BAC Information

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BAC

Clone NameB6Ng01-258I20
Chromosome1 (Build37)
Map Location 151,412,180 - 151,413,279
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042792, LOC435647
Downstream geneLOC100042813, Pla2g4a, Ptgs2, LOC676712, LOC100043257, LOC100043261, Pdc, BC003331, Tpr, EG625534
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258I20.bB6Ng01-258I20.g
ACCGA063962GA063963
length1,2151,091
definitionB6Ng01-258I20.b B6Ng01-258I20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctttaatagggacggggtttcgttttctctctctcttgcttct
tgctctcttgcttcttgcactctggctcctgaagatgtaagcaataaagc
tttgccgcagaagattctggtctgtggtgtctttcctggccggtcgtgag
aacgcgtctaataacaattggtgccgaattccgggacgagaaaaaactcg
ggactggcgcaaggaagatccctcattccagaaccagaactgcgggtcgc
ggtaataaaggttcccgtaaagcagactgttaagaaggattcaactgtat
gaattcagaacttttcagctggggaacgagagtaccagtgagtacagctt
tacgaggtaagcctggccttgaactttctaaggaaattcaagacagtcta
tcagaagtaaagtggaatatgtttggccttgaattttttctggtgttaga
agcccttttgttccttttcacatgttatcaagtggttaaggcagggagga
ttctagatgaaattcaggacaagctatcagaagtaaagcggggagagaga
gtaggagcaaagagaaaatatggtacacaaaataagtatacaggcctttc
cacgggtcttgaacccgaggaaaagtttaggtcaggtaagaatacctggg
gagagattagaaggaaggaaaagaaaaaagaaaagaaaaaagatcgatta
gcggaggtctctaggagatactcgtcactagatgagctcaggaagccagc
tcttagtagttctgaagcagatgaagaattctcctctgaggaaacagact
gggaggaagaagcagcccattaccagccagctaattggtcaagaaaaaag
ccaaaagcggctggcgaaagccagcgtactgttcaacctcagggcagtcg
gtttcaaggtccgccctatgcggagtccccgccctgcgtagtgcgtcagc
aatgcgcagagaggcagtgcgcagagaggcagtgcgcagactcattcatt
cctcagagaggaacaaaggaaaatacaacagcatttccggttctttgaag
gagccgagggtgggcgtgttccaccgcctccggtagaaatactacaattt
aaagaaattgccgagtccggtccgtaatacgatcaatgctaattttacct
ggtccagtagaagctcgccggcatgcaccattactctcctgcccgaaccg
tggccaacacgaatg
gaattctctaggatgacaacaagatttgtcaccggcagctccttgacaag
ctgaagagagaaaagagcaaggagatggaatgaaattgcaccacaatgca
gcctccgaaggctcagtggaaggatgctgcccgatatgacagctgagcaa
gtcaccagaaatgttacaggcaagacaggcagctctgagacaagacaatg
cttcacacaggattggaaggagctccaacaaggaaagttttaaaatgtct
tatctgaacccatgtatgtataagggtatataagtaagtcctctacagtg
agttacttacatatatttaaattacagaaacacagagttcatatctggag
atgaggaaacagcaaagcctgtggaaagggggacagaaaatggctttgaa
aaattggttgaaaacacagcgtggggttatgtacgcccatagatgtgacc
cagggtggatggtggttcctgtcttaggtcagtcatgggcaatcacttgt
aattttcctcaatgcccttcaagttgaaagacattcatctttaatacaac
catcttactccccagcccccaatgtgtgccaacaaaataagtgtttttat
cagtgactaaaacattgagaccaaccagcttgggatgttgttctataatg
taaccatgtttatattctttttctcctagggtaatttagcatagtcttat
gtgctctctatgtacttttgacaggatgaaatcagggcagcctcacaggc
agaggggaaaatggttgtgagaatatgtcacagtctattggaaagcttgt
cctgaacagtaaagacattgtaataatggattaaattgtgggcagtattt
gcttagtaactccctgagatgactaagcaattgacagcgattctccgaaa
catttacagatgcttgcacagctattgtaatgtaatgaagttgtcaaaaa
aagattagtacttcatatattgaaaggtgttctaaatatagtatctcttg
agtgtatggatgttcagtatgtctctctctccctctctctcctcttccat
tctgtctgttttatctcctaccttcgtctctatcctctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_151412180_151413279
seq2: B6Ng01-258I20.g_69_1159 (reverse)

seq1  CAGAGAAGATAGAGACAGAAGTAGGGAGATAAAAACAGACAGAAATGGAA  50
      |||||| ||||||||| ||||   |||||| ||||||||||| ||||| |
seq2  CAGAGAGGATAGAGAC-GAAGGTAGGAGAT-AAAACAGACAG-AATGG-A  46

seq1  AGAGGGAGAGAGAGGGAGAGAGAGAACATACTTGAACATCCATACACTCA  100
      ||| |||||||||||||||||||| |||||| ||||||||||||||||||
seq2  AGA-GGAGAGAGAGGGAGAGAGAG-ACATAC-TGAACATCCATACACTCA  93

seq1  AGAGATACTATTATTTAGAACACCTTTCAATATATGAAGTACTAATCTTT  150
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGAGATACTA-TATTTAGAACACCTTTCAATATATGAAGTACTAATCTTT  142

seq1  TTTTGACAACTTCATTACATTTACAATAGCTGTGCAAGCATCTGTAAATG  200
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTTTGACAACTTCATTACA-TTACAATAGCTGTGCAAGCATCTGTAAATG  191

seq1  TTTCGGAGAATCGCTGTCAATTGCTTAGTCATCTCAGGGAGTTACTAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGGAGAATCGCTGTCAATTGCTTAGTCATCTCAGGGAGTTACTAAGC  241

seq1  AAATACTGCCCACAATTTAATCCATTATTACAATGTCTTTACTGTTCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTGCCCACAATTTAATCCATTATTACAATGTCTTTACTGTTCAGG  291

seq1  ACAAGCTTTCCAATAGACTGTGACATATTCTCACAACCATTTTCCCCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTTTCCAATAGACTGTGACATATTCTCACAACCATTTTCCCCTCT  341

seq1  GCCTGTGAGGCTGCCCTGATTTCATCCTGTCAAAAGTACATAGAGAGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGAGGCTGCCCTGATTTCATCCTGTCAAAAGTACATAGAGAGCAC  391

seq1  ATAAGACTATGCTAAATTACCCTAGGAGAAAAAGAATATAAACATGGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACTATGCTAAATTACCCTAGGAGAAAAAGAATATAAACATGGTTA  441

seq1  CATTATAGAACAACATCCCAAGCTGGTTGGTCTCAATGTTTTAGTCACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATAGAACAACATCCCAAGCTGGTTGGTCTCAATGTTTTAGTCACTG  491

seq1  ATAAAAACACTTATTTTGTTGGCACACATTGGGGGCTGGGGAGTAAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAACACTTATTTTGTTGGCACACATTGGGGGCTGGGGAGTAAGATG  541

seq1  GTTGTATTAAAGATGAATGTCTTTCAACTTGAAGGGCATTGAGGAAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTATTAAAGATGAATGTCTTTCAACTTGAAGGGCATTGAGGAAAATT  591

seq1  ACAAGTGATTGCCCATGACTGACCTAAGACAGGAACCACCATCCACCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGATTGCCCATGACTGACCTAAGACAGGAACCACCATCCACCCTG  641

seq1  GGTCACATCTATGGGCGTACATAACCCCACGCTGTGTTTTCAACCAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACATCTATGGGCGTACATAACCCCACGCTGTGTTTTCAACCAATTT  691

seq1  TTCAAAGCCATTTTCTGTCCCCCTTTCCACAGGCTTTGCTGTTTCCTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGCCATTTTCTGTCCCCCTTTCCACAGGCTTTGCTGTTTCCTCAT  741

seq1  CTCCAGATATGAACTCTGTGTTTCTGTAATTTAAATATATGTAAGTAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGATATGAACTCTGTGTTTCTGTAATTTAAATATATGTAAGTAACT  791

seq1  CACTGTAGAGGACTTACTTATATACCCTTATACATACATGGGTTCAGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTAGAGGACTTACTTATATACCCTTATACATACATGGGTTCAGATA  841

seq1  AGACATTTTAAAACTTTCCTTGTTGGAGCTCCTTCCAATCCTGTGTGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTTTAAAACTTTCCTTGTTGGAGCTCCTTCCAATCCTGTGTGAAG  891

seq1  CATTGTCTTGTCTCAGAGCTGCCTGTCTTGCCTGTAACATTTCTGGTGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCTTGTCTCAGAGCTGCCTGTCTTGCCTGTAACATTTCTGGTGAC  941

seq1  TTGCTCAGCTGTCATATCGGGCAGCATCCTTCCACTGAGCCTTCGGAGGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAGCTGTCATATCGGGCAGCATCCTTCCACTGAGCCTTCGGAGGC  991

seq1  TGCATTGTGGTGCAATTTCATTCCATCTCCTTGCTCTTTTCTCTCTTCAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGTGGTGCAATTTCATTCCATCTCCTTGCTCTTTTCTCTCTTCAG  1041

seq1  CTTGTCAAGGAGCTGCCGGTGACAAATCTTGTTGTCATCCTAGAGAATTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCAAGGAGCTGCCGGTGACAAATCTTGTTGTCATCCTAGAGAATTC  1091