BAC Information

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BAC

Clone NameB6Ng01-258N16
Chromosome1 (Build37)
Map Location 37,958,937 - 38,101,425
singlet/doubletdoublet
Overlap geneGm776, 2300002O18Rik, Txndc9, EG666434, Eif5b
Upstream geneTmem131, EG241053, A230074B11Rik, 4921511C04Rik, Cnga3, Inpp4a, 6330578E17Rik, Unc50, Mgat4a, 2010300C02Rik, Tsga10, EG623661, Mitd1, Mrpl30
Downstream geneRev1, EG329123, Aff3, Lonrf2, Chst10, EG625775, Nms, Pdcl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258N16.bB6Ng01-258N16.g
ACCGA064186GA064187
length1,1631,097
definitionB6Ng01-258N16.b B6Ng01-258N16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,100,252 - 38,101,425)(37,958,937 - 37,960,035)
sequence
gaattcaggcattttcttgtacaaaaggcccccgttagagactgtgcaaa
tgaagctctcagatgagaaactgctgaggtggcatgctgtccattttagc
ctccagtgagttggtgtaaacctgctctctgcagaacagaaggtcctaga
atgatcctatgaacactaacatgtgagttattaaatcagcagataggcaa
ggactgatgacagcaagtgccagtcaggatgacgtagtaactgcttcctt
gctcaatctagaaataatcagtctgactagttaataacaagagactattt
cctcacttgtcaatctgtgagatatttcaggtgaaggaaatgctatctgc
aaacagaaatcaatatactgaacctgtaaatctatccaattatgcatcaa
tctaaaagatactaattttgtttatccatatctcccctgtgagtatgaga
ataagagaaggaattaatcactaaataatgacagagactgtgtcacctga
cagcgagcccacactgacaaggtaaggaagcagctttgtctgtcactaag
agaaaacccagttaaggagggacagacctaagatgactgtcaggatcaaa
ttactgcttgaggtctttaaaataatttctgaaaatatacttaacatttg
ttctaaccttgacaaaaaggcaaaaagaaaaagggctaatgtttgtagag
ctgaaggaaaacctgagatgatctaaaaacccagttttactggaaaaaga
aaagataagtgatcttgaagacagagcactgagaagcagcaacaccgcac
agagagaatctgattgggggaaaaatactccgccctagcttgtttatcat
gtgacattaagtaataaatttagtagagaatatctgaacaatcaccaata
aagataaagactagatgaacactaatataattcatacaactcaaatatga
ttgacctattacacaatcacacagataaaattctaaaaaggagaagtctt
aaaagtagcatataaaaaacacgcagagtacaggaaagatggagcagcaa
aagtcaggaaaacatttaggaaaaagtagaattccataacaagtgaaaat
atcttcagaatgatgcttttgaagaaacacatttttgttcattaaaagaa
ggtaaacgagctt
gaattctaggggagactcagtagtgggaagcccgtgcagctcattaaagg
agagcctgcgttcttgtgccctttgctttgctttgtccttggtaattttc
agctcaggccacaccaacatttgcaaactcttttgttccagtgttctggc
acaggtcttaatgttgagtacttatcaaggcaaaagcgtcattgaactac
aagcctgaaatcagcttttatttattaatgagctgaaagccaattgcagt
tttaatttattaattattgtatgtctggtatatgtgtggcctagaggaaa
caggagcccaaaggccactttaaaatggtgtctagttggagagaaacctg
cccatttagtgccacaagcatacccctgcctacagtgggcttggaaaatc
ctgtatacgtaggaactattctatgtcaccctttggtgttaatgttacta
tggagacctggagaaactaggttggttttgttttgttttctctaaagagt
tgcagtttgggtaatcatcttaacttcagcagcccaccaccggaaggatt
gttacgctgaatatttagaaaatgaagatgtctaaagaagagacagtcaa
gagcataggccgagggggcggctctctgttgttacacaggcaaagctgca
taaagcacgcgcttcctcatggtttctgtgaggctgcagagtggtcagag
cccagctggtagcctgcttagaccagcggtgctcattcttcctgatgctg
ggtccctttaatgcagttcctcatgtggtggtgacccccaaccaaaaaac
tcttttgttgctacttcataactgcagttttgctactgttgtgaattgta
atgtaaatatctgtgtttcccaatggtcctagatgacccctgggaaaggt
cattttcatccccaaagggactgactacctacaggttgagaaccactggc
ttagtgtctcacggagctgcaatacatactttctgctaataatgtgtggt
tctcagagttaatgtggagcagattcttacttccagattctgagcttgtg
cagattcacttttttttgtgactgtagatgggcagtcacttcttcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_38100252_38101425
seq2: B6Ng01-258N16.b_49_1211 (reverse)

seq1  AAGCTCTGTTACCTTTCTTTTTAATG-ACAAAAATGTGTTTCTTCAAAAG  49
      ||||||  |||||||   |||||||| |||||||||||||||||||||||
seq2  AAGCTCGTTTACCTT--CTTTTAATGAACAAAAATGTGTTTCTTCAAAAG  48

seq1  CATCATTCTTGAAGATATTTTCACTTGTTATGGAATTCTACTTTTTTCCC  99
      |||||||| |||||||||||||||||||||||||||||||||||||   |
seq2  CATCATTC-TGAAGATATTTTCACTTGTTATGGAATTCTACTTTTT---C  94

seq1  TTAAATGTTTTCCTG-CTTTTGCTGCTTCCATCTTTTCCTGTTACTCTGC  148
       |||||||||||||| |||||||||| |||||| ||||||| ||||||||
seq2  CTAAATGTTTTCCTGACTTTTGCTGC-TCCATC-TTTCCTG-TACTCTGC  141

seq1  GTGTTTTTTATATTGCTTACTTTTAAGACTTTCTCCTTTTTAGAATTTTA  198
      |||||||||||| ||| |||||||||||| ||||||||||||||||||||
seq2  GTGTTTTTTATA-TGC-TACTTTTAAGAC-TTCTCCTTTTTAGAATTTTA  188

seq1  TCTGTGTGATTGTGTAATAGGTCAATCATATTTGAGTTGTATTGAATTAT  248
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCTGTGTGATTGTGTAATAGGTCAATCATATTTGAGTTGTA-TGAATTAT  237

seq1  ATTAGTGTTCATCTAGTCTTTATCTTTATTGGTGATTGTTCAGATATTCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTGTTCATCTAGTCTTTATCTTTATTGGTGATTGTTCAGATATTCT  287

seq1  CTACTAAATTTATTACTTAATGTCACATGATAAACAAGCTAGGGCGGAGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAAATTTATTACTTAATGTCACATGATAAACAAGCTAGGGCGGAGT  337

seq1  ATTTTTCCCCCAATCAGATTCTCTCTGTGCGGTGTTGCTGCTTCTCAGTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCCCCCAATCAGATTCTCTCTGTGCGGTGTTGCTGCTTCTCAGTG  387

seq1  CTCTGTCTTCAAGATCACTTATCTTTTCTTTTTCCAGTAAAACTGGGTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTTCAAGATCACTTATCTTTTCTTTTTCCAGTAAAACTGGGTTT  437

seq1  TTAGATCATCTCAGGTTTTCCTTCAGCTCTACAAACATTAGCCCTTTTTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATCATCTCAGGTTTTCCTTCAGCTCTACAAACATTAGCCCTTTTTC  487

seq1  TTTTTGCCTTTTTGTCAAGGTTAGAACAAATGTTAAGTATATTTTCAGAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCCTTTTTGTCAAGGTTAGAACAAATGTTAAGTATATTTTCAGAA  537

seq1  ATTATTTTAAAGACCTCAAGCAGTAATTTGATCCTGACAGTCATCTTAGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTAAAGACCTCAAGCAGTAATTTGATCCTGACAGTCATCTTAGG  587

seq1  TCTGTCCCTCCTTAACTGGGTTTTCTCTTAGTGACAGACAAAGCTGCTTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCCTCCTTAACTGGGTTTTCTCTTAGTGACAGACAAAGCTGCTTC  637

seq1  CTTACCTTGTCAGTGTGGGCTCGCTGTCAGGTGACACAGTCTCTGTCATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTTGTCAGTGTGGGCTCGCTGTCAGGTGACACAGTCTCTGTCATT  687

seq1  ATTTAGTGATTAATTCCTTCTCTTATTCTCATACTCACAGGGGAGATATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTGATTAATTCCTTCTCTTATTCTCATACTCACAGGGGAGATATG  737

seq1  GATAAACAAAATTAGTATCTTTTAGATTGATGCATAATTGGATAGATTTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACAAAATTAGTATCTTTTAGATTGATGCATAATTGGATAGATTTA  787

seq1  CAGGTTCAGTATATTGATTTCTGTTTGCAGATAGCATTTCCTTCACCTGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTCAGTATATTGATTTCTGTTTGCAGATAGCATTTCCTTCACCTGA  837

seq1  AATATCTCACAGATTGACAAGTGAGGAAATAGTCTCTTGTTATTAACTAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTCACAGATTGACAAGTGAGGAAATAGTCTCTTGTTATTAACTAG  887

seq1  TCAGACTGATTATTTCTAGATTGAGCAAGGAAGCAGTTACTACGTCATCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTGATTATTTCTAGATTGAGCAAGGAAGCAGTTACTACGTCATCC  937

seq1  TGACTGGCACTTGCTGTCATCAGTCCTTGCCTATCTGCTGATTTAATAAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGCACTTGCTGTCATCAGTCCTTGCCTATCTGCTGATTTAATAAC  987

seq1  TCACATGTTAGTGTTCATAGGATCATTCTAGGACCTTCTGTTCTGCAGAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGTTAGTGTTCATAGGATCATTCTAGGACCTTCTGTTCTGCAGAG  1037

seq1  AGCAGGTTTACACCAACTCACTGGAGGCTAAAATGGACAGCATGCCACCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTTTACACCAACTCACTGGAGGCTAAAATGGACAGCATGCCACCT  1087

seq1  CAGCAGTTTCTCATCTGAGAGCTTCATTTGCACAGTCTCTAACGGGGGCC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTTTCTCATCTGAGAGCTTCATTTGCACAGTCTCTAACGGGGGCC  1137

seq1  TTTTGTACAAGAAAATGCCTGAATTC  1174
      ||||||||||||||||||||||||||
seq2  TTTTGTACAAGAAAATGCCTGAATTC  1163

seq1: chr1_37958937_37960035
seq2: B6Ng01-258N16.g_66_1162

seq1  GAATTCTAGGGGAGACTCAGTAGTGGGAAGCCCGTGCAGCTCATTAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGGGAGACTCAGTAGTGGGAAGCCCGTGCAGCTCATTAAAGG  50

seq1  AGAGCCTGCGTTCTTGTGCCCTTTGCTTTGCTTTGTCCTTGGTAATTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTGCGTTCTTGTGCCCTTTGCTTTGCTTTGTCCTTGGTAATTTTC  100

seq1  AGCTCAGGCCACACCAACATTTGCAAACTCTTTTGTTCCAGTGTTCTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGGCCACACCAACATTTGCAAACTCTTTTGTTCCAGTGTTCTGGC  150

seq1  ACAGGTCTTAATGTTGAGTACTTATCAAGGCAAAAGCGTCATTGAACTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCTTAATGTTGAGTACTTATCAAGGCAAAAGCGTCATTGAACTAC  200

seq1  AAGCCTGAAATCAGCTTTTATTTATTAATGAGCTGAAAGCCAATTGCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGAAATCAGCTTTTATTTATTAATGAGCTGAAAGCCAATTGCAGT  250

seq1  TTTAATTTATTAATTATTGTATGTCTGGTATATGTGTGGCCTAGAGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTATTAATTATTGTATGTCTGGTATATGTGTGGCCTAGAGGAAA  300

seq1  CAGGAGCCCAAAGGCCACTTTAAAATGGTGTCTAGTTGGAGAGAAACCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCCCAAAGGCCACTTTAAAATGGTGTCTAGTTGGAGAGAAACCTG  350

seq1  CCCATTTAGTGCCACAAGCATACCCCTGCCTACAGTGGGCTTGGAAAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTAGTGCCACAAGCATACCCCTGCCTACAGTGGGCTTGGAAAATC  400

seq1  CTGTATACGTAGGAACTATTCTATGTCACCCTTTGGTGTTAATGTTACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATACGTAGGAACTATTCTATGTCACCCTTTGGTGTTAATGTTACTA  450

seq1  TGGAGACCTGGAGAAACTAGGTTGGTTTTGTTTTGTTTTCTCTAAAGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACCTGGAGAAACTAGGTTGGTTTTGTTTTGTTTTCTCTAAAGAGT  500

seq1  TGCAGTTTGGGTAATCATCTTAACTTCAGCAGCCCACCACCGGAAGGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTTGGGTAATCATCTTAACTTCAGCAGCCCACCACCGGAAGGATT  550

seq1  GTTACGCTGAATATTTAGAAAATGAAGATGTCTAAAGAAGAGACAGTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACGCTGAATATTTAGAAAATGAAGATGTCTAAAGAAGAGACAGTCAA  600

seq1  GAGCATAGGCCGAGGGGGCGGCTCTCTGTTGTTACACAGGCAAAGCTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATAGGCCGAGGGGGCGGCTCTCTGTTGTTACACAGGCAAAGCTGCA  650

seq1  TAAAGCACGCGCTTCCTCATGGTTTCTGTGAGGCTGCAGAGTGGTCAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCACGCGCTTCCTCATGGTTTCTGTGAGGCTGCAGAGTGGTCAGAG  700

seq1  CCCAGCTGGTAGCCTGCTTAGACCAGCGGTGCTCATTCTTCCTGATGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTGGTAGCCTGCTTAGACCAGCGGTGCTCATTCTTCCTGATGCTG  750

seq1  GGTCCCTTTAATGCAGTTCCTCATGTGGTGGTGACCCCCAACCAAAAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCTTTAATGCAGTTCCTCATGTGGTGGTGACCCCCAACCAAAAAAC  800

seq1  TCTTTTGTTGCTACTTCATAACTGCAGTTTTGCTACTGTTGTGAATTGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGTTGCTACTTCATAACTGCAGTTTTGCTACTGTTGTGAATTGTA  850

seq1  ATGTAAATATCTGTGTTTCCCAATGGTCCTAGATGACCCCTGGGAAAAGG  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATGTAAATATCTGTGTTTCCCAATGGTCCTAGATGACCCCTGGG-AAAGG  899

seq1  TCA-TTTCATCCCCAAA-GGACTGACTACCTACAGGTTGAGAACCACTGG  948
      ||| ||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCATTTTCATCCCCAAAGGGACTGACTACCTACAGGTTGAGAACCACTGG  949

seq1  CTTAGTGTCTCACGGAGCTGCAATACATACTTCCTGCTAATAATGTGTGG  998
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTTAGTGTCTCACGGAGCTGCAATACATACTTTCTGCTAATAATGTGTGG  999

seq1  TTCTCAGAGTTAAATGT-GAGCAGGAATC-TACTTCCAGATTCTGAGCTT  1046
      ||||||||||| ||||| ||||| || || ||||||||||||||||||||
seq2  TTCTCAGAGTT-AATGTGGAGCA-GATTCTTACTTCCAGATTCTGAGCTT  1047

seq1  GTTGGCAGAATTCAC--TTTTTTGTGACTGTAGAATGGGCAAGTCACCTC  1094
      ||  |||| ||||||  |||||||||||||||| |||||| |||||| ||
seq2  GT--GCAG-ATTCACTTTTTTTTGTGACTGTAG-ATGGGC-AGTCACTTC  1092

seq1  TTCAA  1099
      |||||
seq2  TTCAA  1097