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCATGTCAACGTATTCCTAGGAGTGTTCAAGAAAAATGAAAAAAG  1084

seq1  AAACTTTAGACTTTCAAGTCAACATCTTCAAAGTTCTAGGTAATAATTAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTAGACTTTCAAGTCAACATCTTCAAAGTTCTAGGTAATAATTAT  1134

seq1  TTCAGCCTGGAATTC  1164
      |||||||||||||||
seq2  TTCAGCCTGGAATTC  1149