BAC Information

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BAC

Clone NameB6Ng01-262B05
Chromosome1 (Build37)
Map Location 162,699,205 - 162,843,401
singlet/doubletdoublet
Overlap geneRabgap1l, EG620750, Rc3h1
Upstream geneTnr, 4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp, Gpr52
Downstream geneSerpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18, EG435650, LOC100039623, LOC269134, Fasl, AI848100, EG665109
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262B05.bB6Ng01-262B05.g
ACCGA066586GA066587
length1,091748
definitionB6Ng01-262B05.b B6Ng01-262B05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(162,842,319 - 162,843,401)(162,699,205 - 162,699,955)
sequence
gaattcccagtacaaactggaggctcttaggagcctgcttgttggccagc
tcaccagcacaaagcagccagttgggttcactgagagattcttttgcaag
aacatccaaagaacacccaacatcctcttctggccacacattctgtacgg
tacacgcatcacagacatcacataccttgcaccagcaccccccaaatttc
atataacagctgatatcaaacaataaatttcaaaataaaactcaaagact
gggagctggagagatgtcacaactttctctaactctagctccaaaggatc
tgacattctctcaatagcctccaaggacactaagcaagtagttcttacac
atgaaaaacaacaacaaaaaagaaaagccagcagtggtggttcaacacct
ttaatccgagcactcaagaggcagaggcagaggcaggtggatccctgtaa
gttcgaggccagcccagtctacagattgaatgccagaaccaccaaggcta
caaagagactctctgtctcaagacaaaaacaaaaacaaaaatccaactaa
ccaacaacaaaaataaaaaactgaaaatgggggaaaaaaagacaatggca
atattagaaattactccatttctgacaaatttcttttttttttttttttc
cattttttattaggtatttaactcatttacatttccaatgctataccaaa
agtcccccatatccacccaccccttctgacaaatttctgaccattgctca
cccagtagttaatcctaaactatacaaagatttttttttaacttaatttt
taaagactatgtgtatatatgtgtatctgtgtgagtatatacatatgagt
gcagggcctgaagagatcagaagagagtgtcagatcccctggagtttaaa
ttacaggtagttgtaggtcactcagtatggggtgctagagaactcatgtc
ctttgcaagagtagtatgcatttttattttgtttgatttttgagacaggc
ctgatgctatttcaccaggctgggcctccacccagattctgctgttctct
gcctcccagtattcttaccacctccactgagccatcctctc
gaattcctggcccccaatcttcaaatgtggctatttgaatgccaaaatta
aaagacaattatctttggttaccaaaaactgaaggaataaagtgagtgtg
atggttaatattaaccatcaacttgatgagatttagaggattatgaaaac
aaacctcaggtctatctgtgagggattgcccaaattttaggttcactgag
gtgggaagacataccctaaacacaaggagtactagtccacaggttggaac
accagagtgaatagaaagggagaaagaaaatggacactctgcttcctaac
tataagcacaatgtgaccgatctgcctctgaattctgccaccatgccttg
atgtcatggaactggcagccaaaatagaccctgccttctttaaggtgctc
tggtcaggcattttgtcacagcaatgaggaaaataactaacacggtgtta
gtccggctatttgacctgctaaatcctgtggaacatgcagtactgcagtt
ctatgatgtttctctagcaacagagactatgcaagaacagtttttaagac
actgctattttaaacataaacaattcagcctattcttctggtctctccag
aaacttgaccggtatctactaagtacactagagggtagcttttaaaagtt
gtcagcaaacactttgatatacttcccttcaaaaatgaaatacaatgtcc
ccattttcttgagtgagggctgggttggttggttggtttggttggttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_162842319_162843401
seq2: B6Ng01-262B05.b_45_1135 (reverse)

seq1  GAGA-GATGGCTCAGT-GAGTGGTTAAGAATACTGGGAGGCAGAGACAGG  48
      |||| ||||||||||| |||  | ||||||||||||||||||||||   |
seq2  GAGAGGATGGCTCAGTGGAGGTGGTAAGAATACTGGGAGGCAGAGAACAG  50

seq1  CAG-ATCTGGGT-GAGG-CCAGCCTGGTGAAATAGCATCAGGCCCTGTCT  95
      ||| |||||||| |||| |||||||||||||||||||||||| |||||||
seq2  CAGAATCTGGGTGGAGGCCCAGCCTGGTGAAATAGCATCAGG-CCTGTCT  99

seq1  CAAAAATCAAACAAA--TAAAATGCATACTACTCTTGCAAAGGACATGAG  143
      |||||||||||||||   ||||||||||||||||||||||||||||||||
seq2  CAAAAATCAAACAAAATAAAAATGCATACTACTCTTGCAAAGGACATGAG  149

seq1  TTCTCTAGCA-CCCATACTGAGTGACCTACAACTACCTGTAATTTAAACT  192
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAGCACCCCATACTGAGTGACCTACAACTACCTGTAATTTAAACT  199

seq1  CCAGGGGATCTGACACTCTCTTCTGATCTCTTCAGGCCCTGCACTCATAT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGATCTGACACTCTCTTCTGATCTCTTCAGGCCCTGCACTCATAT  249

seq1  GTATATACTCACACAGATACACATATATACACATAGTCTTTAAAAATTAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATACTCACACAGATACACATATATACACATAGTCTTTAAAAATTAA  299

seq1  GTT-AAAAAAAATCTTTGTATAGTTTAGGATTAACTACTGGGTGAGCAAT  341
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAAAAAATCTTTGTATAGTTTAGGATTAACTACTGGGTGAGCAAT  349

seq1  GGTCAGAAATTTGTCAGAAGGGGTGGGTGGATATGGGGGACTTTTGGTAT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGAAATTTGTCAGAAGGGGTGGGTGGATATGGGGGACTTTTGGTAT  399

seq1  AGCATTGGAAATGTAAATGAGTTAAATACCTAATAAAAAATGGAAAAAAA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGGAAATGTAAATGAGTTAAATACCTAATAAAAAATGGAAAAAAA  449

seq1  AAAAAAAAAGAAATTTGTCAGAAATGGAGTAATTTCTAATATTGCCATTG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGAAATTTGTCAGAAATGGAGTAATTTCTAATATTGCCATTG  499

seq1  TCTTTTTTTCCCCCATTTTCAGTTTTTTATTTTTGTTGTTGGTTAGTTGG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTCCCCCATTTTCAGTTTTTTATTTTTGTTGTTGGTTAGTTGG  549

seq1  ATTTTTGTTTTTGTTTTTGTCTTGAGACAGAGAGTCTCTTTGTAGCCTTG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTTTTTGTTTTTGTCTTGAGACAGAGAGTCTCTTTGTAGCCTTG  599

seq1  GTGGTTCTGGCATTCAATCTGTAGACTGGGCTGGCCTCGAACTTACAGGG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTCTGGCATTCAATCTGTAGACTGGGCTGGCCTCGAACTTACAGGG  649

seq1  ATCCACCTGCCTCTGCCTCTGCCTCTTGAGTGCTCGGATTAAAGGTGTTG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCTGCCTCTGCCTCTGCCTCTTGAGTGCTCGGATTAAAGGTGTTG  699

seq1  AACCACCACTGCTGGCTTTTCTTTTTTGTTGTTGTTTTTCATGTGTAAGA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCACTGCTGGCTTTTCTTTTTTGTTGTTGTTTTTCATGTGTAAGA  749

seq1  ACTACTTGCTTAGTGTCCTTGGAGGCTATTGAGAGAATGTCAGATCCTTT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTGCTTAGTGTCCTTGGAGGCTATTGAGAGAATGTCAGATCCTTT  799

seq1  GGAGCTAGAGTTAGAGAAAGTTGTGACATCTCTCCAGCTCCCAGTCTTTG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTAGAGTTAGAGAAAGTTGTGACATCTCTCCAGCTCCCAGTCTTTG  849

seq1  AGTTTTATTTTGAAATTTATTGTTTGATATCAGCTGTTATATGAAATTTG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTATTTTGAAATTTATTGTTTGATATCAGCTGTTATATGAAATTTG  899

seq1  GGGGGTGCTGGTGCAAGGTATGTGATGTCTGTGATGCGTGTACCGTACAG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTGCTGGTGCAAGGTATGTGATGTCTGTGATGCGTGTACCGTACAG  949

seq1  AATGTGTGGCCAGAAGAGGATGTTGGGTGTTCTTTGGATGTTCTTGCAAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTGGCCAGAAGAGGATGTTGGGTGTTCTTTGGATGTTCTTGCAAA  999

seq1  AGAATCTCTCAGTGAACCCAACTGGCTGCTTTGTGCTGGTGAGCTGGCCA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTCTCAGTGAACCCAACTGGCTGCTTTGTGCTGGTGAGCTGGCCA  1049

seq1  ACAAGCAGGCTCCTAAGAGCCTCCAGTTTGTACTGGGAATTC  1083
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAGGCTCCTAAGAGCCTCCAGTTTGTACTGGGAATTC  1091

seq1: chr1_162699205_162699955
seq2: B6Ng01-262B05.g_66_813

seq1  GAATTCCTGGCCCCCAATCTTCAAATGTGGCTATTTGAATGCCAAAATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGCCCCCAATCTTCAAATGTGGCTATTTGAATGCCAAAATTA  50

seq1  AAAGACAATTATCTTTGGTTACCAAAAACTGAAGGAATAAAGTGAGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAATTATCTTTGGTTACCAAAAACTGAAGGAATAAAGTGAGTGTG  100

seq1  ATGGTTAATATTAACCATCAACTTGATGAGATTTAGAGGATTATGAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTAATATTAACCATCAACTTGATGAGATTTAGAGGATTATGAAAAC  150

seq1  AAACCTCAGGTCTATCTGTGAGGGATTGCCCAAATTTTAGGTTCACTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCAGGTCTATCTGTGAGGGATTGCCCAAATTTTAGGTTCACTGAG  200

seq1  GTGGGAAGACATACCCTAAACACAAGGAGTACTAGTCCACAGGTTGGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAAGACATACCCTAAACACAAGGAGTACTAGTCCACAGGTTGGAAC  250

seq1  ACCAGAGTGAATAGAAAGGGAGAAAGAAAATGGACACTCTGCTTCCTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGTGAATAGAAAGGGAGAAAGAAAATGGACACTCTGCTTCCTAAC  300

seq1  TATAAGCACAATGTGACCGATCTGCCTCTGAATTCTGCCACCATGCCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGCACAATGTGACCGATCTGCCTCTGAATTCTGCCACCATGCCTTG  350

seq1  ATGTCATGGAACTGGCAGCCAAAATAGACCCTGCCTTCTTTAAGGTGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATGGAACTGGCAGCCAAAATAGACCCTGCCTTCTTTAAGGTGCTC  400

seq1  TGGTCAGGCATTTTGTCACAGCAATGAGGAAAATAACTAACACGGTGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGGCATTTTGTCACAGCAATGAGGAAAATAACTAACACGGTGTTA  450

seq1  GTCCGGCTATTTGACCTGCTAAATCCTGTGGAACATGCAGTACTGCAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGGCTATTTGACCTGCTAAATCCTGTGGAACATGCAGTACTGCAGTT  500

seq1  CTATGATGTTTCTCTAGCAACAGAGACTATGCAAGAACAGTTTTTAAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGATGTTTCTCTAGCAACAGAGACTATGCAAGAACAGTTTTTAAGAC  550

seq1  ACTGCTATTTTAAACATAAACAATTCAGCCTATTCTTCTGGTCTCTCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTATTTTAAACATAAACAATTCAGCCTATTCTTCTGGTCTCTCCAG  600

seq1  AAACTTGACCGGTATCTACTAAGTACACTAGAGGGTAGCTTTTAAAAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGACCGGTATCTACTAAGTACACTAGAGGGTAGCTTTTAAAAGTT  650

seq1  GTCAGCAAACACTTTGATATACTTCCCTTCAAAAATGAAATACAATGTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCAAACACTTTGATATACTTCCCTTCAAAAATGAAATACAATGTCC  700

seq1  CCATTTTCTTGAGTGAGGGCTGGGTTGGTTGGTTGGTTGGTTGGTTGGTT  750
      |||||||||||||||||||||||||||||||||||||   ||||||||||
seq2  CCATTTTCTTGAGTGAGGGCTGGGTTGGTTGGTTGGT---TTGGTTGGTT  747

seq1  G  751
      |
seq2  G  748