BAC Information

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BAC

Clone NameB6Ng01-259J02
Chromosome1 (Build37)
Map Location 79,475,003 - 79,475,925
singlet/doubletsinglet
Overlap genenone
Upstream geneFarsb, Mogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260, EG545332, Scg2
Downstream geneAp1s3, Wdfy1, Mrpl44, Serpine2, EG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik, Cul3, EG620899, 1700016L21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259J02.bB6Ng01-259J02.g
ACCGA064715GA064716
length1,118933
definitionB6Ng01-259J02.b B6Ng01-259J02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgagtatttttgc
atcgatattaataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggaagagtaccttctacttctatcttgtgaaaaagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggcttttttttttggctgggagactatttataactgcttctatt
tctttagggaatatgggactgtttagaaggtcaacttgatcctgattcaa
cattggtacctggtatctgtccagaaatttgtccatttcgtccaggtttt
ccagttttgttgagtatagccttttgtagaaggatctgatggtgttttgg
atttcttcaggatctgttgttatgtctcccttttcatttctgattttgtt
aattaggattttgtccctgtgccctctagtgagtctagctaagggtttat
ctatcttgttgattttctcaaagaaccaactcctcgtttggttaattctt
tgaatagttcttcttgtttccacttggttggtttcacccctgagtttgat
tatttcctgccgtctactcctcttgggtgaatttgcttccttttttctag
agcttttagatgtgttgtcaagctgttagtatgtgctctctcccgtttct
tcttggaggcactcagagctatgagtttccttcttagaaatgccttcatt
caggaattttttcctgtgcccatatcttcaaggctttcccaactttctcc
tctataaggttcagtgttcctcttggttttatagtgggaagatccttgat
atccacttagaaatctga
gaattcttgctggcgagatactagctcgggataagatccctctccccaaa
ctgttaaatacacaaaactaacatgaagagggaacaatattgatgaaaga
acatttgatagttttttttttgtttttttttttttttttttagatatacg
ctggttaaaaataagaataaactaaaagaaatagcttcctttgagtgtct
tccttttcaactccaatttggttcatttctcttgattcctcctttttcag
attaattctcatttattttaggtgtgtatcattagaacatctgggcctct
ttggtggcattttcactgacccttttctcagccatgggccaggagctaaa
aactcctggccctgcatggaaccttctgaactattttgtctgaccacttg
gaatgtgaatgccctaggatagaacacaacaacacacacacaaaaactga
aaactccccctaaaccaaacacagcacaacgggatcatggctctacaaac
tgtttcatatatgagaacccagaggaatttgagtttgaagttcctattgc
tcagcatgtgatgaactttccttggcacatattaaaatatagcattaata
gaagatttaaaggaagagctatgttactagggcgactgttgtgctggggt
atgtggagggatagggtacagggcaaacgaagcctacagagatgagtcac
atttaacagaagacctctttataacatgtgtttttaaaggaggacaatga
ttgtcctctctgaagtttcatccatacataaaccgaagagtttggcatca
agttgaatgctgcttctgattactgaaggcatgcactgtgggggttacca
tgtatgggatacttgaaccagattgcctgggttaaaatatgaacccatcc
acatgtctgttgtatggggagcttctgactgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_79475003_79475925
seq2: B6Ng01-259J02.g_70_1002 (reverse)

seq1  AACAATCAGAAACT-CCCATAC-ACAG-CATGT-GATGGGGTCATATTTT  46
      |||| |||||| || ||||||| |||| ||||| |||||| |||||||||
seq2  AACAGTCAGAAGCTCCCCATACAACAGACATGTGGATGGGTTCATATTTT  50

seq1  AA-CCAGGCAATCTTGTTCAAGTAT-CCATACAT-GTAAACACCACAGTG  93
      || ||||||||||| |||||||||| |||||||| |||| | ||||||||
seq2  AACCCAGGCAATCTGGTTCAAGTATCCCATACATGGTAACCCCCACAGTG  100

seq1  CATGCC-TCAGTAATCAGGAGCAGCATTCAACTTGATGCC-AACTCTTCG  141
      |||||| ||||||||||| ||||||||||||||||||||| |||||||||
seq2  CATGCCTTCAGTAATCAGAAGCAGCATTCAACTTGATGCCAAACTCTTCG  150

seq1  GTTTATGTATGGATGAAACTTCAGAGAGGACAATCATTGTCCTCCTTTAA  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGTATGGATGAAACTTCAGAGAGGACAATCATTGTCCTCCTTTAA  200

seq1  AAACACATGTTATAAAGAGGTCTTCTGTT-AATGTGACTCATCTCTGTAG  240
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAACACATGTTATAAAGAGGTCTTCTGTTAAATGTGACTCATCTCTGTAG  250

seq1  GCTTCGTTTGCCCTGTACCCTATCCCTCCACATACCCCAGCACAACAGTC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCGTTTGCCCTGTACCCTATCCCTCCACATACCCCAGCACAACAGTC  300

seq1  GCCCTAGTAACATAGCTCTTCCTTTAAATCTTCTATTAATGCTATATTTT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAGTAACATAGCTCTTCCTTTAAATCTTCTATTAATGCTATATTTT  350

seq1  AATATGTGCCAAGGAAAGTTCATCACATGCTGAGCAATAGGAACTTCAAA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTGCCAAGGAAAGTTCATCACATGCTGAGCAATAGGAACTTCAAA  400

seq1  CTCAAATTCCTCTGGGTTCTCATATATGAAACAGTTTGTAGAGCCATGAT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATTCCTCTGGGTTCTCATATATGAAACAGTTTGTAGAGCCATGAT  450

seq1  CCCGTTGTGCTGTGTTTGGTTTAGGGGGAGTTTTCAGTTTTTGTGTGTGT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTTGTGCTGTGTTTGGTTTAGGGGGAGTTTTCAGTTTTTGTGTGTGT  500

seq1  GTTGTTGTGTTCTATCCTAGGGCATTCACATTCCAAGTGGTCAGACAAAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTGTTCTATCCTAGGGCATTCACATTCCAAGTGGTCAGACAAAA  550

seq1  TAGTTCAGAAGGTTCCATGCAGGGCCAGGAGTTTTTAGCTCCTGGCCCAT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCAGAAGGTTCCATGCAGGGCCAGGAGTTTTTAGCTCCTGGCCCAT  600

seq1  GGCTGAGAAAAGGGTCAGTGAAAATGCCACCAAAGAGGCCCAGATGTTCT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGAAAAGGGTCAGTGAAAATGCCACCAAAGAGGCCCAGATGTTCT  650

seq1  AATGATACACACCTAAAATAAATGAGAATTAATCTGAAAAAGGAGGAATC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATACACACCTAAAATAAATGAGAATTAATCTGAAAAAGGAGGAATC  700

seq1  AAGAGAAATGAACCAAATTGGAGTTGAAAAGGAAGACACTCAAAGGAAGC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAATGAACCAAATTGGAGTTGAAAAGGAAGACACTCAAAGGAAGC  750

seq1  TATTTCTTTTAGTTTATTCTTATTTTTAACCAGCGTATATCTAAAAAAAA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTTTAGTTTATTCTTATTTTTAACCAGCGTATATCTAAAAAAAA  800

seq1  AAAAAAAAAAACAAAAAAAAAACTATCAAATGTTCTTTCATCAATATTGT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAACAAAAAAAAAACTATCAAATGTTCTTTCATCAATATTGT  850

seq1  TCCCTCTTCATGTTAGTTTTGTGTATTTAACAGTTTGGGGAGAGGGATCT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTTCATGTTAGTTTTGTGTATTTAACAGTTTGGGGAGAGGGATCT  900

seq1  TATCCCGAGCTAGTATCTCGCCAGCAAGAATTC  923
      |||||||||||||||||||||||||||||||||
seq2  TATCCCGAGCTAGTATCTCGCCAGCAAGAATTC  933