BAC Information

Click to search

BAC

Clone NameB6Ng01-262H06
Chromosome1 (Build37)
Map Location 153,477,836 - 153,622,740
singlet/doubletdoublet
Overlap geneNiban, Edem3
Upstream geneEG545370, LOC668040, LOC676758, EG668050, LOC668055, 3110040M04Rik, LOC100043286, Ivns1abp, 1200016B10Rik, 1190005F20Rik, Rnf2
Downstream gene1700025G04Rik, LOC668076, 5730449L18Rik, Glt25d2, Rgl1, EG639787, Apobec4, Arpc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262H06.bB6Ng01-262H06.g
ACCGA066865GA066866
length1,0951,088
definitionB6Ng01-262H06.b B6Ng01-262H06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(153,621,655 - 153,622,740)(153,477,836 - 153,478,941)
sequence
gaattcagactgggttcataatacaggttgaacaactctaagccccaaat
ctgaaacacaaaatgcttcaaaatctaaaaattttaggttttcagtatct
tgttggcaccactcaaaatgttagagatttcaactattttagctgctgga
ttaggcattctgtgcctgtaaagcctgtatcatgttccagacttctcgaa
ccaagtgactcagataaagattctttttcatacatacacatgagacagac
aggcatctataaagaacttttcttttcctacttctggttcttctacttca
aatactgtgtatatctgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
agcccatggccaacagttggagctacatgaagtgagctctactgggatct
gctctctgagtgagaacaaagtaaacagccatctgcgctcatcaagcact
gtctatgaaactaagctctcttgggcttgctcagtgggaaaggcacctgc
tgctaacccgatggcctgaactcaatccctgaggcccataggacagagga
gagaaccaactcctccaggttgccccacagtatggtacatgcacccacat
acatacacacagaataagcaaatatataaacatgtaaaataagaaacacc
ctacttcagaagaaagtactgtcaggctcagtgttcacctgacggagccg
aagcctatgccaccctcaccctacaaatgtcccactggcaaaagaggaca
tgtaacattacggtccagaacaggccctgattggagttctagttcgctca
cgtgaattacctgcgattcaagccaagctattccatattaacatgccctt
tcatctataagggaaaggaggacttactcttatagagctgttttataaat
tgagaccatgcacgcaaaaacactttgggccagagtgtctgaacttgcgt
gttggaacaagcaagtgtttcgatatcattactattaattataaatcagg
cagagtagaacttgtgactcttgggatgcgcctccatggaaggggacact
gtcactacaaggccgcttctcgttttctcatctaagttagggacg
gaattcatctcagtgccagcgaaatagccatgtttttttttttttttttt
gataattacctttcataatggaaattcaatgtcttaaaaacaatttttgt
ttgtttgttttgcatagaaaaagccacagatcaagggctaattaaataac
actggataaaagctataatataattttcaaagtttaggaaagagcacaat
gtttgaattgttttgtatctcgtgacacaaagcagtgttttaacgtctcc
tattgttttcttatgaactagtctcctaaaaggtgttgaaatcgaggaac
cttccccttttgaaagattttagactttagagccgtggttctcagccttc
ccagcgctgtgaccctttaatacagttaattctgctgtggtgacccccag
ccataaagtaattttcattgctacttcttaactgtaattttgctactttc
atgaacagaaatgtgaatatctgatatttctgatggtcttagatgacccc
tgtgaaagagccattcagcctcccaaaggggttgagacccacagatcggg
aacagctgtgctagagcatttatagtcgctgaagtaaccctgggaatcat
agggagtgaagcagtatgatagaggagaaaccaaataactgataaataga
tttgagtgaaccactgcagctgtggatagtgtcattcaaagaaccttcta
gaatgaaaaaaaaacctacaaattcagattctccagactttatatacatt
ccagccagactgtcacttttctcacctttataaactgatcaaatcaaaca
aaccaggatgtgatgttagtaatttcagacattttcatgggacaaactta
tttaaaagcttaagaggaattagcctgtagattctgatttctgtaaacaa
atacgcattggggctcatggtgcatacctgcataagaagtagtggaggcc
caaaccttcctcctgggggtggacgccatgggttcatatatatgcatgtg
gatgtctgggtctgatatttactcagctgtttcccatcactgcaatgtgc
tggagatgcaatacagttacctcggaggagagataagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_153621655_153622740
seq2: B6Ng01-262H06.b_42_1136 (reverse)

seq1  CGTCCCTAACTTAGATGGAGAAAACGAG-AGCGGCCTTTGTAGTGACAGT  49
      |||||||||||||||| ||||||||||| ||||||| |||||||||||||
seq2  CGTCCCTAACTTAGAT-GAGAAAACGAGAAGCGGCC-TTGTAGTGACAGT  48

seq1  GTCCCCTTTCCATGGA-GCGCATCCCAAGAGTCACAAG-TCTACTCTTGC  97
      |||||| ||||||||| ||||||||||||||||||||| ||||||| |||
seq2  GTCCCC-TTCCATGGAGGCGCATCCCAAGAGTCACAAGTTCTACTC-TGC  96

seq1  TTGA-TTATAATTAATAGTAATGATATC-AAACACTTGC-TGTT-CAACA  143
       ||| ||||||||||||||||||||||| |||||||||| |||| |||||
seq2  CTGATTTATAATTAATAGTAATGATATCGAAACACTTGCTTGTTCCAACA  146

seq1  CGC-AGGTCAGACACTCTGG-CCAAAGTG-TTTTGCGTGCATGGTCTCAT  190
      ||| || ||||||||||||| |||||||| ||||||||||||||||||| 
seq2  CGCAAGTTCAGACACTCTGGCCCAAAGTGTTTTTGCGTGCATGGTCTCAA  196

seq1  TTAATAAAACAGCTCTAT-AGAGTAGTTCCTCC-TTCCCTTATAGATG-A  237
      || ||||||||||||||| ||||||  |||||| |||||||||||||| |
seq2  TTTATAAAACAGCTCTATAAGAGTAAGTCCTCCTTTCCCTTATAGATGAA  246

seq1  AGGGCATGTTAATATGGAATAGCTTGGCTTGAATCGCAGGTAATTCACGT  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATGTTAATATGGAATAGCTTGGCTTGAATCGCAGGTAATTCACGT  296

seq1  GAGCGAACTAGAACTCCAATCAGGGCCTGTTCTGGACCGTAATGTTACAT  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGAACTAGAACTCCAATCAGGGCCTGTTCTGGACCGTAATGTTACAT  346

seq1  GTCCTCTTTTGCCAGTGGGACATTTGTAGGGTGAGGGTGGCATAGGCTTC  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTTTTGCCAGTGGGACATTTGTAGGGTGAGGGTGGCATAGGCTTC  396

seq1  GGCTCCGTCAGGTGAACACTGAGCCTGACAGTACTTTCTTCTGAAGTAGG  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCGTCAGGTGAACACTGAGCCTGACAGTACTTTCTTCTGAAGTAGG  446

seq1  GTGTTTCTTATTTTACATGTTTATATATTTGCTTATTCTGTGTGTATGTA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCTTATTTTACATGTTTATATATTTGCTTATTCTGTGTGTATGTA  496

seq1  TGTGGGTGCATGTACCATACTGTGGGGCAACCTGGAGGAGTTGGTTCTCT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTGCATGTACCATACTGTGGGGCAACCTGGAGGAGTTGGTTCTCT  546

seq1  CCTCTGTCCTATGGGCCTCAGGGATTGAGTTCAGGCCATCGGGTTAGCAG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTCCTATGGGCCTCAGGGATTGAGTTCAGGCCATCGGGTTAGCAG  596

seq1  CAGGTGCCTTTCCCACTGAGCAAGCCCAAGAGAGCTTAGTTTCATAGACA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGCCTTTCCCACTGAGCAAGCCCAAGAGAGCTTAGTTTCATAGACA  646

seq1  GTGCTTGATGAGCGCAGATGGCTGTTTACTTTGTTCTCACTCAGAGAGCA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGATGAGCGCAGATGGCTGTTTACTTTGTTCTCACTCAGAGAGCA  696

seq1  GATCCCAGTAGAGCTCACTTCATGTAGCTCCAACTGTTGGCCATGGGCTA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCAGTAGAGCTCACTTCATGTAGCTCCAACTGTTGGCCATGGGCTA  746

seq1  CACACACACACACACACACACACACACACACGCAGATATACACAGTATTT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACGCAGATATACACAGTATTT  796

seq1  GAAGTAGAAGAACCAGAAGTAGGAAAAGAAAAGTTCTTTATAGATGCCTG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGAAGAACCAGAAGTAGGAAAAGAAAAGTTCTTTATAGATGCCTG  846

seq1  TCTGTCTCATGTGTATGTATGAAAAAGAATCTTTATCTGAGTCACTTGGT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCATGTGTATGTATGAAAAAGAATCTTTATCTGAGTCACTTGGT  896

seq1  TCGAGAAGTCTGGAACATGATACAGGCTTTACAGGCACAGAATGCCTAAT  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGAAGTCTGGAACATGATACAGGCTTTACAGGCACAGAATGCCTAAT  946

seq1  CCAGCAGCTAAAATAGTTGAAATCTCTAACATTTTGAGTGGTGCCAACAA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGCTAAAATAGTTGAAATCTCTAACATTTTGAGTGGTGCCAACAA  996

seq1  GATACTGAAAACCTAAAATTTTTAGATTTTGAAGCATTTTGTGTTTCAGA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTGAAAACCTAAAATTTTTAGATTTTGAAGCATTTTGTGTTTCAGA  1046

seq1  TTTGGGGCTTAGAGTTGTTCAACCTGTATTATGAACCCAGTCTGAATTC  1086
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGCTTAGAGTTGTTCAACCTGTATTATGAACCCAGTCTGAATTC  1095

seq1: chr1_153477836_153478941
seq2: B6Ng01-262H06.g_64_1151

seq1  GAATTCATCTCAGTGCCAGCGAAATAGCCATGTTTTTTTTTTTTTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTCAGTGCCAGCGAAATAGCCATGTTTTTTTTTTTTTTTTTT  50

seq1  GATAATTACCTTTCATAATGGAAATTCAATGTCTTAAAAACAATTTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTACCTTTCATAATGGAAATTCAATGTCTTAAAAACAATTTTTGT  100

seq1  TTGTTTGTTTTGCATAGAAAAAGCCACAGATCAAGGGCTAATTAAATAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTTGCATAGAAAAAGCCACAGATCAAGGGCTAATTAAATAAC  150

seq1  ACTGGATAAAAGCTATAATATAATTTTCAAAGTTTAGGAAAGAGCACAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGATAAAAGCTATAATATAATTTTCAAAGTTTAGGAAAGAGCACAAT  200

seq1  GTTTGAATTGTTTTGTATCTCGTGACACAAAGCAGTGTTTTAACGTCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAATTGTTTTGTATCTCGTGACACAAAGCAGTGTTTTAACGTCTCC  250

seq1  TATTGTTTTCTTATGAACTAGTCTCCTAAAAGGTGTTGAAATCGAGGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTTTCTTATGAACTAGTCTCCTAAAAGGTGTTGAAATCGAGGAAC  300

seq1  CTTCCCCTTTTGAAAGATTTTAGACTTTAGAGCCGTGGTTCTCAGCCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCTTTTGAAAGATTTTAGACTTTAGAGCCGTGGTTCTCAGCCTTC  350

seq1  CCAGCGCTGTGACCCTTTAATACAGTTAATTCTGCTGTGGTGACCCCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCGCTGTGACCCTTTAATACAGTTAATTCTGCTGTGGTGACCCCCAG  400

seq1  CCATAAAGTAATTTTCATTGCTACTTCTTAACTGTAATTTTGCTACTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAGTAATTTTCATTGCTACTTCTTAACTGTAATTTTGCTACTTTC  450

seq1  ATGAACAGAAATGTGAATATCTGATATTTCTGATGGTCTTAGATGACCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAGAAATGTGAATATCTGATATTTCTGATGGTCTTAGATGACCCC  500

seq1  TGTGAAAGAGCCATTCAGCCTCCCAAAGGGGTTGAGACCCACAGATCGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAGAGCCATTCAGCCTCCCAAAGGGGTTGAGACCCACAGATCGGG  550

seq1  AACAGCTGTGCTAGAGCATTTATAGTCGCTGAAGTAACCCTGGGAATCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTGTGCTAGAGCATTTATAGTCGCTGAAGTAACCCTGGGAATCAT  600

seq1  AGGGAGTGAAGCAGTATGATAGAGGAGAAACCAAATAACTGATAAATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTGAAGCAGTATGATAGAGGAGAAACCAAATAACTGATAAATAGA  650

seq1  TTTGAGTGAACCACTGCAGCTGTGGATAGTGTCATTCAAAGAACCTTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTGAACCACTGCAGCTGTGGATAGTGTCATTCAAAGAACCTTCTA  700

seq1  GAATGAAAAAAAAACCTACAAATTCAGATTCTCCAGACTTTATATACATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAAAAAAAAACCTACAAATTCAGATTCTCCAGACTTTATATACATT  750

seq1  CCAGCCAGACTGTCACTTTTCTCACCTTTATAAACTGATCAAATCAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAGACTGTCACTTTTCTCACCTTTATAAACTGATCAAATCAAACA  800

seq1  AACCAGGATGTGATGTTAGTAATTTCAGACATTTTCATGGGACAAACTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGATGTGATGTTAGTAATTTCAGACATTTTCATGGGACAAACTTA  850

seq1  TTTAAAAGCTTAAGAGGAATTAGCCTGTAAGATTCTGATTTCTGTAAACA  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTAAAAGCTTAAGAGGAATTAGCCTGT-AGATTCTGATTTCTGTAAACA  899

seq1  AATACGCATTGGGCTTCATGGTGCATACCTGCATAAGAAGTAGTGAGGCC  950
      |||||||||||||  ||||||||||||||||||||||||||||||  | |
seq2  AATACGCATTGGGGCTCATGGTGCATACCTGCATAAGAAGTAGTGGAGGC  949

seq1  CCAAACCTTCCTTCCTGGGGT-GACGCCATGGGTTTCATTATTATTATGC  999
      |||||||||||| |  ||||| ||||||||||| |||| |||   |||||
seq2  CCAAACCTTCCTCCTGGGGGTGGACGCCATGGG-TTCA-TAT--ATATGC  995

seq1  ATTGTGATGTTCTTGGGTCTTGAATATTTACTCAGCTGTTTTCCCAATCA  1049
      ||   |||||   |||||||   ||||||||||||||||||  || ||||
seq2  ATGTGGATGT--CTGGGTCT--GATATTTACTCAGCTGTTT--CCCATCA  1039

seq1  CTTGCCAAATATTTGCTGAGTATGCAAATACAGTATACCCTCGGAGGAGA  1099
      | |||     || |||||   |||| |||||||| || ||||||||||||
seq2  C-TGC----AATGTGCTGGAGATGC-AATACAGT-TA-CCTCGGAGGAGA  1081

seq1  GATAAGC  1106
      |||||||
seq2  GATAAGC  1088